RNA–Protein interactions for RNA: ENST00000627714.2

PTBP1-220, Transcript of polypyrimidine tract binding protein 1, humanhuman

TSL 5 BASIC

Gene PTBP1, Length 2,201 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTBP1-220ENST00000627714 NISCHQ9Y2I1 1504 aa39.9■■■■□ 3.98
PTBP1-220ENST00000627714 CCDC180Q9P1Z9 1646 aa34.11■■■■□ 3.05
PTBP1-220ENST00000627714 ZCCHC6Q5VYS8 1495 aaKnown RBP33.79■■■■□ 3
PTBP1-220ENST00000627714 SHROOM4Q9ULL8 1493 aa33.63■■■□□ 2.97
PTBP1-220ENST00000627714 SUPT5HO00267 1087 aaKnown RBP33.03■■■□□ 2.88
PTBP1-220ENST00000627714 DCAF1Q9Y4B6 1507 aa32.95■■■□□ 2.86
PTBP1-220ENST00000627714 DCAF8L2P0C7V8 631 aa32.64■■■□□ 2.82
PTBP1-220ENST00000627714 CHIC1Q5VXU3 224 aa32.28■■■□□ 2.76
PTBP1-220ENST00000627714 MYO15BQ96JP2 1530 aa32.1■■■□□ 2.73
PTBP1-220ENST00000627714 ABCC9O60706 1549 aa31.91■■■□□ 2.7
PTBP1-220ENST00000627714 SCRIBQ14160 1630 aa31.66■■■□□ 2.66
PTBP1-220ENST00000627714 RSF1Q96T23 1441 aaPredicted RBP31.5■■■□□ 2.63
PTBP1-220ENST00000627714 NACADO15069 1562 aa31.47■■■□□ 2.63
PTBP1-220ENST00000627714 HRCP23327 699 aa31.39■■■□□ 2.62
PTBP1-220ENST00000627714 RB1CC1Q8TDY2 1594 aa31.29■■■□□ 2.6
PTBP1-220ENST00000627714 PCGF6Q9BYE7 350 aa31.2■■■□□ 2.58
PTBP1-220ENST00000627714 LOC105371045A0A1W2PR82 267 aa31.14■■■□□ 2.58
PTBP1-220ENST00000627714 CECR2Q9BXF3 1484 aa30.93■■■□□ 2.54
PTBP1-220ENST00000627714 TRIM41Q8WV44 630 aa30.92■■■□□ 2.54
PTBP1-220ENST00000627714 MROH2BQ7Z745 1585 aa30.91■■■□□ 2.54
PTBP1-220ENST00000627714 TRIM26Q12899 539 aaPredicted RBP30.81■■■□□ 2.52
PTBP1-220ENST00000627714 WIZO95785 1651 aa30.74■■■□□ 2.51
PTBP1-220ENST00000627714 BAZ1AQ9NRL2 1556 aaPredicted RBP30.73■■■□□ 2.51
PTBP1-220ENST00000627714 EIF4G1Q04637 1599 aaKnown RBP30.49■■■□□ 2.47
PTBP1-220ENST00000627714 FAM9AQ8IZU1 332 aaPredicted RBP30.44■■■□□ 2.46
PTBP1-220ENST00000627714 PPARGC1BQ86YN6 1023 aaKnown RBP30.43■■■□□ 2.46
PTBP1-220ENST00000627714 TOP2AP11388 1531 aaKnown RBP30.42■■■□□ 2.46
PTBP1-220ENST00000627714 SMARCA4P51532 1647 aa30.39■■■□□ 2.46
PTBP1-220ENST00000627714 UNC13AQ9UPW8 1703 aa30.35■■■□□ 2.45
PTBP1-220ENST00000627714 ZEB1P37275 1124 aaPredicted RBP30.3■■■□□ 2.44
PTBP1-220ENST00000627714 SMARCA2P51531 1590 aa30.19■■■□□ 2.42
PTBP1-220ENST00000627714 CCDC88BA6NC98 1476 aa30.16■■■□□ 2.42
PTBP1-220ENST00000627714 EHMT2Q96KQ7 1210 aa30■■■□□ 2.39
PTBP1-220ENST00000627714 ABCC8Q09428 1581 aa29.99■■■□□ 2.39
PTBP1-220ENST00000627714 BICRAQ9NZM4 1560 aa29.95■■■□□ 2.39
PTBP1-220ENST00000627714 PEG3Q9GZU2 1588 aa29.93■■■□□ 2.38
PTBP1-220ENST00000627714 EEA1Q15075 1411 aa29.9■■■□□ 2.38
PTBP1-220ENST00000627714 WRNQ14191 1432 aaPredicted RBP eCLIP29.82■■■□□ 2.363e-6■■■■□ 19.3
PTBP1-220ENST00000627714 TNIKQ9UKE5 1360 aa29.73■■■□□ 2.35
PTBP1-220ENST00000627714 SOGA1O94964 1423 aa29.71■■■□□ 2.35
PTBP1-220ENST00000627714 CEP162Q5TB80 1403 aa29.7■■■□□ 2.34
PTBP1-220ENST00000627714 PABPN1Q86U42 306 aaKnown RBP eCLIP29.68■■■□□ 2.342e-11■□□□□ 9.4
PTBP1-220ENST00000627714 CSRNP3Q8WYN3 585 aa29.63■■■□□ 2.33
PTBP1-220ENST00000627714 GOLGA3Q08378 1498 aa29.57■■■□□ 2.32
PTBP1-220ENST00000627714 ATAD2BQ9ULI0 1458 aa29.55■■■□□ 2.32
PTBP1-220ENST00000627714 RUSC2Q8N2Y8 1516 aa29.52■■■□□ 2.32
PTBP1-220ENST00000627714 BAZ1BQ9UIG0 1483 aaKnown RBP29.49■■■□□ 2.31
PTBP1-220ENST00000627714 SYNJ1O43426 1573 aa29.44■■■□□ 2.3
PTBP1-220ENST00000627714 KIF21BO75037 1637 aa29.44■■■□□ 2.3
PTBP1-220ENST00000627714 CEP164Q9UPV0 1460 aa29.42■■■□□ 2.3
PTBP1-220ENST00000627714 UBTFP17480 764 aaKnown RBP29.41■■■□□ 2.3
PTBP1-220ENST00000627714 CCER1Q8TC90 406 aaPredicted RBP29.4■■■□□ 2.3
PTBP1-220ENST00000627714 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.35■■■□□ 2.29
PTBP1-220ENST00000627714 TOP2BQ02880 1626 aa29.2■■■□□ 2.27
PTBP1-220ENST00000627714 CLIP1P30622 1438 aa29.15■■■□□ 2.26
PTBP1-220ENST00000627714 BIVM-ERCC5R4GMW8 1640 aa29.13■■■□□ 2.25
PTBP1-220ENST00000627714 HMGXB3Q12766 1538 aa29.12■■■□□ 2.25
PTBP1-220ENST00000627714 TTBK1Q5TCY1 1321 aaPredicted RBP29.1■■■□□ 2.25
PTBP1-220ENST00000627714 VPS8Q8N3P4 1428 aa29.09■■■□□ 2.25
PTBP1-220ENST00000627714 NCAPD3P42695 1498 aa29.05■■■□□ 2.24
PTBP1-220ENST00000627714 RAPGEF2Q9Y4G8 1499 aa29.04■■■□□ 2.24
PTBP1-220ENST00000627714 ERICH3Q5RHP9 1530 aa28.99■■■□□ 2.23
PTBP1-220ENST00000627714 PRXQ9BXM0 1461 aa28.88■■■□□ 2.21
PTBP1-220ENST00000627714 APLP2Q06481 763 aa28.88■■■□□ 2.21
PTBP1-220ENST00000627714 DIEXFQ68CQ4 756 aaKnown RBP28.86■■■□□ 2.21
PTBP1-220ENST00000627714 CUX1P39880 1505 aa28.8■■■□□ 2.2
PTBP1-220ENST00000627714 SCAF1Q9H7N4 1312 aaKnown RBP28.8■■■□□ 2.2
PTBP1-220ENST00000627714 CFTRP13569 1480 aa28.8■■■□□ 2.2
PTBP1-220ENST00000627714 KIF27Q86VH2 1401 aa28.75■■■□□ 2.19
PTBP1-220ENST00000627714 PRDM2Q13029 1718 aa28.72■■■□□ 2.19
PTBP1-220ENST00000627714 ZNF316A6NFI3 1004 aaPredicted RBP28.7■■■□□ 2.18
PTBP1-220ENST00000627714 HNRNPUL2Q1KMD3 747 aaKnown RBP28.69■■■□□ 2.18
PTBP1-220ENST00000627714 ARAP1Q96P48 1450 aa28.68■■■□□ 2.18
PTBP1-220ENST00000627714 ACIN1Q9UKV3 1341 aaKnown RBP28.66■■■□□ 2.18
PTBP1-220ENST00000627714 CENPBP07199 599 aaPredicted RBP28.61■■■□□ 2.17
PTBP1-220ENST00000627714 PELP1Q8IZL8 1130 aaKnown RBP28.58■■■□□ 2.17
PTBP1-220ENST00000627714 RANGAP1P46060 587 aaPredicted RBP28.57■■■□□ 2.16
PTBP1-220ENST00000627714 CLSPNQ9HAW4 1339 aa28.52■■■□□ 2.16
PTBP1-220ENST00000627714 NEUROD1Q13562 356 aa28.5■■■□□ 2.15
PTBP1-220ENST00000627714 RRBP1Q9P2E9 1410 aaKnown RBP28.44■■■□□ 2.14
PTBP1-220ENST00000627714 CADPSQ9ULU8 1353 aa28.43■■■□□ 2.14
PTBP1-220ENST00000627714 ARHGAP35Q9NRY4 1499 aa28.43■■■□□ 2.14
PTBP1-220ENST00000627714 CUX2O14529 1486 aa28.37■■■□□ 2.13
PTBP1-220ENST00000627714 KANK4Q5T7N3 995 aaPredicted RBP28.36■■■□□ 2.13
PTBP1-220ENST00000627714 IGF1RP08069 1367 aa28.34■■■□□ 2.13
PTBP1-220ENST00000627714 DHX57Q6P158 1386 aaKnown RBP28.33■■■□□ 2.13
PTBP1-220ENST00000627714 MAP3K1Q13233 1512 aa28.32■■■□□ 2.12
PTBP1-220ENST00000627714 FGD5Q6ZNL6 1462 aa28.28■■■□□ 2.12
PTBP1-220ENST00000627714 CCNB3Q8WWL7 1395 aa28.26■■■□□ 2.11
PTBP1-220ENST00000627714 CARMIL1Q5VZK9 1371 aa28.24■■■□□ 2.11
PTBP1-220ENST00000627714 GTF3C3Q9Y5Q9 886 aa28.23■■■□□ 2.11
PTBP1-220ENST00000627714 TIAM1Q13009 1591 aa28.2■■■□□ 2.11
PTBP1-220ENST00000627714 CC2D2AQ9P2K1 1620 aa28.19■■■□□ 2.1
PTBP1-220ENST00000627714 MIER1Q8N108 512 aa28.15■■■□□ 2.1
PTBP1-220ENST00000627714 FANCD2Q9BXW9 1451 aa28.14■■■□□ 2.09
PTBP1-220ENST00000627714 FHAD1B1AJZ9 1412 aa28.12■■■□□ 2.09
PTBP1-220ENST00000627714 DNMBPQ6XZF7 1577 aa28.11■■■□□ 2.09
PTBP1-220ENST00000627714 LRRC9Q6ZRR7 1453 aa28.06■■■□□ 2.08
PTBP1-220ENST00000627714 CFAP43Q8NDM7 1665 aa28.05■■■□□ 2.08
PTBP1-220ENST00000627714 ABCA10Q8WWZ4 1543 aa28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms