RNA–Protein interactions for RNA: ENST00000162749.6

TNFRSF1A-201, Transcript of TNF receptor superfamily member 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1A, Length 2,223 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-201ENST00000162749 NISCHQ9Y2I1 1504 aa44.65■■■■■ 4.74
TNFRSF1A-201ENST00000162749 CCDC180Q9P1Z9 1646 aa38.96■■■■□ 3.83
TNFRSF1A-201ENST00000162749 ZCCHC6Q5VYS8 1495 aaKnown RBP37.53■■■■□ 3.6
TNFRSF1A-201ENST00000162749 DCAF1Q9Y4B6 1507 aa36.9■■■■□ 3.5
TNFRSF1A-201ENST00000162749 DCAF8L2P0C7V8 631 aa36.83■■■■□ 3.49
TNFRSF1A-201ENST00000162749 ABCC9O60706 1549 aa36.8■■■■□ 3.48
TNFRSF1A-201ENST00000162749 MYO15BQ96JP2 1530 aa36.45■■■■□ 3.43
TNFRSF1A-201ENST00000162749 SHROOM4Q9ULL8 1493 aa36.44■■■■□ 3.42
TNFRSF1A-201ENST00000162749 NACADO15069 1562 aa36.23■■■■□ 3.39
TNFRSF1A-201ENST00000162749 RB1CC1Q8TDY2 1594 aa35.93■■■■□ 3.34
TNFRSF1A-201ENST00000162749 SCRIBQ14160 1630 aa35.84■■■■□ 3.33
TNFRSF1A-201ENST00000162749 UNC13AQ9UPW8 1703 aa35.36■■■■□ 3.25
TNFRSF1A-201ENST00000162749 SUPT5HO00267 1087 aaKnown RBP35.05■■■■□ 3.2
TNFRSF1A-201ENST00000162749 BICRAQ9NZM4 1560 aa34.9■■■■□ 3.18
TNFRSF1A-201ENST00000162749 CECR2Q9BXF3 1484 aa34.71■■■■□ 3.15
TNFRSF1A-201ENST00000162749 PABPN1Q86U42 306 aaKnown RBP eCLIP34.69■■■■□ 3.14
TNFRSF1A-201ENST00000162749 RSF1Q96T23 1441 aaPredicted RBP34.64■■■■□ 3.14
TNFRSF1A-201ENST00000162749 MROH2BQ7Z745 1585 aa34.52■■■■□ 3.12
TNFRSF1A-201ENST00000162749 BAZ1AQ9NRL2 1556 aaPredicted RBP34.48■■■■□ 3.11
TNFRSF1A-201ENST00000162749 SMARCA4P51532 1647 aa34.35■■■■□ 3.09
TNFRSF1A-201ENST00000162749 WIZO95785 1651 aa34.28■■■■□ 3.08
TNFRSF1A-201ENST00000162749 PEG3Q9GZU2 1588 aa33.92■■■■□ 3.02
TNFRSF1A-201ENST00000162749 TOP2AP11388 1531 aaKnown RBP33.86■■■■□ 3.01
TNFRSF1A-201ENST00000162749 EIF4G1Q04637 1599 aaKnown RBP33.83■■■■□ 3.01
TNFRSF1A-201ENST00000162749 ATAD2BQ9ULI0 1458 aa33.74■■■□□ 2.99
TNFRSF1A-201ENST00000162749 SMARCA2P51531 1590 aa33.72■■■□□ 2.99
TNFRSF1A-201ENST00000162749 BAZ1BQ9UIG0 1483 aaKnown RBP33.55■■■□□ 2.96
TNFRSF1A-201ENST00000162749 CHIC1Q5VXU3 224 aa33.55■■■□□ 2.96
TNFRSF1A-201ENST00000162749 CCDC88BA6NC98 1476 aa33.51■■■□□ 2.96
TNFRSF1A-201ENST00000162749 NCAPD3P42695 1498 aa33.44■■■□□ 2.94
TNFRSF1A-201ENST00000162749 HMGXB3Q12766 1538 aa33.42■■■□□ 2.94
TNFRSF1A-201ENST00000162749 CC2D2AQ9P2K1 1620 aa33.33■■■□□ 2.93
TNFRSF1A-201ENST00000162749 TRIM41Q8WV44 630 aa32.93■■■□□ 2.86
TNFRSF1A-201ENST00000162749 ABCC8Q09428 1581 aa32.87■■■□□ 2.85
TNFRSF1A-201ENST00000162749 CFTRP13569 1480 aa32.72■■■□□ 2.83
TNFRSF1A-201ENST00000162749 PRDM2Q13029 1718 aa32.66■■■□□ 2.82
TNFRSF1A-201ENST00000162749 WRNQ14191 1432 aaPredicted RBP eCLIP32.6■■■□□ 2.81
TNFRSF1A-201ENST00000162749 CADPSQ9ULU8 1353 aa32.57■■■□□ 2.8
TNFRSF1A-201ENST00000162749 SYNJ1O43426 1573 aa32.52■■■□□ 2.8
TNFRSF1A-201ENST00000162749 DNAJC5BQ9UF47 199 aa32.49■■■□□ 2.79
TNFRSF1A-201ENST00000162749 TOP2BQ02880 1626 aa32.37■■■□□ 2.77
TNFRSF1A-201ENST00000162749 FAM9AQ8IZU1 332 aaPredicted RBP32.35■■■□□ 2.77
TNFRSF1A-201ENST00000162749 BIVM-ERCC5R4GMW8 1640 aa32.35■■■□□ 2.77
TNFRSF1A-201ENST00000162749 NESP48681 1621 aa32.34■■■□□ 2.77
TNFRSF1A-201ENST00000162749 LAMC3Q9Y6N6 1575 aa32.33■■■□□ 2.77
TNFRSF1A-201ENST00000162749 LOC105371045A0A1W2PR82 267 aa32.28■■■□□ 2.76
TNFRSF1A-201ENST00000162749 CUX1P39880 1505 aa32.27■■■□□ 2.76
TNFRSF1A-201ENST00000162749 FANCD2Q9BXW9 1451 aa32.24■■■□□ 2.75
TNFRSF1A-201ENST00000162749 SOGA1O94964 1423 aa32.22■■■□□ 2.75
TNFRSF1A-201ENST00000162749 RUSC2Q8N2Y8 1516 aa32.11■■■□□ 2.73
TNFRSF1A-201ENST00000162749 EEA1Q15075 1411 aa32.1■■■□□ 2.73
TNFRSF1A-201ENST00000162749 PDS5BQ9NTI5 1447 aa32.03■■■□□ 2.72
TNFRSF1A-201ENST00000162749 CEP164Q9UPV0 1460 aa32.03■■■□□ 2.72
TNFRSF1A-201ENST00000162749 KIF21AQ7Z4S6 1674 aa32.01■■■□□ 2.71
TNFRSF1A-201ENST00000162749 DNMBPQ6XZF7 1577 aa31.96■■■□□ 2.71
TNFRSF1A-201ENST00000162749 CSRNP3Q8WYN3 585 aa31.92■■■□□ 2.7
TNFRSF1A-201ENST00000162749 EHMT2Q96KQ7 1210 aa31.91■■■□□ 2.7
TNFRSF1A-201ENST00000162749 FGD5Q6ZNL6 1462 aa31.9■■■□□ 2.7
TNFRSF1A-201ENST00000162749 TOPBP1Q92547 1522 aa31.9■■■□□ 2.7
TNFRSF1A-201ENST00000162749 URB2Q14146 1524 aaKnown RBP31.85■■■□□ 2.69
TNFRSF1A-201ENST00000162749 POLA1P09884 1462 aaPredicted RBP31.76■■■□□ 2.67
TNFRSF1A-201ENST00000162749 KIF27Q86VH2 1401 aa31.75■■■□□ 2.67
TNFRSF1A-201ENST00000162749 KIF21BO75037 1637 aa31.75■■■□□ 2.67
TNFRSF1A-201ENST00000162749 GOLGA3Q08378 1498 aa31.69■■■□□ 2.66
TNFRSF1A-201ENST00000162749 CUX2O14529 1486 aa31.68■■■□□ 2.66
TNFRSF1A-201ENST00000162749 RAD54L2Q9Y4B4 1467 aa31.65■■■□□ 2.66
TNFRSF1A-201ENST00000162749 MRC2Q9UBG0 1479 aa31.63■■■□□ 2.65
TNFRSF1A-201ENST00000162749 ABCA10Q8WWZ4 1543 aa31.62■■■□□ 2.65
TNFRSF1A-201ENST00000162749 WDR97A6NE52 1622 aa31.58■■■□□ 2.65
TNFRSF1A-201ENST00000162749 TNIKQ9UKE5 1360 aa31.57■■■□□ 2.64
TNFRSF1A-201ENST00000162749 RAPGEF2Q9Y4G8 1499 aa31.57■■■□□ 2.64
TNFRSF1A-201ENST00000162749 PRXQ9BXM0 1461 aa31.57■■■□□ 2.64
TNFRSF1A-201ENST00000162749 ERICH3Q5RHP9 1530 aa31.52■■■□□ 2.64
TNFRSF1A-201ENST00000162749 ERCC6Q03468 1493 aa31.52■■■□□ 2.64
TNFRSF1A-201ENST00000162749 UBTFP17480 764 aaKnown RBP31.52■■■□□ 2.64
TNFRSF1A-201ENST00000162749 WDR62O43379 1518 aa31.5■■■□□ 2.63
TNFRSF1A-201ENST00000162749 IGF1RP08069 1367 aa31.47■■■□□ 2.63
TNFRSF1A-201ENST00000162749 TARBP1Q13395 1621 aaKnown RBP31.46■■■□□ 2.63
TNFRSF1A-201ENST00000162749 CEP162Q5TB80 1403 aa31.44■■■□□ 2.62
TNFRSF1A-201ENST00000162749 THOC2Q8NI27 1593 aaKnown RBP31.44■■■□□ 2.62
TNFRSF1A-201ENST00000162749 ABCA5Q8WWZ7 1642 aa31.4■■■□□ 2.62
TNFRSF1A-201ENST00000162749 TDRD9Q8NDG6 1382 aaKnown RBP31.32■■■□□ 2.6
TNFRSF1A-201ENST00000162749 CARMIL1Q5VZK9 1371 aa31.31■■■□□ 2.6
TNFRSF1A-201ENST00000162749 GAPVD1Q14C86 1478 aa31.29■■■□□ 2.6
TNFRSF1A-201ENST00000162749 CUL7Q14999 1698 aa31.28■■■□□ 2.6
TNFRSF1A-201ENST00000162749 IFT140Q96RY7 1462 aa31.24■■■□□ 2.59
TNFRSF1A-201ENST00000162749 PBRM1Q86U86 1689 aa31.19■■■□□ 2.58
TNFRSF1A-201ENST00000162749 CLIP1P30622 1438 aa31.18■■■□□ 2.58
TNFRSF1A-201ENST00000162749 AQRO60306 1485 aaKnown RBP eCLIP31.14■■■□□ 2.582e-6■■■■■ 30
TNFRSF1A-201ENST00000162749 ZNF608Q9ULD9 1512 aaPredicted RBP31.12■■■□□ 2.57
TNFRSF1A-201ENST00000162749 EIF4G3O43432 1585 aaKnown RBP31.04■■■□□ 2.56
TNFRSF1A-201ENST00000162749 RANGAP1P46060 587 aaPredicted RBP31.04■■■□□ 2.56
TNFRSF1A-201ENST00000162749 GRIN2BQ13224 1484 aa31.02■■■□□ 2.56
TNFRSF1A-201ENST00000162749 CTTNBP2Q8WZ74 1663 aa30.99■■■□□ 2.55
TNFRSF1A-201ENST00000162749 ADAMTS12P58397 1594 aa30.97■■■□□ 2.55
TNFRSF1A-201ENST00000162749 FHAD1B1AJZ9 1412 aa30.93■■■□□ 2.54
TNFRSF1A-201ENST00000162749 VPS8Q8N3P4 1428 aa30.92■■■□□ 2.54
TNFRSF1A-201ENST00000162749 ARAP1Q96P48 1450 aa30.9■■■□□ 2.54
TNFRSF1A-201ENST00000162749 ARHGAP35Q9NRY4 1499 aa30.9■■■□□ 2.54
TNFRSF1A-201ENST00000162749 SNAPC4Q5SXM2 1469 aa30.84■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms