RNA–Protein interactions for RNA: ENST00000543162.1

DDB1-221, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-221ENST00000543162 NISCHQ9Y2I1 1504 aa24.82■■□□□ 1.56
DDB1-221ENST00000543162 CCDC180Q9P1Z9 1646 aa21.82■■□□□ 1.08
DDB1-221ENST00000543162 ABCC9O60706 1549 aa20.88■□□□□ 0.93
DDB1-221ENST00000543162 ZCCHC6Q5VYS8 1495 aaKnown RBP20.78■□□□□ 0.92
DDB1-221ENST00000543162 DCAF8L2P0C7V8 631 aa20.6■□□□□ 0.89
DDB1-221ENST00000543162 DCAF1Q9Y4B6 1507 aa20.54■□□□□ 0.88
DDB1-221ENST00000543162 MYO15BQ96JP2 1530 aa20.43■□□□□ 0.86
DDB1-221ENST00000543162 NACADO15069 1562 aa20.4■□□□□ 0.86
DDB1-221ENST00000543162 RB1CC1Q8TDY2 1594 aa20.29■□□□□ 0.84
DDB1-221ENST00000543162 SHROOM4Q9ULL8 1493 aa20■□□□□ 0.79
DDB1-221ENST00000543162 SCRIBQ14160 1630 aa19.99■□□□□ 0.79
DDB1-221ENST00000543162 UNC13AQ9UPW8 1703 aa19.83■□□□□ 0.77
DDB1-221ENST00000543162 BICRAQ9NZM4 1560 aa19.65■□□□□ 0.74
DDB1-221ENST00000543162 PABPN1Q86U42 306 aaKnown RBP eCLIP19.61■□□□□ 0.73
DDB1-221ENST00000543162 CECR2Q9BXF3 1484 aa19.29■□□□□ 0.68
DDB1-221ENST00000543162 BAZ1AQ9NRL2 1556 aaPredicted RBP19.21■□□□□ 0.67
DDB1-221ENST00000543162 MROH2BQ7Z745 1585 aa19.15■□□□□ 0.66
DDB1-221ENST00000543162 SMARCA4P51532 1647 aa19.15■□□□□ 0.66
DDB1-221ENST00000543162 RSF1Q96T23 1441 aaPredicted RBP19.12■□□□□ 0.65
DDB1-221ENST00000543162 SUPT5HO00267 1087 aaKnown RBP19.1■□□□□ 0.65
DDB1-221ENST00000543162 EIF4G1Q04637 1599 aaKnown RBP19.1■□□□□ 0.65
DDB1-221ENST00000543162 WIZO95785 1651 aa18.98■□□□□ 0.63
DDB1-221ENST00000543162 PEG3Q9GZU2 1588 aa18.93■□□□□ 0.62
DDB1-221ENST00000543162 SMARCA2P51531 1590 aa18.92■□□□□ 0.62
DDB1-221ENST00000543162 ATAD2BQ9ULI0 1458 aa18.91■□□□□ 0.62
DDB1-221ENST00000543162 CC2D2AQ9P2K1 1620 aa18.89■□□□□ 0.62
DDB1-221ENST00000543162 NCAPD3P42695 1498 aa18.81■□□□□ 0.6
DDB1-221ENST00000543162 BAZ1BQ9UIG0 1483 aaKnown RBP18.8■□□□□ 0.6
DDB1-221ENST00000543162 TOP2AP11388 1531 aaKnown RBP18.79■□□□□ 0.6
DDB1-221ENST00000543162 HMGXB3Q12766 1538 aa18.76■□□□□ 0.59
DDB1-221ENST00000543162 DNAJC5BQ9UF47 199 aa18.66■□□□□ 0.58
DDB1-221ENST00000543162 CCDC88BA6NC98 1476 aa18.58■□□□□ 0.57
DDB1-221ENST00000543162 CADPSQ9ULU8 1353 aa18.3■□□□□ 0.52
DDB1-221ENST00000543162 CFTRP13569 1480 aa18.3■□□□□ 0.52
DDB1-221ENST00000543162 LAMC3Q9Y6N6 1575 aa18.23■□□□□ 0.51
DDB1-221ENST00000543162 NESP48681 1621 aa18.22■□□□□ 0.51
DDB1-221ENST00000543162 PRDM2Q13029 1718 aa18.2■□□□□ 0.5
DDB1-221ENST00000543162 CHIC1Q5VXU3 224 aa18.11■□□□□ 0.49
DDB1-221ENST00000543162 PDS5BQ9NTI5 1447 aa18.11■□□□□ 0.49
DDB1-221ENST00000543162 FANCD2Q9BXW9 1451 aa18.1■□□□□ 0.49
DDB1-221ENST00000543162 ABCC8Q09428 1581 aa18.08■□□□□ 0.48
DDB1-221ENST00000543162 CEP164Q9UPV0 1460 aa18.03■□□□□ 0.48
DDB1-221ENST00000543162 WRNQ14191 1432 aaPredicted RBP eCLIP18.03■□□□□ 0.48
DDB1-221ENST00000543162 TRIM41Q8WV44 630 aa18.01■□□□□ 0.47
DDB1-221ENST00000543162 KIF21AQ7Z4S6 1674 aa18.01■□□□□ 0.47
DDB1-221ENST00000543162 ERCC6Q03468 1493 aa17.96■□□□□ 0.47
DDB1-221ENST00000543162 SYNJ1O43426 1573 aa17.95■□□□□ 0.46
DDB1-221ENST00000543162 CUX1P39880 1505 aa17.93■□□□□ 0.46
DDB1-221ENST00000543162 TOP2BQ02880 1626 aa17.91■□□□□ 0.46
DDB1-221ENST00000543162 BIVM-ERCC5R4GMW8 1640 aa17.9■□□□□ 0.46
DDB1-221ENST00000543162 DNMBPQ6XZF7 1577 aa17.89■□□□□ 0.45
DDB1-221ENST00000543162 MRC2Q9UBG0 1479 aa17.88■□□□□ 0.45
DDB1-221ENST00000543162 URB2Q14146 1524 aaKnown RBP17.88■□□□□ 0.45
DDB1-221ENST00000543162 TOPBP1Q92547 1522 aa17.88■□□□□ 0.45
DDB1-221ENST00000543162 THOC2Q8NI27 1593 aaKnown RBP17.8■□□□□ 0.44
DDB1-221ENST00000543162 FGD5Q6ZNL6 1462 aa17.8■□□□□ 0.44
DDB1-221ENST00000543162 WDR62O43379 1518 aa17.79■□□□□ 0.44
DDB1-221ENST00000543162 POLA1P09884 1462 aaPredicted RBP17.75■□□□□ 0.43
DDB1-221ENST00000543162 SOGA1O94964 1423 aa17.71■□□□□ 0.43
DDB1-221ENST00000543162 RAD54L2Q9Y4B4 1467 aa17.68■□□□□ 0.42
DDB1-221ENST00000543162 CUX2O14529 1486 aa17.65■□□□□ 0.42
DDB1-221ENST00000543162 FAM9AQ8IZU1 332 aaPredicted RBP17.64■□□□□ 0.41
DDB1-221ENST00000543162 ABCA10Q8WWZ4 1543 aa17.63■□□□□ 0.41
DDB1-221ENST00000543162 EEA1Q15075 1411 aa17.63■□□□□ 0.41
DDB1-221ENST00000543162 IFT140Q96RY7 1462 aa17.63■□□□□ 0.41
DDB1-221ENST00000543162 TARBP1Q13395 1621 aaKnown RBP17.62■□□□□ 0.41
DDB1-221ENST00000543162 KIF27Q86VH2 1401 aa17.62■□□□□ 0.41
DDB1-221ENST00000543162 RUSC2Q8N2Y8 1516 aa17.62■□□□□ 0.41
DDB1-221ENST00000543162 WDR97A6NE52 1622 aa17.6■□□□□ 0.41
DDB1-221ENST00000543162 TDRD9Q8NDG6 1382 aaKnown RBP17.54■□□□□ 0.4
DDB1-221ENST00000543162 CSRNP3Q8WYN3 585 aa17.54■□□□□ 0.4
DDB1-221ENST00000543162 ABCA5Q8WWZ7 1642 aa17.52■□□□□ 0.4
DDB1-221ENST00000543162 GAPVD1Q14C86 1478 aa17.5■□□□□ 0.39
DDB1-221ENST00000543162 ZNF608Q9ULD9 1512 aaPredicted RBP17.5■□□□□ 0.39
DDB1-221ENST00000543162 AQRO60306 1485 aaKnown RBP eCLIP17.48■□□□□ 0.391e-6■■■□□ 15
DDB1-221ENST00000543162 IGF1RP08069 1367 aa17.47■□□□□ 0.39
DDB1-221ENST00000543162 EIF4G3O43432 1585 aaKnown RBP17.45■□□□□ 0.38
DDB1-221ENST00000543162 ERICH3Q5RHP9 1530 aa17.43■□□□□ 0.38
DDB1-221ENST00000543162 GRIN2BQ13224 1484 aa17.43■□□□□ 0.38
DDB1-221ENST00000543162 PBRM1Q86U86 1689 aa17.42■□□□□ 0.38
DDB1-221ENST00000543162 KIF21BO75037 1637 aa17.39■□□□□ 0.38
DDB1-221ENST00000543162 PRXQ9BXM0 1461 aa17.39■□□□□ 0.37
DDB1-221ENST00000543162 LOC105371045A0A1W2PR82 267 aa17.39■□□□□ 0.37
DDB1-221ENST00000543162 EHMT2Q96KQ7 1210 aa17.39■□□□□ 0.37
DDB1-221ENST00000543162 CARMIL1Q5VZK9 1371 aa17.39■□□□□ 0.37
DDB1-221ENST00000543162 CUL7Q14999 1698 aa17.39■□□□□ 0.37
DDB1-221ENST00000543162 GOLGA3Q08378 1498 aa17.36■□□□□ 0.37
DDB1-221ENST00000543162 SNAPC4Q5SXM2 1469 aa17.33■□□□□ 0.37
DDB1-221ENST00000543162 RAPGEF2Q9Y4G8 1499 aa17.33■□□□□ 0.37
DDB1-221ENST00000543162 FHAD1B1AJZ9 1412 aa17.32■□□□□ 0.36
DDB1-221ENST00000543162 ADAMTS12P58397 1594 aa17.32■□□□□ 0.36
DDB1-221ENST00000543162 MAGI1Q96QZ7 1491 aaPredicted RBP17.31■□□□□ 0.36
DDB1-221ENST00000543162 UBTFP17480 764 aaKnown RBP17.29■□□□□ 0.36
DDB1-221ENST00000543162 SYNJ2O15056 1496 aa17.24■□□□□ 0.35
DDB1-221ENST00000543162 TNIKQ9UKE5 1360 aa17.24■□□□□ 0.35
DDB1-221ENST00000543162 CHMP7Q8WUX9 453 aaPredicted RBP17.22■□□□□ 0.35
DDB1-221ENST00000543162 FBLN2P98095 1184 aa17.21■□□□□ 0.35
DDB1-221ENST00000543162 GRIN2AQ12879 1464 aa17.2■□□□□ 0.34
DDB1-221ENST00000543162 CTTNBP2Q8WZ74 1663 aa17.13■□□□□ 0.33
DDB1-221ENST00000543162 CHD1O14646 1710 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms