Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 NNT-202ENST00000344920 4310 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.427e-7■■■□□ 14.8
YBX3P16989 NNT-208ENST00000512996 4288 ntTSL 5 BASIC10.47□□□□□ -0.737e-7■■■□□ 14.8
YBX3P16989 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.157e-7■■■□□ 14.8
YBX3P16989 C9orf16-204ENST00000492588 1570 ntTSL 521.2■□□□□ 0.982e-9■■■□□ 14.8
YBX3P16989 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.792e-9■■■□□ 14.8
YBX3P16989 CAPNS1-208ENST00000589162 701 ntTSL 37.37□□□□□ -1.234e-7■■■□□ 14.8
YBX3P16989 POLR1E-203ENST00000442009 1805 ntTSL 221.34■■□□□ 1.016e-7■■■□□ 14.8
YBX3P16989 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.336e-7■■■□□ 14.8
YBX3P16989 POLR1E-201ENST00000377792 2229 ntTSL 2 BASIC11.3□□□□□ -0.66e-7■■■□□ 14.8
YBX3P16989 CDK16-216ENST00000520893 943 ntTSL 526.96■■□□□ 1.913e-7■■■□□ 14.8
YBX3P16989 CDK16-213ENST00000519758 991 ntTSL 322.94■■□□□ 1.263e-7■■■□□ 14.8
YBX3P16989 CDK16-219ENST00000523034 454 ntTSL 321.13■□□□□ 0.973e-7■■■□□ 14.8
YBX3P16989 CDK16-212ENST00000518391 785 ntTSL 321.02■□□□□ 0.963e-7■■■□□ 14.8
YBX3P16989 DDB1-214ENST00000539426 805 ntTSL 315.05■□□□□ -04e-9■■■□□ 14.8
YBX3P16989 DDB1-221ENST00000543162 575 ntTSL 412.8□□□□□ -0.364e-9■■■□□ 14.8
YBX3P16989 DDB1-208ENST00000537120 1215 ntTSL 211.22□□□□□ -0.614e-9■■■□□ 14.8
YBX3P16989 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.262e-7■■■□□ 14.8
YBX3P16989 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.612e-7■■■□□ 14.8
YBX3P16989 SH3TC1-214ENST00000508183 1410 ntTSL 1 (best)24.29■■□□□ 1.484e-6■■■□□ 14.8
YBX3P16989 SH3TC1-220ENST00000511002 1124 ntTSL 520.41■□□□□ 0.864e-6■■■□□ 14.8
YBX3P16989 SH3TC1-223ENST00000513495 600 ntTSL 419.42■□□□□ 0.74e-6■■■□□ 14.8
YBX3P16989 SH3TC1-210ENST00000506360 5829 ntTSL 216.55■□□□□ 0.244e-6■■■□□ 14.8
YBX3P16989 SH3TC1-204ENST00000502350 2258 ntTSL 216.22■□□□□ 0.194e-6■■■□□ 14.8
YBX3P16989 SH3TC1-206ENST00000502669 3484 ntTSL 1 (best)15.36■□□□□ 0.054e-6■■■□□ 14.8
YBX3P16989 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.164e-6■■■□□ 14.8
YBX3P16989 SH3TC1-225ENST00000515682 4293 ntTSL 213.72□□□□□ -0.214e-6■■■□□ 14.8
YBX3P16989 SH3TC1-205ENST00000502559 3798 ntTSL 213.12□□□□□ -0.314e-6■■■□□ 14.8
YBX3P16989 STT3B-203ENST00000436236 1074 ntTSL 317.92■□□□□ 0.461e-9■■■□□ 14.8
YBX3P16989 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC25.42■■□□□ 1.664e-6■■■□□ 14.8
YBX3P16989 B4GALT1-201ENST00000379731 4201 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.474e-6■■■□□ 14.8
YBX3P16989 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC6.99□□□□□ -1.292e-7■■■□□ 14.8
YBX3P16989 CNOT1-211ENST00000567188 7830 ntTSL 1 (best)6.5□□□□□ -1.372e-7■■■□□ 14.8
YBX3P16989 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.72e-7■■■□□ 14.8
YBX3P16989 PGD-209ENST00000496718 506 ntTSL 214.68□□□□□ -0.066e-9■■■□□ 14.8
YBX3P16989 RPL36-206ENST00000582380 542 ntTSL 524.14■■□□□ 1.458e-43■■■□□ 14.8
YBX3P16989 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.091e-11■■■□□ 14.8
YBX3P16989 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.091e-11■■■□□ 14.8
YBX3P16989 PPDPF-204ENST00000473620 478 ntTSL 225.23■■□□□ 1.631e-27■■■□□ 14.8
YBX3P16989 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC20.17■□□□□ 0.821e-27■■■□□ 14.8
YBX3P16989 COASY-213ENST00000591753 2225 ntTSL 1 (best)18.72■□□□□ 0.594e-6■■■□□ 14.8
YBX3P16989 TRAPPC1-204ENST00000571947 306 ntTSL 36.94□□□□□ -1.33e-7■■■□□ 14.8
YBX3P16989 ACVR2B-203ENST00000465020 1666 ntTSL 221.21■□□□□ 0.991e-8■■■□□ 14.8
YBX3P16989 ACVR2B-202ENST00000461232 5370 ntTSL 1 (best)13.87□□□□□ -0.191e-8■■■□□ 14.8
YBX3P16989 MAGEC2-201ENST00000247452 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.313e-6■■■□□ 14.8
YBX3P16989 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.052e-8■■■□□ 14.8
YBX3P16989 E2F3-203ENST00000613242 4094 ntTSL 5 BASIC12.31□□□□□ -0.442e-8■■■□□ 14.8
YBX3P16989 E2F3-202ENST00000535432 4425 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.772e-8■■■□□ 14.8
YBX3P16989 DNAAF5-205ENST00000440747 2350 ntAPPRIS ALT2 TSL 217.25■□□□□ 0.355e-6■■■□□ 14.8
YBX3P16989 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC17.2■□□□□ 0.345e-6■■■□□ 14.8
YBX3P16989 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.155e-6■■■□□ 14.8
YBX3P16989 YIPF3-201ENST00000372417 406 ntTSL 211.99□□□□□ -0.493e-8■■■□□ 14.8
YBX3P16989 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.249e-7■■■□□ 14.8
YBX3P16989 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.014e-23■■■□□ 14.8
YBX3P16989 HSP90AA1-202ENST00000334701 3510 ntTSL 1 (best) BASIC12.8□□□□□ -0.364e-23■■■□□ 14.8
YBX3P16989 PLOD3-201ENST00000223127 2920 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.122e-6■■■□□ 14.8
YBX3P16989 DDX10-201ENST00000322536 3264 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.653e-6■■■□□ 14.8
YBX3P16989 MYH9-202ENST00000401701 789 ntTSL 1 (best) BASIC16.23■□□□□ 0.198e-7■■■□□ 14.8
YBX3P16989 PSMA5-204ENST00000490870 1667 ntTSL 1 (best)13.32□□□□□ -0.282e-17■■■□□ 14.8
YBX3P16989 PSMA5-206ENST00000538610 1504 ntTSL 1 (best) BASIC11.65□□□□□ -0.552e-17■■■□□ 14.8
YBX3P16989 PSMA5-202ENST00000477897 275 ntTSL 23.79□□□□□ -1.82e-17■■■□□ 14.8
YBX3P16989 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.47■■□□□ 1.353e-7■■■□□ 14.8
YBX3P16989 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.283e-7■■■□□ 14.8
YBX3P16989 RNPEP-206ENST00000471105 2093 ntTSL 1 (best)15.42■□□□□ 0.063e-7■■■□□ 14.8
YBX3P16989 SRPK1-201ENST00000346162 4762 ntTSL 215.67■□□□□ 0.14e-7■■■□□ 14.8
YBX3P16989 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.034e-7■■■□□ 14.8
YBX3P16989 SRPK1-202ENST00000361690 4286 ntTSL 1 (best)11.32□□□□□ -0.64e-7■■■□□ 14.8
YBX3P16989 SRPK1-205ENST00000423325 4357 ntTSL 2 BASIC10.51□□□□□ -0.734e-7■■■□□ 14.8
YBX3P16989 MCM2-202ENST00000468414 1076 ntTSL 215.93■□□□□ 0.144e-11■■■□□ 14.8
YBX3P16989 GYPB-206ENST00000506516 473 ntTSL 1 (best)9.27□□□□□ -0.936e-7■■■□□ 14.8
YBX3P16989 GYPB-204ENST00000504951 632 ntTSL 1 (best)8.77□□□□□ -1.016e-7■■■□□ 14.8
YBX3P16989 GYPB-212ENST00000511198 444 ntTSL 1 (best)8.56□□□□□ -1.046e-7■■■□□ 14.8
YBX3P16989 GYPB-205ENST00000505583 583 ntTSL 1 (best)8.2□□□□□ -1.16e-7■■■□□ 14.8
YBX3P16989 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC8.2□□□□□ -1.16e-7■■■□□ 14.8
YBX3P16989 GYPB-215ENST00000513677 221 ntTSL 1 (best)8.16□□□□□ -1.16e-7■■■□□ 14.8
YBX3P16989 GYPB-208ENST00000507009 388 ntTSL 1 (best)8.16□□□□□ -1.16e-7■■■□□ 14.8
YBX3P16989 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC7.49□□□□□ -1.216e-7■■■□□ 14.8
YBX3P16989 GYPB-203ENST00000503255 486 ntTSL 1 (best)7.36□□□□□ -1.236e-7■■■□□ 14.8
YBX3P16989 GYPB-211ENST00000510196 508 ntTSL 1 (best)6.19□□□□□ -1.426e-7■■■□□ 14.8
YBX3P16989 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC6.19□□□□□ -1.426e-7■■■□□ 14.8
YBX3P16989 GYPB-214ENST00000513557 277 ntTSL 1 (best)5.35□□□□□ -1.556e-7■■■□□ 14.8
YBX3P16989 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.726e-7■■■□□ 14.8
YBX3P16989 GYPB-207ENST00000506679 606 ntTSL 1 (best)4.25□□□□□ -1.736e-7■■■□□ 14.8
YBX3P16989 MCM7-211ENST00000491245 648 ntTSL 1 (best)12.88□□□□□ -0.352e-11■■■□□ 14.8
YBX3P16989 GRHPR-207ENST00000491488 602 ntTSL 524.54■■□□□ 1.521e-7■■■□□ 14.8
YBX3P16989 GRHPR-202ENST00000377824 1844 ntTSL 219.67■□□□□ 0.741e-7■■■□□ 14.8
YBX3P16989 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.23■□□□□ 0.511e-7■■■□□ 14.8
YBX3P16989 PUF60-216ENST00000531897 785 ntTSL 528.39■■■□□ 2.143e-9■■■□□ 14.8
YBX3P16989 PUF60-217ENST00000531951 973 ntTSL 323.08■■□□□ 1.293e-9■■■□□ 14.8
YBX3P16989 PUF60-207ENST00000526459 1003 ntTSL 220.53■□□□□ 0.883e-9■■■□□ 14.8
YBX3P16989 PUF60-212ENST00000528320 922 ntTSL 220.53■□□□□ 0.883e-9■■■□□ 14.8
YBX3P16989 PUF60-215ENST00000529999 867 ntTSL 319.15■□□□□ 0.663e-9■■■□□ 14.8
YBX3P16989 PUF60-205ENST00000524570 1934 ntTSL 218.92■□□□□ 0.623e-9■■■□□ 14.8
YBX3P16989 PUF60-211ENST00000527744 1007 ntTSL 218.58■□□□□ 0.563e-9■■■□□ 14.8
YBX3P16989 MTFR1L-217ENST00000526158 815 ntTSL 330.58■■■□□ 2.496e-7■■■□□ 14.8
YBX3P16989 MTFR1L-206ENST00000464008 1201 ntTSL 530.58■■■□□ 2.496e-7■■■□□ 14.8
YBX3P16989 MTFR1L-209ENST00000472643 838 ntTSL 323.06■■□□□ 1.286e-7■■■□□ 14.8
YBX3P16989 MTFR1L-223ENST00000533762 722 ntTSL 522■■□□□ 1.116e-7■■■□□ 14.8
YBX3P16989 MTFR1L-220ENST00000529116 555 ntTSL 421.63■■□□□ 1.056e-7■■■□□ 14.8
YBX3P16989 MTFR1L-212ENST00000488327 541 ntTSL 421.63■■□□□ 1.056e-7■■■□□ 14.8
YBX3P16989 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC21.63■■□□□ 1.056e-7■■■□□ 14.8
Retrieved 100 of 29,075 protein–RNA pairs in 381.8 ms