Protein–RNA interactions for Protein: O75487

GPC4, Glypican-4, humanhuman

Predictions only

Length 556 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GPC4O75487 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
GPC4O75487 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
GPC4O75487 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
GPC4O75487 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
GPC4O75487 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
GPC4O75487 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 TNXA-203ENST00000507684 2038 ntBASIC19.32■□□□□ 0.68
GPC4O75487 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.32■□□□□ 0.68
GPC4O75487 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.32■□□□□ 0.68
GPC4O75487 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.32■□□□□ 0.68
GPC4O75487 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
GPC4O75487 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.32■□□□□ 0.68
GPC4O75487 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.32■□□□□ 0.68
GPC4O75487 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.32■□□□□ 0.68
GPC4O75487 AC069544.1-201ENST00000609399 999 ntBASIC19.32■□□□□ 0.68
GPC4O75487 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.32■□□□□ 0.68
GPC4O75487 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.32■□□□□ 0.68
GPC4O75487 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
GPC4O75487 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.31■□□□□ 0.68
GPC4O75487 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
GPC4O75487 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.31■□□□□ 0.68
GPC4O75487 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
GPC4O75487 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.31■□□□□ 0.68
GPC4O75487 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
GPC4O75487 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
GPC4O75487 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
GPC4O75487 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.31■□□□□ 0.68
GPC4O75487 AC233263.1-201ENST00000578059 224 ntBASIC19.31■□□□□ 0.68
GPC4O75487 MTDHP1-201ENST00000605323 784 ntBASIC19.31■□□□□ 0.68
GPC4O75487 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
GPC4O75487 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
GPC4O75487 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 AC004408.2-201ENST00000623613 2777 ntBASIC19.31■□□□□ 0.68
GPC4O75487 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.31■□□□□ 0.68
GPC4O75487 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
GPC4O75487 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
GPC4O75487 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
GPC4O75487 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
GPC4O75487 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
GPC4O75487 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
GPC4O75487 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
GPC4O75487 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
GPC4O75487 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
GPC4O75487 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
GPC4O75487 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
GPC4O75487 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.3■□□□□ 0.68
GPC4O75487 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.3■□□□□ 0.68
GPC4O75487 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.3■□□□□ 0.68
GPC4O75487 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
GPC4O75487 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.3■□□□□ 0.68
GPC4O75487 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.3■□□□□ 0.68
GPC4O75487 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.3■□□□□ 0.68
GPC4O75487 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
GPC4O75487 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
GPC4O75487 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
GPC4O75487 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
GPC4O75487 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
GPC4O75487 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
GPC4O75487 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
GPC4O75487 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
GPC4O75487 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
GPC4O75487 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
GPC4O75487 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
GPC4O75487 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
GPC4O75487 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.29■□□□□ 0.68
GPC4O75487 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
GPC4O75487 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
GPC4O75487 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
GPC4O75487 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms