RNA–Protein interactions for RNA: ENST00000504951.6

GYPB-204, Transcript of glycophorin B (MNS blood group), humanhuman

TSL 1 (best)

Gene GYPB, Length 632 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GYPB-204ENST00000504951 AEBP2Q6ZN18 517 aaPredicted RBP18.43■□□□□ 0.54
GYPB-204ENST00000504951 CHIC1Q5VXU3 224 aa17.44■□□□□ 0.38
GYPB-204ENST00000504951 SENP3Q9H4L4 574 aaPredicted RBP15.9■□□□□ 0.14
GYPB-204ENST00000504951 NISCHQ9Y2I1 1504 aa15.59■□□□□ 0.09
GYPB-204ENST00000504951 PHF23Q9BUL5 403 aaPredicted RBP15.59■□□□□ 0.09
GYPB-204ENST00000504951 FOXD1Q16676 465 aa14.73□□□□□ -0.05
GYPB-204ENST00000504951 ABCC9O60706 1549 aa14.36□□□□□ -0.11
GYPB-204ENST00000504951 CCDC180Q9P1Z9 1646 aa14.13□□□□□ -0.15
GYPB-204ENST00000504951 MSH5O43196 834 aa13.98□□□□□ -0.17
GYPB-204ENST00000504951 PLPPR3Q6T4P5 718 aa13.92□□□□□ -0.18
GYPB-204ENST00000504951 DNAJC5BQ9UF47 199 aa13.88□□□□□ -0.19
GYPB-204ENST00000504951 POTEDQ86YR6 584 aa13.8□□□□□ -0.2
GYPB-204ENST00000504951 PIAS4Q8N2W9 510 aaPredicted RBP13.78□□□□□ -0.2
GYPB-204ENST00000504951 RB1CC1Q8TDY2 1594 aa13.62□□□□□ -0.23
GYPB-204ENST00000504951 PPP6R1Q9UPN7 881 aa13.59□□□□□ -0.23
GYPB-204ENST00000504951 ADRA2BP18089 450 aa13.56□□□□□ -0.24
GYPB-204ENST00000504951 NACADO15069 1562 aa13.49□□□□□ -0.25
GYPB-204ENST00000504951 PABPN1Q86U42 306 aaKnown RBP eCLIP13.32□□□□□ -0.28
GYPB-204ENST00000504951 MYO15BQ96JP2 1530 aa13.31□□□□□ -0.28
GYPB-204ENST00000504951 BICRAQ9NZM4 1560 aa13.23□□□□□ -0.29
GYPB-204ENST00000504951 UNC13AQ9UPW8 1703 aa13.2□□□□□ -0.3
GYPB-204ENST00000504951 SHROOM4Q9ULL8 1493 aa13.16□□□□□ -0.3
GYPB-204ENST00000504951 DCAF8L2P0C7V8 631 aa13.15□□□□□ -0.3
GYPB-204ENST00000504951 DNAJC5Q9H3Z4 198 aa13.1□□□□□ -0.31
GYPB-204ENST00000504951 CECR2Q9BXF3 1484 aa13.04□□□□□ -0.32
GYPB-204ENST00000504951 CC2D2AQ9P2K1 1620 aa13□□□□□ -0.33
GYPB-204ENST00000504951 DCAF1Q9Y4B6 1507 aa12.97□□□□□ -0.33
GYPB-204ENST00000504951 EIF4G1Q04637 1599 aaKnown RBP12.91□□□□□ -0.34
GYPB-204ENST00000504951 ZCCHC6Q5VYS8 1495 aaKnown RBP12.84□□□□□ -0.35
GYPB-204ENST00000504951 SCRIBQ14160 1630 aa12.72□□□□□ -0.37
GYPB-204ENST00000504951 CUX2O14529 1486 aa12.67□□□□□ -0.38
GYPB-204ENST00000504951 SCAF1Q9H7N4 1312 aaKnown RBP12.59□□□□□ -0.39
GYPB-204ENST00000504951 DMRT2Q9Y5R5 561 aa12.55□□□□□ -0.4
GYPB-204ENST00000504951 NCAPD3P42695 1498 aa12.51□□□□□ -0.41
GYPB-204ENST00000504951 MAPK8IP2Q13387 824 aaPredicted RBP12.47□□□□□ -0.41
GYPB-204ENST00000504951 ERCC6Q03468 1493 aa12.44□□□□□ -0.42
GYPB-204ENST00000504951 ATAD2BQ9ULI0 1458 aa12.34□□□□□ -0.43
GYPB-204ENST00000504951 HMGXB3Q12766 1538 aa12.32□□□□□ -0.44
GYPB-204ENST00000504951 SMARCA2P51531 1590 aa12.29□□□□□ -0.44
GYPB-204ENST00000504951 NESP48681 1621 aa12.24□□□□□ -0.45
GYPB-204ENST00000504951 THOC2Q8NI27 1593 aaKnown RBP12.22□□□□□ -0.45
GYPB-204ENST00000504951 LAMC3Q9Y6N6 1575 aa12.21□□□□□ -0.46
GYPB-204ENST00000504951 PEG3Q9GZU2 1588 aa12.18□□□□□ -0.46
GYPB-204ENST00000504951 PDS5BQ9NTI5 1447 aa12.18□□□□□ -0.46
GYPB-204ENST00000504951 SMARCA4P51532 1647 aa12.18□□□□□ -0.46
GYPB-204ENST00000504951 TRIM41Q8WV44 630 aa12.16□□□□□ -0.46
GYPB-204ENST00000504951 BAZ1BQ9UIG0 1483 aaKnown RBP12.15□□□□□ -0.46
GYPB-204ENST00000504951 PPP4R3CPQ6ZMV5 832 aa12.13□□□□□ -0.47
GYPB-204ENST00000504951 BAZ1AQ9NRL2 1556 aaPredicted RBP12.12□□□□□ -0.47
GYPB-204ENST00000504951 CADPSQ9ULU8 1353 aa12.07□□□□□ -0.48
GYPB-204ENST00000504951 KIF21AQ7Z4S6 1674 aa12.04□□□□□ -0.48
GYPB-204ENST00000504951 CACNB1Q02641 598 aaPredicted RBP12.04□□□□□ -0.48
GYPB-204ENST00000504951 OSCARQ8IYS5 282 aa12.04□□□□□ -0.48
GYPB-204ENST00000504951 MRC2Q9UBG0 1479 aa12.03□□□□□ -0.48
GYPB-204ENST00000504951 WDR62O43379 1518 aa12.03□□□□□ -0.48
GYPB-204ENST00000504951 DCAF8L1A6NGE4 600 aa12.03□□□□□ -0.48
GYPB-204ENST00000504951 HOXD11P31277 338 aaPredicted RBP12.03□□□□□ -0.48
GYPB-204ENST00000504951 CNKSR2Q8WXI2 1034 aa11.99□□□□□ -0.49
GYPB-204ENST00000504951 MROH2BQ7Z745 1585 aa11.94□□□□□ -0.5
GYPB-204ENST00000504951 RNF216Q9NWF9 866 aaPredicted RBP11.92□□□□□ -0.5
GYPB-204ENST00000504951 CEP164Q9UPV0 1460 aa11.89□□□□□ -0.51
GYPB-204ENST00000504951 CFTRP13569 1480 aa11.86□□□□□ -0.51
GYPB-204ENST00000504951 FANCD2Q9BXW9 1451 aa11.86□□□□□ -0.51
GYPB-204ENST00000504951 RNF39Q9H2S5 420 aa11.84□□□□□ -0.51
GYPB-204ENST00000504951 RIMBP3CA6NJZ7 1639 aa11.79□□□□□ -0.52
GYPB-204ENST00000504951 RIMBP3BA6NNM3 1639 aa11.79□□□□□ -0.52
GYPB-204ENST00000504951 RIMBP3Q9UFD9 1639 aa11.79□□□□□ -0.52
GYPB-204ENST00000504951 URB2Q14146 1524 aaKnown RBP11.77□□□□□ -0.52
GYPB-204ENST00000504951 ARHGEF11O15085 1522 aa11.76□□□□□ -0.53
GYPB-204ENST00000504951 WIZO95785 1651 aa11.73□□□□□ -0.53
GYPB-204ENST00000504951 IFT140Q96RY7 1462 aa11.72□□□□□ -0.53
GYPB-204ENST00000504951 C1QBPQ07021 282 aaKnown RBP11.72□□□□□ -0.53
GYPB-204ENST00000504951 NCBP3Q53F19 620 aaKnown RBP11.71□□□□□ -0.53
GYPB-204ENST00000504951 CYB5RLQ6IPT4 315 aa11.69□□□□□ -0.54
GYPB-204ENST00000504951 RSF1Q96T23 1441 aaPredicted RBP11.66□□□□□ -0.54
GYPB-204ENST00000504951 ABCC8Q09428 1581 aa11.66□□□□□ -0.54
GYPB-204ENST00000504951 ZNF608Q9ULD9 1512 aaPredicted RBP11.65□□□□□ -0.54
GYPB-204ENST00000504951 TOP2AP11388 1531 aaKnown RBP11.63□□□□□ -0.55
GYPB-204ENST00000504951 TRHP20396 242 aaPredicted RBP11.62□□□□□ -0.55
GYPB-204ENST00000504951 ARAP1Q96P48 1450 aa11.62□□□□□ -0.55
GYPB-204ENST00000504951 TOPBP1Q92547 1522 aa11.6□□□□□ -0.55
GYPB-204ENST00000504951 PRDM2Q13029 1718 aa11.59□□□□□ -0.55
GYPB-204ENST00000504951 EIF4G3O43432 1585 aaKnown RBP11.55□□□□□ -0.56
GYPB-204ENST00000504951 TARBP1Q13395 1621 aaKnown RBP11.53□□□□□ -0.56
GYPB-204ENST00000504951 AQRO60306 1485 aaKnown RBP eCLIP11.52□□□□□ -0.56
GYPB-204ENST00000504951 DNMBPQ6XZF7 1577 aa11.52□□□□□ -0.57
GYPB-204ENST00000504951 CCDC88BA6NC98 1476 aa11.51□□□□□ -0.57
GYPB-204ENST00000504951 CHD1O14646 1710 aa11.49□□□□□ -0.57
GYPB-204ENST00000504951 WDR97A6NE52 1622 aa11.48□□□□□ -0.57
GYPB-204ENST00000504951 CLASP1Q7Z460 1538 aa11.47□□□□□ -0.57
GYPB-204ENST00000504951 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.47□□□□□ -0.57
GYPB-204ENST00000504951 POLA1P09884 1462 aaPredicted RBP11.45□□□□□ -0.58
GYPB-204ENST00000504951 FBLN2P98095 1184 aa11.45□□□□□ -0.58
GYPB-204ENST00000504951 NPM3O75607 178 aaKnown RBP11.43□□□□□ -0.58
GYPB-204ENST00000504951 MAGI1Q96QZ7 1491 aaPredicted RBP11.42□□□□□ -0.58
GYPB-204ENST00000504951 SOGA1O94964 1423 aa11.42□□□□□ -0.58
GYPB-204ENST00000504951 CHMP7Q8WUX9 453 aaPredicted RBP11.41□□□□□ -0.58
GYPB-204ENST00000504951 SYNJ1O43426 1573 aa11.41□□□□□ -0.58
GYPB-204ENST00000504951 TDRD9Q8NDG6 1382 aaKnown RBP11.4□□□□□ -0.59
GYPB-204ENST00000504951 SYNJ2O15056 1496 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms