RNA–Protein interactions for RNA: ENST00000539426.5

DDB1-214, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 3

Gene DDB1, Length 805 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-214ENST00000539426 NISCHQ9Y2I1 1504 aa27.46■■□□□ 1.99
DDB1-214ENST00000539426 ABCC9O60706 1549 aa24.68■■□□□ 1.54
DDB1-214ENST00000539426 CCDC180Q9P1Z9 1646 aa24.66■■□□□ 1.54
DDB1-214ENST00000539426 RB1CC1Q8TDY2 1594 aa23.46■■□□□ 1.35
DDB1-214ENST00000539426 NACADO15069 1562 aa23.29■■□□□ 1.32
DDB1-214ENST00000539426 DNAJC5BQ9UF47 199 aa23.18■■□□□ 1.3
DDB1-214ENST00000539426 DCAF8L2P0C7V8 631 aa23.13■■□□□ 1.29
DDB1-214ENST00000539426 UNC13AQ9UPW8 1703 aa23.02■■□□□ 1.28
DDB1-214ENST00000539426 MYO15BQ96JP2 1530 aa22.97■■□□□ 1.27
DDB1-214ENST00000539426 PABPN1Q86U42 306 aaKnown RBP eCLIP22.96■■□□□ 1.27
DDB1-214ENST00000539426 BICRAQ9NZM4 1560 aa22.84■■□□□ 1.25
DDB1-214ENST00000539426 ZCCHC6Q5VYS8 1495 aaKnown RBP22.78■■□□□ 1.24
DDB1-214ENST00000539426 DCAF1Q9Y4B6 1507 aa22.67■■□□□ 1.22
DDB1-214ENST00000539426 SCRIBQ14160 1630 aa22.49■■□□□ 1.19
DDB1-214ENST00000539426 SHROOM4Q9ULL8 1493 aa22.45■■□□□ 1.18
DDB1-214ENST00000539426 CC2D2AQ9P2K1 1620 aa22.31■■□□□ 1.16
DDB1-214ENST00000539426 EIF4G1Q04637 1599 aaKnown RBP22.25■■□□□ 1.15
DDB1-214ENST00000539426 CECR2Q9BXF3 1484 aa22.22■■□□□ 1.15
DDB1-214ENST00000539426 NCAPD3P42695 1498 aa21.51■■□□□ 1.03
DDB1-214ENST00000539426 ATAD2BQ9ULI0 1458 aa21.45■■□□□ 1.03
DDB1-214ENST00000539426 SMARCA4P51532 1647 aa21.45■■□□□ 1.02
DDB1-214ENST00000539426 SMARCA2P51531 1590 aa21.38■■□□□ 1.01
DDB1-214ENST00000539426 HMGXB3Q12766 1538 aa21.36■■□□□ 1.01
DDB1-214ENST00000539426 BAZ1AQ9NRL2 1556 aaPredicted RBP21.31■■□□□ 1
DDB1-214ENST00000539426 ERCC6Q03468 1493 aa21.28■■□□□ 1
DDB1-214ENST00000539426 CUX2O14529 1486 aa21.26■□□□□ 0.99
DDB1-214ENST00000539426 DNAJC5Q9H3Z4 198 aa21.24■□□□□ 0.99
DDB1-214ENST00000539426 BAZ1BQ9UIG0 1483 aaKnown RBP21.24■□□□□ 0.99
DDB1-214ENST00000539426 PEG3Q9GZU2 1588 aa21.23■□□□□ 0.99
DDB1-214ENST00000539426 NESP48681 1621 aa21.22■□□□□ 0.99
DDB1-214ENST00000539426 MROH2BQ7Z745 1585 aa21.19■□□□□ 0.98
DDB1-214ENST00000539426 THOC2Q8NI27 1593 aaKnown RBP21.02■□□□□ 0.96
DDB1-214ENST00000539426 LAMC3Q9Y6N6 1575 aa21.02■□□□□ 0.96
DDB1-214ENST00000539426 KIF21AQ7Z4S6 1674 aa20.96■□□□□ 0.95
DDB1-214ENST00000539426 WIZO95785 1651 aa20.93■□□□□ 0.94
DDB1-214ENST00000539426 PDS5BQ9NTI5 1447 aa20.87■□□□□ 0.93
DDB1-214ENST00000539426 CADPSQ9ULU8 1353 aa20.85■□□□□ 0.93
DDB1-214ENST00000539426 MRC2Q9UBG0 1479 aa20.74■□□□□ 0.91
DDB1-214ENST00000539426 RSF1Q96T23 1441 aaPredicted RBP20.71■□□□□ 0.91
DDB1-214ENST00000539426 WDR62O43379 1518 aa20.7■□□□□ 0.9
DDB1-214ENST00000539426 TOP2AP11388 1531 aaKnown RBP20.65■□□□□ 0.9
DDB1-214ENST00000539426 CEP164Q9UPV0 1460 aa20.64■□□□□ 0.89
DDB1-214ENST00000539426 CFTRP13569 1480 aa20.62■□□□□ 0.89
DDB1-214ENST00000539426 FANCD2Q9BXW9 1451 aa20.62■□□□□ 0.89
DDB1-214ENST00000539426 URB2Q14146 1524 aaKnown RBP20.48■□□□□ 0.87
DDB1-214ENST00000539426 PRDM2Q13029 1718 aa20.46■□□□□ 0.87
DDB1-214ENST00000539426 CCDC88BA6NC98 1476 aa20.41■□□□□ 0.86
DDB1-214ENST00000539426 TRIM41Q8WV44 630 aa20.32■□□□□ 0.84
DDB1-214ENST00000539426 TOPBP1Q92547 1522 aa20.24■□□□□ 0.83
DDB1-214ENST00000539426 OSCARQ8IYS5 282 aa20.24■□□□□ 0.83
DDB1-214ENST00000539426 ZNF608Q9ULD9 1512 aaPredicted RBP20.23■□□□□ 0.83
DDB1-214ENST00000539426 IFT140Q96RY7 1462 aa20.23■□□□□ 0.83
DDB1-214ENST00000539426 DNMBPQ6XZF7 1577 aa20.17■□□□□ 0.82
DDB1-214ENST00000539426 ABCC8Q09428 1581 aa20.14■□□□□ 0.81
DDB1-214ENST00000539426 EIF4G3O43432 1585 aaKnown RBP20.12■□□□□ 0.81
DDB1-214ENST00000539426 TARBP1Q13395 1621 aaKnown RBP20.09■□□□□ 0.81
DDB1-214ENST00000539426 RIMBP3CA6NJZ7 1639 aa20.05■□□□□ 0.8
DDB1-214ENST00000539426 RIMBP3BA6NNM3 1639 aa20.05■□□□□ 0.8
DDB1-214ENST00000539426 RIMBP3Q9UFD9 1639 aa20.05■□□□□ 0.8
DDB1-214ENST00000539426 POLA1P09884 1462 aaPredicted RBP20.04■□□□□ 0.8
DDB1-214ENST00000539426 AQRO60306 1485 aaKnown RBP eCLIP20.03■□□□□ 0.81e-6■■■□□ 15.8
DDB1-214ENST00000539426 CHD1O14646 1710 aa20■□□□□ 0.79
DDB1-214ENST00000539426 ARHGEF11O15085 1522 aa19.98■□□□□ 0.79
DDB1-214ENST00000539426 RAD54L2Q9Y4B4 1467 aa19.97■□□□□ 0.79
DDB1-214ENST00000539426 SOGA1O94964 1423 aa19.91■□□□□ 0.78
DDB1-214ENST00000539426 FGD5Q6ZNL6 1462 aa19.91■□□□□ 0.78
DDB1-214ENST00000539426 CUX1P39880 1505 aa19.91■□□□□ 0.78
DDB1-214ENST00000539426 TDRD9Q8NDG6 1382 aaKnown RBP19.89■□□□□ 0.77
DDB1-214ENST00000539426 FBLN2P98095 1184 aa19.85■□□□□ 0.77
DDB1-214ENST00000539426 WDR97A6NE52 1622 aa19.84■□□□□ 0.77
DDB1-214ENST00000539426 SNAPC4Q5SXM2 1469 aa19.83■□□□□ 0.76
DDB1-214ENST00000539426 ARAP1Q96P48 1450 aa19.79■□□□□ 0.76
DDB1-214ENST00000539426 CYB5RLQ6IPT4 315 aa19.79■□□□□ 0.76
DDB1-214ENST00000539426 GRIN2BQ13224 1484 aa19.75■□□□□ 0.75
DDB1-214ENST00000539426 MAGI1Q96QZ7 1491 aaPredicted RBP19.75■□□□□ 0.75
DDB1-214ENST00000539426 SUPT5HO00267 1087 aaKnown RBP19.75■□□□□ 0.75
DDB1-214ENST00000539426 CLASP1Q7Z460 1538 aa19.75■□□□□ 0.75
DDB1-214ENST00000539426 PBRM1Q86U86 1689 aa19.72■□□□□ 0.75
DDB1-214ENST00000539426 SYNJ1O43426 1573 aa19.7■□□□□ 0.74
DDB1-214ENST00000539426 CHMP7Q8WUX9 453 aaPredicted RBP19.69■□□□□ 0.74
DDB1-214ENST00000539426 SYNJ2O15056 1496 aa19.68■□□□□ 0.74
DDB1-214ENST00000539426 GAPVD1Q14C86 1478 aa19.68■□□□□ 0.74
DDB1-214ENST00000539426 ABCA10Q8WWZ4 1543 aa19.68■□□□□ 0.74
DDB1-214ENST00000539426 ABCA5Q8WWZ7 1642 aa19.67■□□□□ 0.74
DDB1-214ENST00000539426 BIVM-ERCC5R4GMW8 1640 aa19.58■□□□□ 0.73
DDB1-214ENST00000539426 TOP2BQ02880 1626 aa19.56■□□□□ 0.72
DDB1-214ENST00000539426 WRNQ14191 1432 aaPredicted RBP eCLIP19.56■□□□□ 0.72
DDB1-214ENST00000539426 TRHP20396 242 aaPredicted RBP19.55■□□□□ 0.72
DDB1-214ENST00000539426 ADAMTS12P58397 1594 aa19.53■□□□□ 0.72
DDB1-214ENST00000539426 GRIN2AQ12879 1464 aa19.51■□□□□ 0.71
DDB1-214ENST00000539426 CEP170Q5SW79 1584 aa19.47■□□□□ 0.71
DDB1-214ENST00000539426 ERCC6L2Q5T890 1561 aa19.47■□□□□ 0.71
DDB1-214ENST00000539426 NUP160Q12769 1436 aa19.45■□□□□ 0.7
DDB1-214ENST00000539426 FHAD1B1AJZ9 1412 aa19.42■□□□□ 0.7
DDB1-214ENST00000539426 ERICH3Q5RHP9 1530 aa19.42■□□□□ 0.7
DDB1-214ENST00000539426 SHROOM2Q13796 1616 aa19.38■□□□□ 0.69
DDB1-214ENST00000539426 RUSC2Q8N2Y8 1516 aa19.25■□□□□ 0.67
DDB1-214ENST00000539426 PRG4Q92954 1404 aaPredicted RBP19.25■□□□□ 0.67
DDB1-214ENST00000539426 JPH4Q96JJ6 628 aa19.21■□□□□ 0.67
DDB1-214ENST00000539426 IGF1RP08069 1367 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms