RNA–Protein interactions for RNA: ENST00000545284.1

COPA-207, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 879 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-207ENST00000545284 NISCHQ9Y2I1 1504 aa18.79■□□□□ 0.6
COPA-207ENST00000545284 ABCC9O60706 1549 aa17.43■□□□□ 0.38
COPA-207ENST00000545284 CCDC180Q9P1Z9 1646 aa17■□□□□ 0.31
COPA-207ENST00000545284 DNAJC5BQ9UF47 199 aa16.8■□□□□ 0.28
COPA-207ENST00000545284 RB1CC1Q8TDY2 1594 aa16.46■□□□□ 0.23
COPA-207ENST00000545284 NACADO15069 1562 aa16.28■□□□□ 0.2
COPA-207ENST00000545284 PABPN1Q86U42 306 aaKnown RBP eCLIP16.19■□□□□ 0.189e-7■□□□□ 11
COPA-207ENST00000545284 DCAF8L2P0C7V8 631 aa16.04■□□□□ 0.16
COPA-207ENST00000545284 MYO15BQ96JP2 1530 aa15.99■□□□□ 0.15
COPA-207ENST00000545284 BICRAQ9NZM4 1560 aa15.92■□□□□ 0.14
COPA-207ENST00000545284 DNAJC5Q9H3Z4 198 aa15.89■□□□□ 0.13
COPA-207ENST00000545284 SHROOM4Q9ULL8 1493 aa15.86■□□□□ 0.13
COPA-207ENST00000545284 UNC13AQ9UPW8 1703 aa15.86■□□□□ 0.13
COPA-207ENST00000545284 CECR2Q9BXF3 1484 aa15.82■□□□□ 0.12
COPA-207ENST00000545284 CC2D2AQ9P2K1 1620 aa15.72■□□□□ 0.11
COPA-207ENST00000545284 EIF4G1Q04637 1599 aaKnown RBP15.61■□□□□ 0.09
COPA-207ENST00000545284 DCAF1Q9Y4B6 1507 aa15.58■□□□□ 0.08
COPA-207ENST00000545284 ZCCHC6Q5VYS8 1495 aaKnown RBP15.46■□□□□ 0.06
COPA-207ENST00000545284 SCRIBQ14160 1630 aa15.4■□□□□ 0.06
COPA-207ENST00000545284 CUX2O14529 1486 aa15.33■□□□□ 0.05
COPA-207ENST00000545284 ERCC6Q03468 1493 aa15.14■□□□□ 0.01
COPA-207ENST00000545284 NCAPD3P42695 1498 aa15.08■□□□□ 0
COPA-207ENST00000545284 ATAD2BQ9ULI0 1458 aa14.9□□□□□ -0.02
COPA-207ENST00000545284 TRIM41Q8WV44 630 aa14.87□□□□□ -0.03
COPA-207ENST00000545284 HMGXB3Q12766 1538 aa14.87□□□□□ -0.03
COPA-207ENST00000545284 SMARCA2P51531 1590 aa14.84□□□□□ -0.03
COPA-207ENST00000545284 NESP48681 1621 aa14.81□□□□□ -0.04
COPA-207ENST00000545284 THOC2Q8NI27 1593 aaKnown RBP14.76□□□□□ -0.05
COPA-207ENST00000545284 PDS5BQ9NTI5 1447 aa14.75□□□□□ -0.05
COPA-207ENST00000545284 LAMC3Q9Y6N6 1575 aa14.74□□□□□ -0.05
COPA-207ENST00000545284 BAZ1BQ9UIG0 1483 aaKnown RBP14.71□□□□□ -0.05
COPA-207ENST00000545284 SMARCA4P51532 1647 aa14.69□□□□□ -0.06
COPA-207ENST00000545284 PEG3Q9GZU2 1588 aa14.64□□□□□ -0.07
COPA-207ENST00000545284 BAZ1AQ9NRL2 1556 aaPredicted RBP14.63□□□□□ -0.07
COPA-207ENST00000545284 OSCARQ8IYS5 282 aa14.61□□□□□ -0.07
COPA-207ENST00000545284 CADPSQ9ULU8 1353 aa14.6□□□□□ -0.07
COPA-207ENST00000545284 MRC2Q9UBG0 1479 aa14.57□□□□□ -0.08
COPA-207ENST00000545284 KIF21AQ7Z4S6 1674 aa14.53□□□□□ -0.08
COPA-207ENST00000545284 WDR62O43379 1518 aa14.53□□□□□ -0.08
COPA-207ENST00000545284 CEP164Q9UPV0 1460 aa14.41□□□□□ -0.1
COPA-207ENST00000545284 MROH2BQ7Z745 1585 aa14.41□□□□□ -0.1
COPA-207ENST00000545284 FANCD2Q9BXW9 1451 aa14.36□□□□□ -0.11
COPA-207ENST00000545284 CFTRP13569 1480 aa14.31□□□□□ -0.12
COPA-207ENST00000545284 RIMBP3CA6NJZ7 1639 aa14.27□□□□□ -0.12
COPA-207ENST00000545284 RIMBP3BA6NNM3 1639 aa14.27□□□□□ -0.12
COPA-207ENST00000545284 RIMBP3Q9UFD9 1639 aa14.27□□□□□ -0.12
COPA-207ENST00000545284 ARHGEF11O15085 1522 aa14.25□□□□□ -0.13
COPA-207ENST00000545284 URB2Q14146 1524 aaKnown RBP14.22□□□□□ -0.13
COPA-207ENST00000545284 CYB5RLQ6IPT4 315 aa14.22□□□□□ -0.13
COPA-207ENST00000545284 TRHP20396 242 aaPredicted RBP14.2□□□□□ -0.14
COPA-207ENST00000545284 IFT140Q96RY7 1462 aa14.18□□□□□ -0.14
COPA-207ENST00000545284 AEBP2Q6ZN18 517 aaPredicted RBP14.16□□□□□ -0.14
COPA-207ENST00000545284 WIZO95785 1651 aa14.14□□□□□ -0.15
COPA-207ENST00000545284 RSF1Q96T23 1441 aaPredicted RBP14.11□□□□□ -0.15
COPA-207ENST00000545284 ZNF608Q9ULD9 1512 aaPredicted RBP14.1□□□□□ -0.15
COPA-207ENST00000545284 ABCC8Q09428 1581 aa14.07□□□□□ -0.16
COPA-207ENST00000545284 ARAP1Q96P48 1450 aa14.06□□□□□ -0.16
COPA-207ENST00000545284 TOP2AP11388 1531 aaKnown RBP14.03□□□□□ -0.16
COPA-207ENST00000545284 TOPBP1Q92547 1522 aa14□□□□□ -0.17
COPA-207ENST00000545284 FBLN2P98095 1184 aa13.98□□□□□ -0.17
COPA-207ENST00000545284 EIF4G3O43432 1585 aaKnown RBP13.96□□□□□ -0.17
COPA-207ENST00000545284 AQRO60306 1485 aaKnown RBP eCLIP13.96□□□□□ -0.179e-10■■■■□ 21.3
COPA-207ENST00000545284 PRDM2Q13029 1718 aa13.91□□□□□ -0.18
COPA-207ENST00000545284 DNMBPQ6XZF7 1577 aa13.91□□□□□ -0.18
COPA-207ENST00000545284 CCDC88BA6NC98 1476 aa13.89□□□□□ -0.19
COPA-207ENST00000545284 TARBP1Q13395 1621 aaKnown RBP13.88□□□□□ -0.19
COPA-207ENST00000545284 CHD1O14646 1710 aa13.87□□□□□ -0.19
COPA-207ENST00000545284 CHMP7Q8WUX9 453 aaPredicted RBP13.87□□□□□ -0.19
COPA-207ENST00000545284 POLA1P09884 1462 aaPredicted RBP13.85□□□□□ -0.19
COPA-207ENST00000545284 CLASP1Q7Z460 1538 aa13.84□□□□□ -0.19
COPA-207ENST00000545284 WDR97A6NE52 1622 aa13.82□□□□□ -0.2
COPA-207ENST00000545284 TDRD9Q8NDG6 1382 aaKnown RBP13.82□□□□□ -0.2
COPA-207ENST00000545284 SOGA1O94964 1423 aa13.81□□□□□ -0.2
COPA-207ENST00000545284 SYNJ1O43426 1573 aa13.81□□□□□ -0.2
COPA-207ENST00000545284 MAGI1Q96QZ7 1491 aaPredicted RBP13.8□□□□□ -0.2
COPA-207ENST00000545284 SNAPC4Q5SXM2 1469 aa13.78□□□□□ -0.2
COPA-207ENST00000545284 GAPVD1Q14C86 1478 aa13.76□□□□□ -0.21
COPA-207ENST00000545284 RAD54L2Q9Y4B4 1467 aa13.76□□□□□ -0.21
COPA-207ENST00000545284 SYNJ2O15056 1496 aa13.75□□□□□ -0.21
COPA-207ENST00000545284 GRIN2BQ13224 1484 aa13.75□□□□□ -0.21
COPA-207ENST00000545284 FGD5Q6ZNL6 1462 aa13.67□□□□□ -0.22
COPA-207ENST00000545284 CUX1P39880 1505 aa13.57□□□□□ -0.24
COPA-207ENST00000545284 ILDR1Q86SU0 546 aaPredicted RBP13.56□□□□□ -0.24
COPA-207ENST00000545284 NUP160Q12769 1436 aa13.56□□□□□ -0.24
COPA-207ENST00000545284 GRIN2AQ12879 1464 aa13.55□□□□□ -0.24
COPA-207ENST00000545284 ABCA10Q8WWZ4 1543 aa13.54□□□□□ -0.24
COPA-207ENST00000545284 CEP170Q5SW79 1584 aa13.52□□□□□ -0.25
COPA-207ENST00000545284 KDM4FA0A1W2PPD8 638 aa13.51□□□□□ -0.25
COPA-207ENST00000545284 ERCC6L2Q5T890 1561 aa13.5□□□□□ -0.25
COPA-207ENST00000545284 NPM1P06748 294 aaKnown RBP eCLIP13.5□□□□□ -0.25
COPA-207ENST00000545284 FAM69CQ0P6D2 419 aa13.5□□□□□ -0.25
COPA-207ENST00000545284 ABCC10Q5T3U5 1492 aa13.49□□□□□ -0.25
COPA-207ENST00000545284 PBRM1Q86U86 1689 aa13.48□□□□□ -0.25
COPA-207ENST00000545284 ABCA5Q8WWZ7 1642 aa13.47□□□□□ -0.25
COPA-207ENST00000545284 FHAD1B1AJZ9 1412 aa13.47□□□□□ -0.25
COPA-207ENST00000545284 SHROOM2Q13796 1616 aa13.46□□□□□ -0.25
COPA-207ENST00000545284 JPH4Q96JJ6 628 aa13.46□□□□□ -0.25
COPA-207ENST00000545284 WRNQ14191 1432 aaPredicted RBP eCLIP13.45□□□□□ -0.26
COPA-207ENST00000545284 PRG4Q92954 1404 aaPredicted RBP13.44□□□□□ -0.26
COPA-207ENST00000545284 KIF13AQ9H1H9 1805 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms