RNA–Protein interactions for RNA: ENST00000506516.5

GYPB-206, Transcript of glycophorin B (MNS blood group), humanhuman

TSL 1 (best)

Gene GYPB, Length 473 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GYPB-206ENST00000506516 AEBP2Q6ZN18 517 aaPredicted RBP19.56■□□□□ 0.72
GYPB-206ENST00000506516 CHIC1Q5VXU3 224 aa18.78■□□□□ 0.6
GYPB-206ENST00000506516 NISCHQ9Y2I1 1504 aa17.37■□□□□ 0.37
GYPB-206ENST00000506516 SENP3Q9H4L4 574 aaPredicted RBP16.68■□□□□ 0.26
GYPB-206ENST00000506516 PHF23Q9BUL5 403 aaPredicted RBP16.47■□□□□ 0.23
GYPB-206ENST00000506516 FOXD1Q16676 465 aa15.5■□□□□ 0.07
GYPB-206ENST00000506516 CCDC180Q9P1Z9 1646 aa15.37■□□□□ 0.05
GYPB-206ENST00000506516 PLPPR3Q6T4P5 718 aa15.31■□□□□ 0.04
GYPB-206ENST00000506516 ABCC9O60706 1549 aa15.08■□□□□ 0.01
GYPB-206ENST00000506516 DCAF8L2P0C7V8 631 aa14.65□□□□□ -0.06
GYPB-206ENST00000506516 PPP6R1Q9UPN7 881 aa14.62□□□□□ -0.07
GYPB-206ENST00000506516 ADRA2BP18089 450 aa14.58□□□□□ -0.08
GYPB-206ENST00000506516 PIAS4Q8N2W9 510 aaPredicted RBP14.53□□□□□ -0.08
GYPB-206ENST00000506516 RB1CC1Q8TDY2 1594 aa14.51□□□□□ -0.09
GYPB-206ENST00000506516 NACADO15069 1562 aa14.51□□□□□ -0.09
GYPB-206ENST00000506516 MSH5O43196 834 aa14.46□□□□□ -0.09
GYPB-206ENST00000506516 ZCCHC6Q5VYS8 1495 aaKnown RBP14.44□□□□□ -0.1
GYPB-206ENST00000506516 MYO15BQ96JP2 1530 aa14.43□□□□□ -0.1
GYPB-206ENST00000506516 DCAF1Q9Y4B6 1507 aa14.36□□□□□ -0.11
GYPB-206ENST00000506516 PABPN1Q86U42 306 aaKnown RBP eCLIP14.15□□□□□ -0.14
GYPB-206ENST00000506516 UNC13AQ9UPW8 1703 aa14.07□□□□□ -0.16
GYPB-206ENST00000506516 SCRIBQ14160 1630 aa14.04□□□□□ -0.16
GYPB-206ENST00000506516 BICRAQ9NZM4 1560 aa14.01□□□□□ -0.17
GYPB-206ENST00000506516 SHROOM4Q9ULL8 1493 aa13.92□□□□□ -0.18
GYPB-206ENST00000506516 DNAJC5BQ9UF47 199 aa13.85□□□□□ -0.19
GYPB-206ENST00000506516 POTEDQ86YR6 584 aa13.78□□□□□ -0.2
GYPB-206ENST00000506516 EIF4G1Q04637 1599 aaKnown RBP13.67□□□□□ -0.22
GYPB-206ENST00000506516 CC2D2AQ9P2K1 1620 aa13.61□□□□□ -0.23
GYPB-206ENST00000506516 CECR2Q9BXF3 1484 aa13.56□□□□□ -0.24
GYPB-206ENST00000506516 PPP4R3CPQ6ZMV5 832 aa13.52□□□□□ -0.25
GYPB-206ENST00000506516 KCNA4P22459 653 aa13.5□□□□□ -0.25
GYPB-206ENST00000506516 BAZ1AQ9NRL2 1556 aaPredicted RBP13.46□□□□□ -0.25
GYPB-206ENST00000506516 SMARCA4P51532 1647 aa13.43□□□□□ -0.26
GYPB-206ENST00000506516 NCAPD3P42695 1498 aa13.41□□□□□ -0.26
GYPB-206ENST00000506516 ATAD2BQ9ULI0 1458 aa13.41□□□□□ -0.26
GYPB-206ENST00000506516 SMARCA2P51531 1590 aa13.38□□□□□ -0.27
GYPB-206ENST00000506516 SCAF1Q9H7N4 1312 aaKnown RBP13.38□□□□□ -0.27
GYPB-206ENST00000506516 MROH2BQ7Z745 1585 aa13.37□□□□□ -0.27
GYPB-206ENST00000506516 MAPK8IP2Q13387 824 aaPredicted RBP13.33□□□□□ -0.28
GYPB-206ENST00000506516 PEG3Q9GZU2 1588 aa13.31□□□□□ -0.28
GYPB-206ENST00000506516 BAZ1BQ9UIG0 1483 aaKnown RBP13.3□□□□□ -0.28
GYPB-206ENST00000506516 HMGXB3Q12766 1538 aa13.29□□□□□ -0.28
GYPB-206ENST00000506516 RSF1Q96T23 1441 aaPredicted RBP13.26□□□□□ -0.29
GYPB-206ENST00000506516 DMRT2Q9Y5R5 561 aa13.26□□□□□ -0.29
GYPB-206ENST00000506516 NCBP3Q53F19 620 aaKnown RBP13.25□□□□□ -0.29
GYPB-206ENST00000506516 WIZO95785 1651 aa13.21□□□□□ -0.3
GYPB-206ENST00000506516 TOP2AP11388 1531 aaKnown RBP13.08□□□□□ -0.31
GYPB-206ENST00000506516 CNKSR2Q8WXI2 1034 aa13.08□□□□□ -0.32
GYPB-206ENST00000506516 NPM3O75607 178 aaKnown RBP13.05□□□□□ -0.32
GYPB-206ENST00000506516 CADPSQ9ULU8 1353 aa13.05□□□□□ -0.32
GYPB-206ENST00000506516 NESP48681 1621 aa13.03□□□□□ -0.32
GYPB-206ENST00000506516 SUPT5HO00267 1087 aaKnown RBP13.03□□□□□ -0.32
GYPB-206ENST00000506516 ERCC6Q03468 1493 aa13.03□□□□□ -0.32
GYPB-206ENST00000506516 LAMC3Q9Y6N6 1575 aa13.03□□□□□ -0.32
GYPB-206ENST00000506516 PDS5BQ9NTI5 1447 aa13□□□□□ -0.33
GYPB-206ENST00000506516 CCDC88BA6NC98 1476 aa12.97□□□□□ -0.33
GYPB-206ENST00000506516 CFTRP13569 1480 aa12.93□□□□□ -0.34
GYPB-206ENST00000506516 SLC4A1APQ9BWU0 796 aaKnown RBP12.91□□□□□ -0.34
GYPB-206ENST00000506516 FANCD2Q9BXW9 1451 aa12.86□□□□□ -0.35
GYPB-206ENST00000506516 EHMT2Q96KQ7 1210 aa12.86□□□□□ -0.35
GYPB-206ENST00000506516 CUX2O14529 1486 aa12.85□□□□□ -0.35
GYPB-206ENST00000506516 HOXD11P31277 338 aaPredicted RBP12.85□□□□□ -0.35
GYPB-206ENST00000506516 CEP164Q9UPV0 1460 aa12.84□□□□□ -0.35
GYPB-206ENST00000506516 KIF21AQ7Z4S6 1674 aa12.82□□□□□ -0.36
GYPB-206ENST00000506516 MRC2Q9UBG0 1479 aa12.8□□□□□ -0.36
GYPB-206ENST00000506516 RNF216Q9NWF9 866 aaPredicted RBP12.8□□□□□ -0.36
GYPB-206ENST00000506516 THOC2Q8NI27 1593 aaKnown RBP12.78□□□□□ -0.36
GYPB-206ENST00000506516 WDR62O43379 1518 aa12.73□□□□□ -0.37
GYPB-206ENST00000506516 PRDM2Q13029 1718 aa12.72□□□□□ -0.37
GYPB-206ENST00000506516 ABCC8Q09428 1581 aa12.7□□□□□ -0.38
GYPB-206ENST00000506516 URB2Q14146 1524 aaKnown RBP12.69□□□□□ -0.38
GYPB-206ENST00000506516 DCAF8L1A6NGE4 600 aa12.65□□□□□ -0.38
GYPB-206ENST00000506516 TOPBP1Q92547 1522 aa12.64□□□□□ -0.39
GYPB-206ENST00000506516 DNMBPQ6XZF7 1577 aa12.61□□□□□ -0.39
GYPB-206ENST00000506516 IFT140Q96RY7 1462 aa12.58□□□□□ -0.4
GYPB-206ENST00000506516 CSRNP3Q8WYN3 585 aa12.56□□□□□ -0.4
GYPB-206ENST00000506516 SOGA1O94964 1423 aa12.54□□□□□ -0.4
GYPB-206ENST00000506516 CUX1P39880 1505 aa12.53□□□□□ -0.4
GYPB-206ENST00000506516 POLA1P09884 1462 aaPredicted RBP12.53□□□□□ -0.4
GYPB-206ENST00000506516 WRNQ14191 1432 aaPredicted RBP eCLIP12.52□□□□□ -0.41
GYPB-206ENST00000506516 FGD5Q6ZNL6 1462 aa12.51□□□□□ -0.41
GYPB-206ENST00000506516 DNAJC5Q9H3Z4 198 aa12.5□□□□□ -0.41
GYPB-206ENST00000506516 RAD54L2Q9Y4B4 1467 aa12.49□□□□□ -0.41
GYPB-206ENST00000506516 ZNF608Q9ULD9 1512 aaPredicted RBP12.48□□□□□ -0.41
GYPB-206ENST00000506516 TDRD9Q8NDG6 1382 aaKnown RBP12.46□□□□□ -0.41
GYPB-206ENST00000506516 TARBP1Q13395 1621 aaKnown RBP12.46□□□□□ -0.41
GYPB-206ENST00000506516 AQRO60306 1485 aaKnown RBP eCLIP12.46□□□□□ -0.42
GYPB-206ENST00000506516 TOP2BQ02880 1626 aa12.43□□□□□ -0.42
GYPB-206ENST00000506516 ZBTB22O15209 634 aa12.42□□□□□ -0.42
GYPB-206ENST00000506516 OSCARQ8IYS5 282 aa12.42□□□□□ -0.42
GYPB-206ENST00000506516 SYNJ1O43426 1573 aa12.41□□□□□ -0.42
GYPB-206ENST00000506516 BIVM-ERCC5R4GMW8 1640 aa12.4□□□□□ -0.42
GYPB-206ENST00000506516 EIF4G3O43432 1585 aaKnown RBP12.4□□□□□ -0.42
GYPB-206ENST00000506516 ABCA10Q8WWZ4 1543 aa12.4□□□□□ -0.42
GYPB-206ENST00000506516 WDR97A6NE52 1622 aa12.39□□□□□ -0.43
GYPB-206ENST00000506516 FBLN2P98095 1184 aa12.38□□□□□ -0.43
GYPB-206ENST00000506516 GAPVD1Q14C86 1478 aa12.37□□□□□ -0.43
GYPB-206ENST00000506516 GRIN2BQ13224 1484 aa12.36□□□□□ -0.43
GYPB-206ENST00000506516 FOXD4L1Q9NU39 408 aa12.36□□□□□ -0.43
GYPB-206ENST00000506516 CHMP7Q8WUX9 453 aaPredicted RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms