RNA–Protein interactions for RNA: ENST00000300146.9

PATL1-201, Transcript of PAT1 homolog 1, processing body mRNA decay factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PATL1, Length 4,072 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PATL1-201ENST00000300146 NISCHQ9Y2I1 1504 aa13.06□□□□□ -0.32
PATL1-201ENST00000300146 DCAF8L2P0C7V8 631 aa11.89□□□□□ -0.51
PATL1-201ENST00000300146 ABCC9O60706 1549 aa11.88□□□□□ -0.51
PATL1-201ENST00000300146 PABPN1Q86U42 306 aaKnown RBP eCLIP11.33□□□□□ -0.6
PATL1-201ENST00000300146 CCDC180Q9P1Z9 1646 aa11.31□□□□□ -0.6
PATL1-201ENST00000300146 DNAJC5BQ9UF47 199 aa11.09□□□□□ -0.63
PATL1-201ENST00000300146 SHROOM4Q9ULL8 1493 aa10.97□□□□□ -0.65
PATL1-201ENST00000300146 RB1CC1Q8TDY2 1594 aa10.97□□□□□ -0.65
PATL1-201ENST00000300146 NACADO15069 1562 aa10.85□□□□□ -0.67
PATL1-201ENST00000300146 SCRIBQ14160 1630 aa10.81□□□□□ -0.68
PATL1-201ENST00000300146 ZCCHC6Q5VYS8 1495 aaKnown RBP10.78□□□□□ -0.68
PATL1-201ENST00000300146 BICRAQ9NZM4 1560 aa10.59□□□□□ -0.71
PATL1-201ENST00000300146 CECR2Q9BXF3 1484 aa10.55□□□□□ -0.72
PATL1-201ENST00000300146 UNC13AQ9UPW8 1703 aa10.55□□□□□ -0.72
PATL1-201ENST00000300146 MYO15BQ96JP2 1530 aa10.52□□□□□ -0.73
PATL1-201ENST00000300146 DCAF1Q9Y4B6 1507 aa10.5□□□□□ -0.73
PATL1-201ENST00000300146 CC2D2AQ9P2K1 1620 aa10.44□□□□□ -0.74
PATL1-201ENST00000300146 EIF4G1Q04637 1599 aaKnown RBP10.42□□□□□ -0.74
PATL1-201ENST00000300146 SUPT5HO00267 1087 aaKnown RBP10.36□□□□□ -0.75
PATL1-201ENST00000300146 ERCC6Q03468 1493 aa10.24□□□□□ -0.77
PATL1-201ENST00000300146 ATAD2BQ9ULI0 1458 aa10.2□□□□□ -0.78
PATL1-201ENST00000300146 BAZ1BQ9UIG0 1483 aaKnown RBP10.19□□□□□ -0.78
PATL1-201ENST00000300146 NESP48681 1621 aa10.18□□□□□ -0.78
PATL1-201ENST00000300146 MROH2BQ7Z745 1585 aa10.18□□□□□ -0.78
PATL1-201ENST00000300146 NCAPD3P42695 1498 aa10.11□□□□□ -0.79
PATL1-201ENST00000300146 SMARCA4P51532 1647 aa10.1□□□□□ -0.79
PATL1-201ENST00000300146 BAZ1AQ9NRL2 1556 aaPredicted RBP10.1□□□□□ -0.79
PATL1-201ENST00000300146 SMARCA2P51531 1590 aa10.07□□□□□ -0.8
PATL1-201ENST00000300146 RSF1Q96T23 1441 aaPredicted RBP10.05□□□□□ -0.8
PATL1-201ENST00000300146 WIZO95785 1651 aa10.04□□□□□ -0.8
PATL1-201ENST00000300146 FBLN2P98095 1184 aa10.02□□□□□ -0.81
PATL1-201ENST00000300146 TRIM41Q8WV44 630 aa10.02□□□□□ -0.81
PATL1-201ENST00000300146 CADPSQ9ULU8 1353 aa9.99□□□□□ -0.81
PATL1-201ENST00000300146 PDS5BQ9NTI5 1447 aa9.96□□□□□ -0.81
PATL1-201ENST00000300146 DNAJC5Q9H3Z4 198 aa9.96□□□□□ -0.82
PATL1-201ENST00000300146 HMGXB3Q12766 1538 aa9.91□□□□□ -0.82
PATL1-201ENST00000300146 FANCD2Q9BXW9 1451 aa9.87□□□□□ -0.83
PATL1-201ENST00000300146 CCDC88BA6NC98 1476 aa9.87□□□□□ -0.83
PATL1-201ENST00000300146 CEP164Q9UPV0 1460 aa9.84□□□□□ -0.83
PATL1-201ENST00000300146 TTBK1Q5TCY1 1321 aaPredicted RBP9.84□□□□□ -0.83
PATL1-201ENST00000300146 EHMT2Q96KQ7 1210 aa9.83□□□□□ -0.84
PATL1-201ENST00000300146 OSCARQ8IYS5 282 aa9.79□□□□□ -0.84
PATL1-201ENST00000300146 CUX2O14529 1486 aa9.79□□□□□ -0.84
PATL1-201ENST00000300146 TOP2AP11388 1531 aaKnown RBP9.79□□□□□ -0.84
PATL1-201ENST00000300146 PEG3Q9GZU2 1588 aa9.78□□□□□ -0.84
PATL1-201ENST00000300146 LAMC3Q9Y6N6 1575 aa9.78□□□□□ -0.84
PATL1-201ENST00000300146 TDRD9Q8NDG6 1382 aaKnown RBP9.78□□□□□ -0.84
PATL1-201ENST00000300146 MRC2Q9UBG0 1479 aa9.78□□□□□ -0.84
PATL1-201ENST00000300146 KIF21AQ7Z4S6 1674 aa9.77□□□□□ -0.85
PATL1-201ENST00000300146 CYB5RLQ6IPT4 315 aa9.77□□□□□ -0.85
PATL1-201ENST00000300146 CFTRP13569 1480 aa9.76□□□□□ -0.85
PATL1-201ENST00000300146 CHMP7Q8WUX9 453 aaPredicted RBP9.75□□□□□ -0.85
PATL1-201ENST00000300146 AQRO60306 1485 aaKnown RBP eCLIP9.73□□□□□ -0.851e-6■■■■□ 20
PATL1-201ENST00000300146 TRHP20396 242 aaPredicted RBP9.72□□□□□ -0.85
PATL1-201ENST00000300146 URB2Q14146 1524 aaKnown RBP9.71□□□□□ -0.85
PATL1-201ENST00000300146 RANGAP1P46060 587 aaPredicted RBP9.71□□□□□ -0.86
PATL1-201ENST00000300146 RAD54L2Q9Y4B4 1467 aa9.7□□□□□ -0.86
PATL1-201ENST00000300146 ZNF608Q9ULD9 1512 aaPredicted RBP9.7□□□□□ -0.86
PATL1-201ENST00000300146 FAM9AQ8IZU1 332 aaPredicted RBP9.7□□□□□ -0.86
PATL1-201ENST00000300146 SOGA1O94964 1423 aa9.67□□□□□ -0.86
PATL1-201ENST00000300146 THOC2Q8NI27 1593 aaKnown RBP9.67□□□□□ -0.86
PATL1-201ENST00000300146 TOPBP1Q92547 1522 aa9.63□□□□□ -0.87
PATL1-201ENST00000300146 WDR62O43379 1518 aa9.6□□□□□ -0.87
PATL1-201ENST00000300146 FGD5Q6ZNL6 1462 aa9.58□□□□□ -0.88
PATL1-201ENST00000300146 ABCC8Q09428 1581 aa9.58□□□□□ -0.88
PATL1-201ENST00000300146 POLA1P09884 1462 aaPredicted RBP9.58□□□□□ -0.88
PATL1-201ENST00000300146 IFT140Q96RY7 1462 aa9.56□□□□□ -0.88
PATL1-201ENST00000300146 WRNQ14191 1432 aaPredicted RBP eCLIP9.55□□□□□ -0.88
PATL1-201ENST00000300146 ARID3CA6NKF2 412 aa9.54□□□□□ -0.88
PATL1-201ENST00000300146 CUX1P39880 1505 aa9.51□□□□□ -0.89
PATL1-201ENST00000300146 SNAPC4Q5SXM2 1469 aa9.5□□□□□ -0.89
PATL1-201ENST00000300146 DNMBPQ6XZF7 1577 aa9.5□□□□□ -0.89
PATL1-201ENST00000300146 P3H3Q8IVL6 736 aa9.49□□□□□ -0.89
PATL1-201ENST00000300146 GAPVD1Q14C86 1478 aa9.48□□□□□ -0.89
PATL1-201ENST00000300146 ATP1B4Q9UN42 357 aaPredicted RBP9.46□□□□□ -0.9
PATL1-201ENST00000300146 JPH4Q96JJ6 628 aa9.44□□□□□ -0.9
PATL1-201ENST00000300146 EIF4G3O43432 1585 aaKnown RBP9.44□□□□□ -0.9
PATL1-201ENST00000300146 PRDM2Q13029 1718 aa9.43□□□□□ -0.9
PATL1-201ENST00000300146 GRIN2BQ13224 1484 aa9.43□□□□□ -0.9
PATL1-201ENST00000300146 NPM1P06748 294 aaKnown RBP eCLIP9.43□□□□□ -0.9
PATL1-201ENST00000300146 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.42□□□□□ -0.9
PATL1-201ENST00000300146 HNRNPUL2Q1KMD3 747 aaKnown RBP9.42□□□□□ -0.9
PATL1-201ENST00000300146 UBTFP17480 764 aaKnown RBP9.39□□□□□ -0.91
PATL1-201ENST00000300146 SYNJ1O43426 1573 aa9.39□□□□□ -0.91
PATL1-201ENST00000300146 ARHGEF11O15085 1522 aa9.39□□□□□ -0.91
PATL1-201ENST00000300146 TARBP1Q13395 1621 aaKnown RBP9.36□□□□□ -0.91
PATL1-201ENST00000300146 KCNH8Q96L42 1107 aa9.36□□□□□ -0.91
PATL1-201ENST00000300146 CARMIL1Q5VZK9 1371 aa9.35□□□□□ -0.91
PATL1-201ENST00000300146 KIF27Q86VH2 1401 aa9.35□□□□□ -0.91
PATL1-201ENST00000300146 SYNJ2O15056 1496 aa9.34□□□□□ -0.91
PATL1-201ENST00000300146 RUSC2Q8N2Y8 1516 aa9.34□□□□□ -0.91
PATL1-201ENST00000300146 IGF1RP08069 1367 aa9.34□□□□□ -0.91
PATL1-201ENST00000300146 FAM69CQ0P6D2 419 aa9.34□□□□□ -0.91
PATL1-201ENST00000300146 ABCA10Q8WWZ4 1543 aa9.33□□□□□ -0.92
PATL1-201ENST00000300146 PRG4Q92954 1404 aaPredicted RBP9.33□□□□□ -0.92
PATL1-201ENST00000300146 RIMBP3CA6NJZ7 1639 aa9.32□□□□□ -0.92
PATL1-201ENST00000300146 RIMBP3BA6NNM3 1639 aa9.32□□□□□ -0.92
PATL1-201ENST00000300146 RIMBP3Q9UFD9 1639 aa9.32□□□□□ -0.92
PATL1-201ENST00000300146 CHD1O14646 1710 aa9.32□□□□□ -0.92
PATL1-201ENST00000300146 ARAP1Q96P48 1450 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms