RNA–Protein interactions for RNA: ENST00000440088.5

APTR-204, Transcript of Alu-mediated CDKN1A/p21 transcriptional regulator, humanhuman

TSL 1 (best) BASIC

Gene APTR, Length 2,029 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APTR-204ENST00000440088 NISCHQ9Y2I1 1504 aa44.69■■■■■ 4.75
APTR-204ENST00000440088 CCDC180Q9P1Z9 1646 aa39.01■■■■□ 3.84
APTR-204ENST00000440088 ZCCHC6Q5VYS8 1495 aaKnown RBP37.53■■■■□ 3.6
APTR-204ENST00000440088 DCAF1Q9Y4B6 1507 aa36.97■■■■□ 3.51
APTR-204ENST00000440088 DCAF8L2P0C7V8 631 aa36.95■■■■□ 3.51
APTR-204ENST00000440088 ABCC9O60706 1549 aa36.94■■■■□ 3.5
APTR-204ENST00000440088 MYO15BQ96JP2 1530 aa36.57■■■■□ 3.44
APTR-204ENST00000440088 SHROOM4Q9ULL8 1493 aa36.39■■■■□ 3.42
APTR-204ENST00000440088 NACADO15069 1562 aa36.36■■■■□ 3.41
APTR-204ENST00000440088 RB1CC1Q8TDY2 1594 aa36.07■■■■□ 3.36
APTR-204ENST00000440088 SCRIBQ14160 1630 aa35.85■■■■□ 3.33
APTR-204ENST00000440088 UNC13AQ9UPW8 1703 aa35.31■■■■□ 3.24
APTR-204ENST00000440088 SUPT5HO00267 1087 aaKnown RBP35.01■■■■□ 3.19
APTR-204ENST00000440088 BICRAQ9NZM4 1560 aa34.95■■■■□ 3.18
APTR-204ENST00000440088 PABPN1Q86U42 306 aaKnown RBP eCLIP34.82■■■■□ 3.16
APTR-204ENST00000440088 CECR2Q9BXF3 1484 aa34.71■■■■□ 3.15
APTR-204ENST00000440088 RSF1Q96T23 1441 aaPredicted RBP34.64■■■■□ 3.14
APTR-204ENST00000440088 BAZ1AQ9NRL2 1556 aaPredicted RBP34.54■■■■□ 3.12
APTR-204ENST00000440088 MROH2BQ7Z745 1585 aa34.51■■■■□ 3.12
APTR-204ENST00000440088 SMARCA4P51532 1647 aa34.37■■■■□ 3.09
APTR-204ENST00000440088 WIZO95785 1651 aa34.23■■■■□ 3.07
APTR-204ENST00000440088 PEG3Q9GZU2 1588 aa33.97■■■■□ 3.03
APTR-204ENST00000440088 EIF4G1Q04637 1599 aaKnown RBP33.92■■■■□ 3.02
APTR-204ENST00000440088 TOP2AP11388 1531 aaKnown RBP33.89■■■■□ 3.01
APTR-204ENST00000440088 SMARCA2P51531 1590 aa33.83■■■■□ 3.01
APTR-204ENST00000440088 ATAD2BQ9ULI0 1458 aa33.83■■■■□ 3.01
APTR-204ENST00000440088 BAZ1BQ9UIG0 1483 aaKnown RBP33.65■■■□□ 2.98
APTR-204ENST00000440088 NCAPD3P42695 1498 aa33.55■■■□□ 2.96
APTR-204ENST00000440088 CCDC88BA6NC98 1476 aa33.53■■■□□ 2.96
APTR-204ENST00000440088 HMGXB3Q12766 1538 aa33.51■■■□□ 2.96
APTR-204ENST00000440088 CHIC1Q5VXU3 224 aa33.46■■■□□ 2.95
APTR-204ENST00000440088 CC2D2AQ9P2K1 1620 aa33.43■■■□□ 2.94
APTR-204ENST00000440088 TRIM41Q8WV44 630 aa32.94■■■□□ 2.86
APTR-204ENST00000440088 ABCC8Q09428 1581 aa32.8■■■□□ 2.84
APTR-204ENST00000440088 CFTRP13569 1480 aa32.79■■■□□ 2.84
APTR-204ENST00000440088 CADPSQ9ULU8 1353 aa32.7■■■□□ 2.82
APTR-204ENST00000440088 WRNQ14191 1432 aaPredicted RBP eCLIP32.63■■■□□ 2.81
APTR-204ENST00000440088 PRDM2Q13029 1718 aa32.62■■■□□ 2.81
APTR-204ENST00000440088 DNAJC5BQ9UF47 199 aa32.6■■■□□ 2.81
APTR-204ENST00000440088 SYNJ1O43426 1573 aa32.47■■■□□ 2.79
APTR-204ENST00000440088 LAMC3Q9Y6N6 1575 aa32.44■■■□□ 2.78
APTR-204ENST00000440088 NESP48681 1621 aa32.4■■■□□ 2.78
APTR-204ENST00000440088 TOP2BQ02880 1626 aa32.37■■■□□ 2.77
APTR-204ENST00000440088 FANCD2Q9BXW9 1451 aa32.33■■■□□ 2.77
APTR-204ENST00000440088 BIVM-ERCC5R4GMW8 1640 aa32.32■■■□□ 2.77
APTR-204ENST00000440088 FAM9AQ8IZU1 332 aaPredicted RBP32.31■■■□□ 2.76
APTR-204ENST00000440088 CUX1P39880 1505 aa32.27■■■□□ 2.76
APTR-204ENST00000440088 PDS5BQ9NTI5 1447 aa32.2■■■□□ 2.74
APTR-204ENST00000440088 SOGA1O94964 1423 aa32.17■■■□□ 2.74
APTR-204ENST00000440088 LOC105371045A0A1W2PR82 267 aa32.17■■■□□ 2.74
APTR-204ENST00000440088 EEA1Q15075 1411 aa32.14■■■□□ 2.74
APTR-204ENST00000440088 CEP164Q9UPV0 1460 aa32.14■■■□□ 2.74
APTR-204ENST00000440088 RUSC2Q8N2Y8 1516 aa32.04■■■□□ 2.72
APTR-204ENST00000440088 DNMBPQ6XZF7 1577 aa32.03■■■□□ 2.72
APTR-204ENST00000440088 KIF21AQ7Z4S6 1674 aa32.02■■■□□ 2.72
APTR-204ENST00000440088 TOPBP1Q92547 1522 aa31.96■■■□□ 2.71
APTR-204ENST00000440088 CSRNP3Q8WYN3 585 aa31.95■■■□□ 2.71
APTR-204ENST00000440088 FGD5Q6ZNL6 1462 aa31.95■■■□□ 2.7
APTR-204ENST00000440088 URB2Q14146 1524 aaKnown RBP31.91■■■□□ 2.7
APTR-204ENST00000440088 EHMT2Q96KQ7 1210 aa31.84■■■□□ 2.69
APTR-204ENST00000440088 KIF27Q86VH2 1401 aa31.82■■■□□ 2.68
APTR-204ENST00000440088 POLA1P09884 1462 aaPredicted RBP31.81■■■□□ 2.68
APTR-204ENST00000440088 MRC2Q9UBG0 1479 aa31.76■■■□□ 2.68
APTR-204ENST00000440088 CUX2O14529 1486 aa31.74■■■□□ 2.67
APTR-204ENST00000440088 ERCC6Q03468 1493 aa31.71■■■□□ 2.67
APTR-204ENST00000440088 KIF21BO75037 1637 aa31.71■■■□□ 2.67
APTR-204ENST00000440088 RAD54L2Q9Y4B4 1467 aa31.69■■■□□ 2.66
APTR-204ENST00000440088 GOLGA3Q08378 1498 aa31.68■■■□□ 2.66
APTR-204ENST00000440088 ABCA10Q8WWZ4 1543 aa31.67■■■□□ 2.66
APTR-204ENST00000440088 WDR62O43379 1518 aa31.6■■■□□ 2.65
APTR-204ENST00000440088 PRXQ9BXM0 1461 aa31.57■■■□□ 2.64
APTR-204ENST00000440088 TNIKQ9UKE5 1360 aa31.56■■■□□ 2.64
APTR-204ENST00000440088 WDR97A6NE52 1622 aa31.56■■■□□ 2.64
APTR-204ENST00000440088 UBTFP17480 764 aaKnown RBP31.56■■■□□ 2.64
APTR-204ENST00000440088 RAPGEF2Q9Y4G8 1499 aa31.53■■■□□ 2.64
APTR-204ENST00000440088 IGF1RP08069 1367 aa31.52■■■□□ 2.64
APTR-204ENST00000440088 ERICH3Q5RHP9 1530 aa31.52■■■□□ 2.64
APTR-204ENST00000440088 THOC2Q8NI27 1593 aaKnown RBP31.5■■■□□ 2.63
APTR-204ENST00000440088 TARBP1Q13395 1621 aaKnown RBP31.49■■■□□ 2.63
APTR-204ENST00000440088 ABCA5Q8WWZ7 1642 aa31.41■■■□□ 2.62
APTR-204ENST00000440088 TDRD9Q8NDG6 1382 aaKnown RBP31.4■■■□□ 2.62
APTR-204ENST00000440088 CEP162Q5TB80 1403 aa31.39■■■□□ 2.62
APTR-204ENST00000440088 IFT140Q96RY7 1462 aa31.38■■■□□ 2.61
APTR-204ENST00000440088 CARMIL1Q5VZK9 1371 aa31.38■■■□□ 2.61
APTR-204ENST00000440088 GAPVD1Q14C86 1478 aa31.37■■■□□ 2.61
APTR-204ENST00000440088 CUL7Q14999 1698 aa31.31■■■□□ 2.6
APTR-204ENST00000440088 AQRO60306 1485 aaKnown RBP eCLIP31.21■■■□□ 2.59
APTR-204ENST00000440088 PBRM1Q86U86 1689 aa31.18■■■□□ 2.58
APTR-204ENST00000440088 ZNF608Q9ULD9 1512 aaPredicted RBP31.18■■■□□ 2.58
APTR-204ENST00000440088 CLIP1P30622 1438 aa31.17■■■□□ 2.58
APTR-204ENST00000440088 GRIN2BQ13224 1484 aa31.13■■■□□ 2.57
APTR-204ENST00000440088 EIF4G3O43432 1585 aaKnown RBP31.09■■■□□ 2.57
APTR-204ENST00000440088 RANGAP1P46060 587 aaPredicted RBP31.03■■■□□ 2.56
APTR-204ENST00000440088 FHAD1B1AJZ9 1412 aa31.03■■■□□ 2.56
APTR-204ENST00000440088 ADAMTS12P58397 1594 aa31.01■■■□□ 2.55
APTR-204ENST00000440088 CTTNBP2Q8WZ74 1663 aa30.94■■■□□ 2.54
APTR-204ENST00000440088 SNAPC4Q5SXM2 1469 aa30.92■■■□□ 2.54
APTR-204ENST00000440088 VPS8Q8N3P4 1428 aa30.89■■■□□ 2.54
APTR-204ENST00000440088 MAGI1Q96QZ7 1491 aaPredicted RBP30.88■■■□□ 2.53
APTR-204ENST00000440088 ARHGAP35Q9NRY4 1499 aa30.86■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms