RNA–Protein interactions for RNA: ENST00000511198.5

GYPB-212, Transcript of glycophorin B (MNS blood group), humanhuman

TSL 1 (best)

Gene GYPB, Length 444 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GYPB-212ENST00000511198 AEBP2Q6ZN18 517 aaPredicted RBP29.51■■■□□ 2.31
GYPB-212ENST00000511198 CHIC1Q5VXU3 224 aa28.47■■■□□ 2.15
GYPB-212ENST00000511198 PHF23Q9BUL5 403 aaPredicted RBP25.05■■□□□ 1.6
GYPB-212ENST00000511198 SENP3Q9H4L4 574 aaPredicted RBP25.03■■□□□ 1.6
GYPB-212ENST00000511198 FOXD1Q16676 465 aa23.32■■□□□ 1.32
GYPB-212ENST00000511198 PLPPR3Q6T4P5 718 aa22.94■■□□□ 1.26
GYPB-212ENST00000511198 PPP6R1Q9UPN7 881 aa22.21■■□□□ 1.15
GYPB-212ENST00000511198 ADRA2BP18089 450 aa22.14■■□□□ 1.13
GYPB-212ENST00000511198 PIAS4Q8N2W9 510 aaPredicted RBP21.86■■□□□ 1.09
GYPB-212ENST00000511198 MSH5O43196 834 aa21.58■■□□□ 1.05
GYPB-212ENST00000511198 POTEDQ86YR6 584 aa20.27■□□□□ 0.84
GYPB-212ENST00000511198 MAPK8IP2Q13387 824 aaPredicted RBP20.2■□□□□ 0.82
GYPB-212ENST00000511198 SCAF1Q9H7N4 1312 aaKnown RBP20.2■□□□□ 0.82
GYPB-212ENST00000511198 PPP4R3CPQ6ZMV5 832 aa20.19■□□□□ 0.82
GYPB-212ENST00000511198 DMRT2Q9Y5R5 561 aa19.95■□□□□ 0.78
GYPB-212ENST00000511198 CNKSR2Q8WXI2 1034 aa19.69■□□□□ 0.74
GYPB-212ENST00000511198 NCBP3Q53F19 620 aaKnown RBP19.52■□□□□ 0.72
GYPB-212ENST00000511198 HOXD11P31277 338 aaPredicted RBP19.43■□□□□ 0.7
GYPB-212ENST00000511198 RNF216Q9NWF9 866 aaPredicted RBP19.39■□□□□ 0.69
GYPB-212ENST00000511198 KCNA4P22459 653 aa19.36■□□□□ 0.69
GYPB-212ENST00000511198 NPM3O75607 178 aaKnown RBP19.3■□□□□ 0.68
GYPB-212ENST00000511198 DCAF8L1A6NGE4 600 aa19.04■□□□□ 0.64
GYPB-212ENST00000511198 DNAJC5BQ9UF47 199 aa18.82■□□□□ 0.6
GYPB-212ENST00000511198 RNF39Q9H2S5 420 aa18.5■□□□□ 0.55
GYPB-212ENST00000511198 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.45■□□□□ 0.54
GYPB-212ENST00000511198 SLC4A1APQ9BWU0 796 aaKnown RBP18.34■□□□□ 0.53
GYPB-212ENST00000511198 SLC4A2P04920 1241 aa18.33■□□□□ 0.52
GYPB-212ENST00000511198 C1QBPQ07021 282 aaKnown RBP18.23■□□□□ 0.51
GYPB-212ENST00000511198 CACNB1Q02641 598 aaPredicted RBP18.21■□□□□ 0.51
GYPB-212ENST00000511198 U3KPZ7 1027 aaPredicted RBP18.17■□□□□ 0.5
GYPB-212ENST00000511198 FOXD4L1Q9NU39 408 aa17.88■□□□□ 0.45
GYPB-212ENST00000511198 ZBTB22O15209 634 aa17.85■□□□□ 0.45
GYPB-212ENST00000511198 MYCNP04198 464 aaPredicted RBP17.8■□□□□ 0.44
GYPB-212ENST00000511198 SPINK5Q9NQ38 1064 aaPredicted RBP17.76■□□□□ 0.43
GYPB-212ENST00000511198 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.75■□□□□ 0.43
GYPB-212ENST00000511198 HNRNPUL2Q1KMD3 747 aaKnown RBP17.75■□□□□ 0.43
GYPB-212ENST00000511198 SAMD1Q6SPF0 538 aaPredicted RBP17.69■□□□□ 0.42
GYPB-212ENST00000511198 CAPN15O75808 1086 aa17.65■□□□□ 0.42
GYPB-212ENST00000511198 APLP2Q06481 763 aa17.63■□□□□ 0.41
GYPB-212ENST00000511198 TRHP20396 242 aaPredicted RBP17.49■□□□□ 0.39
GYPB-212ENST00000511198 DSG3P32926 999 aa17.49■□□□□ 0.39
GYPB-212ENST00000511198 ZNF219Q9P2Y4 722 aaPredicted RBP17.47■□□□□ 0.39
GYPB-212ENST00000511198 CSRNP3Q8WYN3 585 aa17.45■□□□□ 0.38
GYPB-212ENST00000511198 EHMT2Q96KQ7 1210 aa17.43■□□□□ 0.38
GYPB-212ENST00000511198 ATF5Q9Y2D1 282 aaPredicted RBP17.42■□□□□ 0.38
GYPB-212ENST00000511198 ABCB7O75027 752 aa17.31■□□□□ 0.36
GYPB-212ENST00000511198 ATXN8OSP0DMR3 200 aa17.3■□□□□ 0.36
GYPB-212ENST00000511198 POLA2Q14181 598 aa17.17■□□□□ 0.34
GYPB-212ENST00000511198 ZBTB12Q9Y330 459 aaPredicted RBP16.81■□□□□ 0.28
GYPB-212ENST00000511198 MKRN4PQ13434 485 aaPredicted RBP16.64■□□□□ 0.25
GYPB-212ENST00000511198 FBLN2P98095 1184 aa16.61■□□□□ 0.25
GYPB-212ENST00000511198 RBM42Q9BTD8 480 aaKnown RBP16.61■□□□□ 0.25
GYPB-212ENST00000511198 OSCARQ8IYS5 282 aa16.59■□□□□ 0.25
GYPB-212ENST00000511198 AKT1S1Q96B36 256 aa16.37■□□□□ 0.21
GYPB-212ENST00000511198 SPDYE2BA6NHP3 402 aa16.36■□□□□ 0.21
GYPB-212ENST00000511198 SPDYE6P0CI01 402 aa16.36■□□□□ 0.21
GYPB-212ENST00000511198 SPDYE2Q495Y8 402 aa16.36■□□□□ 0.21
GYPB-212ENST00000511198 ZNF692Q9BU19 519 aaPredicted RBP16.24■□□□□ 0.19
GYPB-212ENST00000511198 REM2Q8IYK8 340 aaPredicted RBP16.23■□□□□ 0.19
GYPB-212ENST00000511198 SSUH2Q9Y2M2 353 aa16.23■□□□□ 0.19
GYPB-212ENST00000511198 CHRDL2Q6WN34 429 aa16.08■□□□□ 0.16
GYPB-212ENST00000511198 SPDYE4A6NLX3 237 aa16.05■□□□□ 0.16
GYPB-212ENST00000511198 PITPNM1O00562 1244 aa16.05■□□□□ 0.16
GYPB-212ENST00000511198 PABPN1Q86U42 306 aaKnown RBP eCLIP16.02■□□□□ 0.16
GYPB-212ENST00000511198 POTEHQ6S545 545 aa15.96■□□□□ 0.15
GYPB-212ENST00000511198 SPDYE1Q8NFV5 336 aaPredicted RBP15.94■□□□□ 0.14
GYPB-212ENST00000511198 CLEC11AQ9Y240 323 aa15.88■□□□□ 0.13
GYPB-212ENST00000511198 FXR2P51116 673 aaKnown RBP eCLIP15.83■□□□□ 0.12
GYPB-212ENST00000511198 PIP4P2Q8N4L2 257 aa15.83■□□□□ 0.12
GYPB-212ENST00000511198 PROM2Q8N271 834 aa15.8■□□□□ 0.12
GYPB-212ENST00000511198 FKBP8Q14318 412 aa15.74■□□□□ 0.11
GYPB-212ENST00000511198 PRR29P0C7W0 189 aa15.7■□□□□ 0.1
GYPB-212ENST00000511198 STAG3Q9UJ98 1225 aa15.67■□□□□ 0.1
GYPB-212ENST00000511198 PRKAR2AP13861 404 aaKnown RBP15.63■□□□□ 0.09
GYPB-212ENST00000511198 CHADLQ6NUI6 762 aa15.57■□□□□ 0.08
GYPB-212ENST00000511198 CREBZFQ9NS37 354 aa15.47■□□□□ 0.07
GYPB-212ENST00000511198 FARP1Q9Y4F1 1045 aaPredicted RBP15.38■□□□□ 0.05
GYPB-212ENST00000511198 HAX1O00165 279 aa15.37■□□□□ 0.05
GYPB-212ENST00000511198 C19orf67A6NJJ6 358 aa15.3■□□□□ 0.04
GYPB-212ENST00000511198 MNX1P50219 401 aaPredicted RBP15.3■□□□□ 0.04
GYPB-212ENST00000511198 EVX2Q03828 476 aa15.3■□□□□ 0.04
GYPB-212ENST00000511198 FBXO3Q9UK99 471 aa15.25■□□□□ 0.03
GYPB-212ENST00000511198 MIER1Q8N108 512 aa15.24■□□□□ 0.03
GYPB-212ENST00000511198 SP7Q8TDD2 431 aaPredicted RBP15.19■□□□□ 0.02
GYPB-212ENST00000511198 PLCD3Q8N3E9 789 aa15.16■□□□□ 0.02
GYPB-212ENST00000511198 NPM1P06748 294 aaKnown RBP eCLIP15.15■□□□□ 0.02
GYPB-212ENST00000511198 CD44P16070 742 aaKnown RBP15.15■□□□□ 0.02
GYPB-212ENST00000511198 PLEKHG5O94827 1062 aa15.13■□□□□ 0.01
GYPB-212ENST00000511198 VASPP50552 380 aaPredicted RBP15.08■□□□□ 0
GYPB-212ENST00000511198 ZBTB47Q9UFB7 747 aaPredicted RBP15.01□□□□□ -0.01
GYPB-212ENST00000511198 ZRANB1Q9UGI0 708 aa15.01□□□□□ -0.01
GYPB-212ENST00000511198 ZNF579Q8NAF0 562 aaKnown RBP14.96□□□□□ -0.01
GYPB-212ENST00000511198 GABBR2O75899 941 aa14.94□□□□□ -0.02
GYPB-212ENST00000511198 PAK3O75914 559 aaPredicted RBP14.94□□□□□ -0.02
GYPB-212ENST00000511198 NUBP1P53384 320 aa14.94□□□□□ -0.02
GYPB-212ENST00000511198 RASEFQ8IZ41 740 aa14.94□□□□□ -0.02
GYPB-212ENST00000511198 TSPYL2Q9H2G4 693 aaPredicted RBP14.9□□□□□ -0.02
GYPB-212ENST00000511198 IFNLR1Q8IU57 520 aaPredicted RBP14.89□□□□□ -0.03
GYPB-212ENST00000511198 KLHL34Q8N239 644 aa14.86□□□□□ -0.03
GYPB-212ENST00000511198 PHF12Q96QT6 1004 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms