Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 ABL1-202ENST00000372348 3824 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.812e-6■■■□□ 15.9
SUB1P53999 PPP1CC-205ENST00000550261 747 ntTSL 53.23□□□□□ -1.893e-7■■■□□ 15.9
SUB1P53999 DIAPH1-211ENST00000518047 4668 ntAPPRIS ALT2 TSL 5 BASIC8.95□□□□□ -0.983e-6■■■□□ 15.9
SUB1P53999 RPS4X-203ENST00000470671 610 ntTSL 32.96□□□□□ -1.944e-23■■■□□ 15.9
SUB1P53999 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.049e-9■■■□□ 15.9
SUB1P53999 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.129e-9■■■□□ 15.9
SUB1P53999 SFPQ-201ENST00000357214 3747 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.781e-13■■■□□ 15.9
SUB1P53999 SFPQ-202ENST00000460428 464 ntTSL 26.45□□□□□ -1.381e-13■■■□□ 15.9
SUB1P53999 SFPQ-206ENST00000470472 874 ntTSL 53.1□□□□□ -1.911e-13■■■□□ 15.9
SUB1P53999 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.115e-9■■■□□ 15.8
SUB1P53999 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC11.52□□□□□ -0.575e-9■■■□□ 15.8
SUB1P53999 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.585e-7■■■□□ 15.8
SUB1P53999 CTCFL-202ENST00000371196 3491 ntAPPRIS P3 TSL 1 (best) BASIC9.28□□□□□ -0.925e-7■■■□□ 15.8
SUB1P53999 CTCFL-207ENST00000429804 3864 ntTSL 1 (best) BASIC8.83□□□□□ -15e-7■■■□□ 15.8
SUB1P53999 CTCFL-201ENST00000243914 3567 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.015e-7■■■□□ 15.8
SUB1P53999 CTCFL-216ENST00000608263 4040 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.025e-7■■■□□ 15.8
SUB1P53999 CTCFL-222ENST00000609232 3668 ntAPPRIS P3 TSL 1 (best) BASIC7.83□□□□□ -1.165e-7■■■□□ 15.8
SUB1P53999 GNB2-212ENST00000470354 902 ntTSL 515.02■□□□□ -02e-8■■■□□ 15.8
SUB1P53999 SUPT5H-210ENST00000598117 859 ntTSL 214.54□□□□□ -0.082e-8■■■□□ 15.8
SUB1P53999 SUPT5H-216ENST00000599335 3796 ntTSL 28.92□□□□□ -0.982e-8■■■□□ 15.8
SUB1P53999 CCT6A-205ENST00000466572 686 ntTSL 28.66□□□□□ -1.022e-8■■■□□ 15.8
SUB1P53999 HK1-201ENST00000298649 3596 ntTSL 5 BASIC8.74□□□□□ -1.015e-11■■■□□ 15.8
SUB1P53999 HK1-206ENST00000448642 3868 ntTSL 5 BASIC8.15□□□□□ -1.15e-11■■■□□ 15.8
SUB1P53999 HK1-203ENST00000360289 3961 ntTSL 5 BASIC7.01□□□□□ -1.295e-11■■■□□ 15.8
SUB1P53999 PRMT1-211ENST00000528623 543 ntTSL 39.46□□□□□ -0.93e-6■■■□□ 15.8
SUB1P53999 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.525e-7■■■□□ 15.8
SUB1P53999 BUD23-206ENST00000430270 1260 ntTSL 514.59□□□□□ -0.074e-17■■■□□ 15.8
SUB1P53999 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.124e-17■■■□□ 15.8
SUB1P53999 BUD23-213ENST00000463307 1815 ntTSL 1 (best)11.91□□□□□ -0.54e-17■■■□□ 15.8
SUB1P53999 BUD23-209ENST00000436944 2496 ntTSL 211.6□□□□□ -0.554e-17■■■□□ 15.8
SUB1P53999 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC10.32□□□□□ -0.764e-17■■■□□ 15.8
SUB1P53999 BUD23-207ENST00000430446 738 ntTSL 39.68□□□□□ -0.864e-17■■■□□ 15.8
SUB1P53999 BUD23-212ENST00000453316 452 ntTSL 38.96□□□□□ -0.984e-17■■■□□ 15.8
SUB1P53999 BUD23-211ENST00000442099 691 ntTSL 38.79□□□□□ -14e-17■■■□□ 15.8
SUB1P53999 BUD23-215ENST00000471215 3886 ntTSL 28.11□□□□□ -1.114e-17■■■□□ 15.8
SUB1P53999 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC16.23■□□□□ 0.198e-8■■■□□ 15.8
SUB1P53999 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.188e-8■■■□□ 15.8
SUB1P53999 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC14.56□□□□□ -0.088e-8■■■□□ 15.8
SUB1P53999 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.178e-8■■■□□ 15.8
SUB1P53999 TPD52L1-216ENST00000571678 2486 nt9.97□□□□□ -0.818e-8■■■□□ 15.8
SUB1P53999 TPD52L1-204ENST00000392482 1165 ntTSL 2 BASIC8.21□□□□□ -1.18e-8■■■□□ 15.8
SUB1P53999 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.862e-8■■■□□ 15.8
SUB1P53999 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.478e-8■■■□□ 15.8
SUB1P53999 EMC4-204ENST00000557941 1201 ntTSL 212.22□□□□□ -0.454e-8■■■□□ 15.8
SUB1P53999 EMC4-210ENST00000560911 579 ntTSL 211.41□□□□□ -0.584e-8■■■□□ 15.8
SUB1P53999 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC10.56□□□□□ -0.724e-8■■■□□ 15.8
SUB1P53999 EMC4-213ENST00000561372 466 ntTSL 310.1□□□□□ -0.794e-8■■■□□ 15.8
SUB1P53999 EMC4-208ENST00000559078 599 ntTSL 3 BASIC9□□□□□ -0.974e-8■■■□□ 15.8
SUB1P53999 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.362e-8■■■□□ 15.7
SUB1P53999 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC14.57□□□□□ -0.082e-7■■■□□ 15.7
SUB1P53999 SMARCA4-219ENST00000592604 2940 ntTSL 1 (best)11.98□□□□□ -0.492e-7■■■□□ 15.7
SUB1P53999 RPL4-211ENST00000566491 593 ntTSL 29.8□□□□□ -0.842e-22■■■□□ 15.7
SUB1P53999 TMEM50A-203ENST00000480937 1102 ntTSL 213.28□□□□□ -0.282e-8■■■□□ 15.7
SUB1P53999 TMEM50A-206ENST00000498135 776 ntTSL 313.28□□□□□ -0.282e-8■■■□□ 15.7
SUB1P53999 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.412e-8■■■□□ 15.7
SUB1P53999 TMEM50A-205ENST00000491936 965 ntTSL 1 (best)12.18□□□□□ -0.462e-8■■■□□ 15.7
SUB1P53999 AP2S1-206ENST00000598027 355 ntTSL 24.95□□□□□ -1.622e-8■■■□□ 15.7
SUB1P53999 PLRG1-205ENST00000504341 723 ntTSL 34.64□□□□□ -1.672e-8■■■□□ 15.7
SUB1P53999 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC3.38□□□□□ -1.872e-8■■■□□ 15.7
SUB1P53999 COPA-207ENST00000545284 879 ntTSL 25.02□□□□□ -1.612e-7■■■□□ 15.7
SUB1P53999 KPNB1-211ENST00000582097 2347 ntTSL 26.73□□□□□ -1.332e-10■■■□□ 15.7
SUB1P53999 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.691e-8■■■□□ 15.7
SUB1P53999 CS-204ENST00000546621 1513 ntTSL 26.16□□□□□ -1.421e-6■■■□□ 15.7
SUB1P53999 SLC25A3-213ENST00000550695 756 ntTSL 310.61□□□□□ -0.711e-6■■■□□ 15.6
SUB1P53999 SLC25A3-209ENST00000548046 550 ntTSL 410.5□□□□□ -0.731e-6■■■□□ 15.6
SUB1P53999 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC10.25□□□□□ -0.771e-6■■■□□ 15.6
SUB1P53999 HNRNPU-217ENST00000638952 5678 ntTSL 515.66■□□□□ 0.18e-9■■■□□ 15.6
SUB1P53999 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.028e-9■■■□□ 15.6
SUB1P53999 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.278e-9■■■□□ 15.6
SUB1P53999 HNRNPU-228ENST00000640306 2917 ntTSL 513.28□□□□□ -0.288e-9■■■□□ 15.6
SUB1P53999 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC12.54□□□□□ -0.48e-9■■■□□ 15.6
SUB1P53999 HNRNPU-212ENST00000638230 1922 ntTSL 59.95□□□□□ -0.828e-9■■■□□ 15.6
SUB1P53999 HNRNPU-227ENST00000640264 328 ntTSL 38.27□□□□□ -1.098e-9■■■□□ 15.6
SUB1P53999 HNRNPU-216ENST00000638716 2640 ntTSL 5 BASIC7.69□□□□□ -1.188e-9■■■□□ 15.6
SUB1P53999 HNRNPU-219ENST00000639628 4546 ntTSL 1 (best) BASIC7.44□□□□□ -1.228e-9■■■□□ 15.6
SUB1P53999 HNRNPU-208ENST00000475997 5290 ntTSL 55.59□□□□□ -1.518e-9■■■□□ 15.6
SUB1P53999 HNRNPU-203ENST00000366527 12852 ntTSL 23.72□□□□□ -1.818e-9■■■□□ 15.6
SUB1P53999 HNRNPU-211ENST00000489705 451 ntTSL 32.4□□□□□ -2.038e-9■■■□□ 15.6
SUB1P53999 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.171e-6■■■□□ 15.6
SUB1P53999 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.441e-6■■■□□ 15.6
SUB1P53999 PITPNB-201ENST00000320996 2826 ntAPPRIS ALT1 TSL 1 (best) BASIC10.29□□□□□ -0.761e-6■■■□□ 15.6
SUB1P53999 LRRC75A-AS1-201ENST00000460249 773 ntTSL 37.02□□□□□ -1.294e-29■■■□□ 15.6
SUB1P53999 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.496e-7■■■□□ 15.6
SUB1P53999 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.616e-7■■■□□ 15.6
SUB1P53999 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.626e-7■■■□□ 15.6
SUB1P53999 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC9.95□□□□□ -0.826e-7■■■□□ 15.6
SUB1P53999 IMPDH2-206ENST00000466147 691 ntTSL 213.3□□□□□ -0.289e-13■■■□□ 15.6
SUB1P53999 IMPDH2-207ENST00000472328 469 ntTSL 313.3□□□□□ -0.289e-13■■■□□ 15.6
SUB1P53999 IMPDH2-208ENST00000481274 840 ntTSL 211.58□□□□□ -0.569e-13■■■□□ 15.6
SUB1P53999 IMPDH2-205ENST00000463903 420 ntTSL 29.77□□□□□ -0.859e-13■■■□□ 15.6
SUB1P53999 IMPDH2-209ENST00000484872 643 ntTSL 23.94□□□□□ -1.789e-13■■■□□ 15.6
SUB1P53999 BAG6-247ENST00000439687 3104 ntTSL 2 BASIC9.77□□□□□ -0.854e-7■■■□□ 15.6
SUB1P53999 BAG6-235ENST00000362049 3626 ntTSL 2 BASIC9.75□□□□□ -0.854e-7■■■□□ 15.6
SUB1P53999 BAG6-236ENST00000375964 3815 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.924e-7■■■□□ 15.6
SUB1P53999 BAG6-234ENST00000211379 3779 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.944e-7■■■□□ 15.6
SUB1P53999 EIF4A1-222ENST00000582050 576 ntTSL 514.08□□□□□ -0.163e-6■■■□□ 15.6
SUB1P53999 HSPA8-219ENST00000532780 1194 ntTSL 213.94□□□□□ -0.188e-14■■■□□ 15.6
SUB1P53999 HSPA8-206ENST00000525624 1048 ntTSL 510.31□□□□□ -0.768e-14■■■□□ 15.6
SUB1P53999 HSPA8-210ENST00000527387 579 ntTSL 49.67□□□□□ -0.868e-14■■■□□ 15.6
SUB1P53999 HSPA8-216ENST00000532167 570 ntTSL 43.02□□□□□ -1.938e-14■■■□□ 15.6
Retrieved 100 of 11,644 protein–RNA pairs in 141.4 ms