RNA–Protein interactions for RNA: ENST00000223127.7

PLOD3-201, Transcript of procollagen-lysine,2-oxoglutarate 5-dioxygenase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PLOD3, Length 2,920 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PLOD3-201ENST00000223127 NISCHQ9Y2I1 1504 aa28.29■■■□□ 2.12
PLOD3-201ENST00000223127 CCDC180Q9P1Z9 1646 aa24.34■■□□□ 1.49
PLOD3-201ENST00000223127 ZCCHC6Q5VYS8 1495 aaKnown RBP23.79■■□□□ 1.4
PLOD3-201ENST00000223127 DCAF8L2P0C7V8 631 aa23.74■■□□□ 1.39
PLOD3-201ENST00000223127 SHROOM4Q9ULL8 1493 aa23.68■■□□□ 1.38
PLOD3-201ENST00000223127 DCAF1Q9Y4B6 1507 aa23.2■■□□□ 1.3
PLOD3-201ENST00000223127 ABCC9O60706 1549 aa23.18■■□□□ 1.3
PLOD3-201ENST00000223127 SUPT5HO00267 1087 aaKnown RBP22.92■■□□□ 1.26
PLOD3-201ENST00000223127 MYO15BQ96JP2 1530 aa22.78■■□□□ 1.24
PLOD3-201ENST00000223127 SCRIBQ14160 1630 aa22.73■■□□□ 1.23
PLOD3-201ENST00000223127 NACADO15069 1562 aa22.69■■□□□ 1.22
PLOD3-201ENST00000223127 RB1CC1Q8TDY2 1594 aa22.48■■□□□ 1.19
PLOD3-201ENST00000223127 RSF1Q96T23 1441 aaPredicted RBP22.14■■□□□ 1.13
PLOD3-201ENST00000223127 CECR2Q9BXF3 1484 aa22.11■■□□□ 1.13
PLOD3-201ENST00000223127 PABPN1Q86U42 306 aaKnown RBP eCLIP22.05■■□□□ 1.12
PLOD3-201ENST00000223127 UNC13AQ9UPW8 1703 aa22.04■■□□□ 1.12
PLOD3-201ENST00000223127 MROH2BQ7Z745 1585 aa21.96■■□□□ 1.11
PLOD3-201ENST00000223127 CHIC1Q5VXU3 224 aa21.92■■□□□ 1.1
PLOD3-201ENST00000223127 BICRAQ9NZM4 1560 aa21.84■■□□□ 1.09
PLOD3-201ENST00000223127 WIZO95785 1651 aa21.79■■□□□ 1.08
PLOD3-201ENST00000223127 BAZ1AQ9NRL2 1556 aaPredicted RBP21.79■■□□□ 1.08
PLOD3-201ENST00000223127 SMARCA4P51532 1647 aa21.67■■□□□ 1.06
PLOD3-201ENST00000223127 HRCP23327 699 aa21.67■■□□□ 1.06
PLOD3-201ENST00000223127 TOP2AP11388 1531 aaKnown RBP21.45■■□□□ 1.03
PLOD3-201ENST00000223127 TRIM41Q8WV44 630 aa21.41■■□□□ 1.02
PLOD3-201ENST00000223127 CCDC88BA6NC98 1476 aa21.36■■□□□ 1.01
PLOD3-201ENST00000223127 SMARCA2P51531 1590 aa21.31■■□□□ 1
PLOD3-201ENST00000223127 ATAD2BQ9ULI0 1458 aa21.3■■□□□ 1
PLOD3-201ENST00000223127 PEG3Q9GZU2 1588 aa21.27■■□□□ 1
PLOD3-201ENST00000223127 LOC105371045A0A1W2PR82 267 aa21.26■□□□□ 0.99
PLOD3-201ENST00000223127 PCGF6Q9BYE7 350 aa21.26■□□□□ 0.99
PLOD3-201ENST00000223127 BAZ1BQ9UIG0 1483 aaKnown RBP21.22■□□□□ 0.99
PLOD3-201ENST00000223127 FAM9AQ8IZU1 332 aaPredicted RBP21.22■□□□□ 0.99
PLOD3-201ENST00000223127 EIF4G1Q04637 1599 aaKnown RBP21.19■□□□□ 0.98
PLOD3-201ENST00000223127 PPARGC1BQ86YN6 1023 aaKnown RBP21.18■□□□□ 0.98
PLOD3-201ENST00000223127 ABCC8Q09428 1581 aa21.08■□□□□ 0.97
PLOD3-201ENST00000223127 EHMT2Q96KQ7 1210 aa21.07■□□□□ 0.96
PLOD3-201ENST00000223127 NCAPD3P42695 1498 aa21.01■□□□□ 0.95
PLOD3-201ENST00000223127 HMGXB3Q12766 1538 aa20.93■□□□□ 0.94
PLOD3-201ENST00000223127 WRNQ14191 1432 aaPredicted RBP eCLIP20.84■□□□□ 0.93
PLOD3-201ENST00000223127 CC2D2AQ9P2K1 1620 aa20.84■□□□□ 0.93
PLOD3-201ENST00000223127 SOGA1O94964 1423 aa20.77■□□□□ 0.92
PLOD3-201ENST00000223127 SYNJ1O43426 1573 aa20.72■□□□□ 0.91
PLOD3-201ENST00000223127 TRIM26Q12899 539 aaPredicted RBP20.7■□□□□ 0.9
PLOD3-201ENST00000223127 RUSC2Q8N2Y8 1516 aa20.69■□□□□ 0.9
PLOD3-201ENST00000223127 CFTRP13569 1480 aa20.65■□□□□ 0.9
PLOD3-201ENST00000223127 CSRNP3Q8WYN3 585 aa20.61■□□□□ 0.89
PLOD3-201ENST00000223127 CADPSQ9ULU8 1353 aa20.57■□□□□ 0.88
PLOD3-201ENST00000223127 EEA1Q15075 1411 aa20.54■□□□□ 0.88
PLOD3-201ENST00000223127 DNAJC5BQ9UF47 199 aa20.53■□□□□ 0.88
PLOD3-201ENST00000223127 TOP2BQ02880 1626 aa20.52■□□□□ 0.88
PLOD3-201ENST00000223127 UBTFP17480 764 aaKnown RBP20.51■□□□□ 0.87
PLOD3-201ENST00000223127 CUX1P39880 1505 aa20.49■□□□□ 0.87
PLOD3-201ENST00000223127 PELP1Q8IZL8 1130 aaKnown RBP20.47■□□□□ 0.87
PLOD3-201ENST00000223127 ZEB1P37275 1124 aaPredicted RBP20.44■□□□□ 0.86
PLOD3-201ENST00000223127 BIVM-ERCC5R4GMW8 1640 aa20.44■□□□□ 0.86
PLOD3-201ENST00000223127 NESP48681 1621 aa20.42■□□□□ 0.86
PLOD3-201ENST00000223127 PRDM2Q13029 1718 aa20.38■□□□□ 0.85
PLOD3-201ENST00000223127 GOLGA3Q08378 1498 aa20.37■□□□□ 0.85
PLOD3-201ENST00000223127 FANCD2Q9BXW9 1451 aa20.37■□□□□ 0.85
PLOD3-201ENST00000223127 TNIKQ9UKE5 1360 aa20.36■□□□□ 0.85
PLOD3-201ENST00000223127 CEP162Q5TB80 1403 aa20.35■□□□□ 0.85
PLOD3-201ENST00000223127 SCAF1Q9H7N4 1312 aaKnown RBP20.35■□□□□ 0.85
PLOD3-201ENST00000223127 CEP164Q9UPV0 1460 aa20.33■□□□□ 0.85
PLOD3-201ENST00000223127 RANGAP1P46060 587 aaPredicted RBP20.3■□□□□ 0.84
PLOD3-201ENST00000223127 RAPGEF2Q9Y4G8 1499 aa20.29■□□□□ 0.84
PLOD3-201ENST00000223127 KIF27Q86VH2 1401 aa20.26■□□□□ 0.83
PLOD3-201ENST00000223127 KIF21BO75037 1637 aa20.26■□□□□ 0.83
PLOD3-201ENST00000223127 FGD5Q6ZNL6 1462 aa20.25■□□□□ 0.83
PLOD3-201ENST00000223127 CUX2O14529 1486 aa20.21■□□□□ 0.83
PLOD3-201ENST00000223127 LAMC3Q9Y6N6 1575 aa20.21■□□□□ 0.83
PLOD3-201ENST00000223127 TTBK1Q5TCY1 1321 aaPredicted RBP20.2■□□□□ 0.83
PLOD3-201ENST00000223127 PRXQ9BXM0 1461 aa20.15■□□□□ 0.82
PLOD3-201ENST00000223127 TOPBP1Q92547 1522 aa20.15■□□□□ 0.82
PLOD3-201ENST00000223127 PDS5BQ9NTI5 1447 aa20.14■□□□□ 0.81
PLOD3-201ENST00000223127 CLIP1P30622 1438 aa20.13■□□□□ 0.81
PLOD3-201ENST00000223127 RAD54L2Q9Y4B4 1467 aa20.13■□□□□ 0.81
PLOD3-201ENST00000223127 DNMBPQ6XZF7 1577 aa20.13■□□□□ 0.81
PLOD3-201ENST00000223127 POLA1P09884 1462 aaPredicted RBP20.09■□□□□ 0.81
PLOD3-201ENST00000223127 IGF1RP08069 1367 aa20.09■□□□□ 0.81
PLOD3-201ENST00000223127 URB2Q14146 1524 aaKnown RBP20.09■□□□□ 0.81
PLOD3-201ENST00000223127 ERICH3Q5RHP9 1530 aa20.07■□□□□ 0.8
PLOD3-201ENST00000223127 KIF21AQ7Z4S6 1674 aa20.03■□□□□ 0.8
PLOD3-201ENST00000223127 CARMIL1Q5VZK9 1371 aa20.01■□□□□ 0.79
PLOD3-201ENST00000223127 ABCA10Q8WWZ4 1543 aa19.98■□□□□ 0.79
PLOD3-201ENST00000223127 TDRD9Q8NDG6 1382 aaKnown RBP19.96■□□□□ 0.79
PLOD3-201ENST00000223127 VPS8Q8N3P4 1428 aa19.94■□□□□ 0.78
PLOD3-201ENST00000223127 ACIN1Q9UKV3 1341 aaKnown RBP19.91■□□□□ 0.78
PLOD3-201ENST00000223127 APLP2Q06481 763 aa19.9■□□□□ 0.78
PLOD3-201ENST00000223127 NEUROD1Q13562 356 aa19.86■□□□□ 0.77
PLOD3-201ENST00000223127 ARAP1Q96P48 1450 aa19.85■□□□□ 0.77
PLOD3-201ENST00000223127 MRC2Q9UBG0 1479 aa19.85■□□□□ 0.77
PLOD3-201ENST00000223127 GAPVD1Q14C86 1478 aa19.82■□□□□ 0.76
PLOD3-201ENST00000223127 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.81■□□□□ 0.76
PLOD3-201ENST00000223127 ARHGAP35Q9NRY4 1499 aa19.81■□□□□ 0.76
PLOD3-201ENST00000223127 ERCC6Q03468 1493 aa19.8■□□□□ 0.76
PLOD3-201ENST00000223127 WDR97A6NE52 1622 aa19.8■□□□□ 0.76
PLOD3-201ENST00000223127 P3H3Q8IVL6 736 aa19.79■□□□□ 0.76
PLOD3-201ENST00000223127 ABCA5Q8WWZ7 1642 aa19.76■□□□□ 0.75
PLOD3-201ENST00000223127 TARBP1Q13395 1621 aaKnown RBP19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms