Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 MTG1-206ENST00000492266 413 ntTSL 29.62□□□□□ -0.878e-14■■□□□ 12.8
SMNDC1O75940 HNRNPH1-236ENST00000519958 885 ntTSL 510.86□□□□□ -0.677e-15■■□□□ 12.8
SMNDC1O75940 CPNE7-203ENST00000525982 576 ntTSL 519■□□□□ 0.633e-7■■□□□ 12.8
SMNDC1O75940 AC245014.3-201ENST00000618589 347 ntBASIC5.46□□□□□ -1.543e-11■■□□□ 12.8
SMNDC1O75940 RNVU1-14-201ENST00000384770 164 ntBASIC3.14□□□□□ -1.913e-11■■□□□ 12.8
SMNDC1O75940 SCRIB-207ENST00000531942 421 ntTSL 219.75■□□□□ 0.754e-6■■□□□ 12.8
SMNDC1O75940 ASPSCR1-215ENST00000583142 532 ntTSL 39.68□□□□□ -0.862e-7■■□□□ 12.7
SMNDC1O75940 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.462e-6■■□□□ 12.7
SMNDC1O75940 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.312e-6■■□□□ 12.7
SMNDC1O75940 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.092e-6■■□□□ 12.7
SMNDC1O75940 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.41■□□□□ 0.862e-6■■□□□ 12.7
SMNDC1O75940 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.6■□□□□ 0.732e-14■■□□□ 12.7
SMNDC1O75940 JTB-206ENST00000471173 754 ntTSL 319.51■□□□□ 0.712e-14■■□□□ 12.7
SMNDC1O75940 AUH-205ENST00000478465 751 ntTSL 318.76■□□□□ 0.592e-6■■□□□ 12.7
SMNDC1O75940 C21orf2-204ENST00000462742 4532 ntTSL 218.53■□□□□ 0.562e-6■■□□□ 12.7
SMNDC1O75940 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.522e-6■■□□□ 12.7
SMNDC1O75940 WDR45B-203ENST00000571817 889 ntTSL 318.29■□□□□ 0.522e-6■■□□□ 12.7
SMNDC1O75940 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.462e-6■■□□□ 12.7
SMNDC1O75940 CNOT3-208ENST00000613073 2778 ntTSL 217.57■□□□□ 0.42e-6■■□□□ 12.7
SMNDC1O75940 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.52■□□□□ 0.42e-6■■□□□ 12.7
SMNDC1O75940 CNOT3-209ENST00000617930 2047 ntTSL 217.52■□□□□ 0.392e-6■■□□□ 12.7
SMNDC1O75940 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.12■□□□□ 0.332e-6■■□□□ 12.7
SMNDC1O75940 BLVRB-203ENST00000597870 1392 ntTSL 516.64■□□□□ 0.259e-7■■□□□ 12.7
SMNDC1O75940 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.212e-6■■□□□ 12.7
SMNDC1O75940 C21orf2-207ENST00000496321 1191 ntTSL 1 (best)16.11■□□□□ 0.172e-6■■□□□ 12.7
SMNDC1O75940 C21orf2-206ENST00000478674 485 ntTSL 315.96■□□□□ 0.152e-6■■□□□ 12.7
SMNDC1O75940 AP3D1-211ENST00000591650 1437 ntTSL 1 (best)15.3■□□□□ 0.042e-6■■□□□ 12.7
SMNDC1O75940 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.012e-6■■□□□ 12.7
SMNDC1O75940 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.112e-14■■□□□ 12.7
SMNDC1O75940 CNOT3-210ENST00000618939 4516 ntTSL 514.02□□□□□ -0.172e-6■■□□□ 12.7
SMNDC1O75940 JTB-205ENST00000461365 542 ntTSL 514.01□□□□□ -0.172e-14■■□□□ 12.7
SMNDC1O75940 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.229e-7■■□□□ 12.7
SMNDC1O75940 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.222e-6■■□□□ 12.7
SMNDC1O75940 CNOT3-206ENST00000471126 541 ntTSL 313.52□□□□□ -0.252e-6■■□□□ 12.7
SMNDC1O75940 WDR45B-205ENST00000572583 2322 ntTSL 1 (best)13.39□□□□□ -0.272e-6■■□□□ 12.7
SMNDC1O75940 AP3D1-203ENST00000585652 4433 ntTSL 213.16□□□□□ -0.32e-6■■□□□ 12.7
SMNDC1O75940 FOXK1-201ENST00000328914 11181 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.322e-6■■□□□ 12.7
SMNDC1O75940 WDR45B-206ENST00000573616 896 ntTSL 512.82□□□□□ -0.362e-6■■□□□ 12.7
SMNDC1O75940 JTB-202ENST00000356648 1040 ntTSL 2 BASIC12.67□□□□□ -0.382e-14■■□□□ 12.7
SMNDC1O75940 CNOT3-202ENST00000358389 4118 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.412e-6■■□□□ 12.7
SMNDC1O75940 AP3D1-206ENST00000589223 3357 ntTSL 212.41□□□□□ -0.422e-6■■□□□ 12.7
SMNDC1O75940 DENND4B-212ENST00000494683 456 ntTSL 312.37□□□□□ -0.432e-6■■□□□ 12.7
SMNDC1O75940 SREBF1-223ENST00000584760 564 ntTSL 211.9□□□□□ -0.52e-6■■□□□ 12.7
SMNDC1O75940 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC11.68□□□□□ -0.549e-7■■□□□ 12.7
SMNDC1O75940 WDR45B-202ENST00000571767 789 ntTSL 211.31□□□□□ -0.62e-6■■□□□ 12.7
SMNDC1O75940 TEX10-201ENST00000374902 3074 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.752e-6■■□□□ 12.7
SMNDC1O75940 GTPBP4-205ENST00000491635 2220 ntTSL 210.02□□□□□ -0.812e-6■■□□□ 12.7
SMNDC1O75940 TEX10-204ENST00000535814 3006 ntTSL 2 BASIC9.96□□□□□ -0.822e-6■■□□□ 12.7
SMNDC1O75940 CHD2-207ENST00000626782 2131 ntTSL 2 BASIC9.73□□□□□ -0.852e-6■■□□□ 12.7
SMNDC1O75940 CHD2-217ENST00000629136 480 ntTSL 59.66□□□□□ -0.862e-6■■□□□ 12.7
SMNDC1O75940 JTB-204ENST00000428469 520 ntTSL 38.96□□□□□ -0.982e-14■■□□□ 12.7
SMNDC1O75940 CHD2-206ENST00000625990 888 ntTSL 58.01□□□□□ -1.132e-6■■□□□ 12.7
SMNDC1O75940 AC013394.1-202ENST00000630790 4499 ntTSL 27.91□□□□□ -1.142e-6■■□□□ 12.7
SMNDC1O75940 TEX10-203ENST00000477648 4457 ntTSL 27.87□□□□□ -1.152e-6■■□□□ 12.7
SMNDC1O75940 WDR45B-204ENST00000571835 869 ntTSL 57.85□□□□□ -1.152e-6■■□□□ 12.7
SMNDC1O75940 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.22e-6■■□□□ 12.7
SMNDC1O75940 ENO1-205ENST00000492343 826 ntTSL 1 (best)7.36□□□□□ -1.232e-6■■□□□ 12.7
SMNDC1O75940 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC7.26□□□□□ -1.252e-6■■□□□ 12.7
SMNDC1O75940 STK4-203ENST00000474717 722 ntTSL 37.15□□□□□ -1.262e-6■■□□□ 12.7
SMNDC1O75940 CHD2-221ENST00000635856 4236 ntTSL 56.84□□□□□ -1.312e-6■■□□□ 12.7
SMNDC1O75940 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.76□□□□□ -1.332e-6■■□□□ 12.7
SMNDC1O75940 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.64□□□□□ -1.352e-6■■□□□ 12.7
SMNDC1O75940 WDR45B-207ENST00000573656 654 ntTSL 26.53□□□□□ -1.362e-6■■□□□ 12.7
SMNDC1O75940 ENO1-203ENST00000486051 536 ntTSL 36.29□□□□□ -1.42e-6■■□□□ 12.7
SMNDC1O75940 CHD2-227ENST00000637572 4452 ntTSL 55.21□□□□□ -1.572e-6■■□□□ 12.7
SMNDC1O75940 CHD2-225ENST00000636861 146 ntTSL 54.48□□□□□ -1.692e-6■■□□□ 12.7
SMNDC1O75940 DKC1-210ENST00000481062 819 ntTSL 211.91□□□□□ -0.52e-46■■□□□ 12.7
SMNDC1O75940 DKC1-209ENST00000475966 902 ntTSL 59.15□□□□□ -0.942e-46■■□□□ 12.7
SMNDC1O75940 DKC1-204ENST00000426673 843 ntTSL 58.66□□□□□ -1.022e-46■■□□□ 12.7
SMNDC1O75940 DKC1-202ENST00000412124 670 ntTSL 56.47□□□□□ -1.372e-46■■□□□ 12.7
SMNDC1O75940 SNORA56-201ENST00000383966 129 ntBASIC4.32□□□□□ -1.722e-46■■□□□ 12.7
SMNDC1O75940 NOP56-213ENST00000480992 929 ntTSL 510.86□□□□□ -0.671e-19■■□□□ 12.7
SMNDC1O75940 NOP56-214ENST00000484998 998 ntTSL 57.29□□□□□ -1.241e-19■■□□□ 12.7
SMNDC1O75940 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.233e-7■■□□□ 12.7
SMNDC1O75940 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.933e-7■■□□□ 12.7
SMNDC1O75940 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.83■□□□□ 0.933e-7■■□□□ 12.7
SMNDC1O75940 BCAR1-216ENST00000564170 552 ntTSL 419.09■□□□□ 0.653e-7■■□□□ 12.7
SMNDC1O75940 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.623e-7■■□□□ 12.7
SMNDC1O75940 TSPAN4-219ENST00000530404 818 ntTSL 518.77■□□□□ 0.63e-7■■□□□ 12.7
SMNDC1O75940 NME4-210ENST00000468031 1861 ntTSL 218.34■□□□□ 0.532e-7■■□□□ 12.7
SMNDC1O75940 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.413e-7■■□□□ 12.7
SMNDC1O75940 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.323e-7■■□□□ 12.7
SMNDC1O75940 TSPAN4-215ENST00000525334 860 ntTSL 316.59■□□□□ 0.253e-7■■□□□ 12.7
SMNDC1O75940 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.66■□□□□ 0.13e-7■■□□□ 12.7
SMNDC1O75940 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 03e-7■■□□□ 12.7
SMNDC1O75940 CABIN1-201ENST00000263119 7222 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.462e-8■■□□□ 12.7
SMNDC1O75940 CABIN1-203ENST00000398319 7480 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.52e-8■■□□□ 12.7
SMNDC1O75940 CABIN1-204ENST00000405822 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.512e-8■■□□□ 12.7
SMNDC1O75940 CABIN1-214ENST00000617531 7072 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.622e-8■■□□□ 12.7
SMNDC1O75940 RPL34-207ENST00000506397 549 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.72e-13■■□□□ 12.7
SMNDC1O75940 RPL34-205ENST00000503574 2627 ntTSL 29.46□□□□□ -0.92e-13■■□□□ 12.7
SMNDC1O75940 RPL34-204ENST00000502534 560 ntAPPRIS P1 TSL 4 BASIC8.21□□□□□ -1.12e-13■■□□□ 12.7
SMNDC1O75940 HNRNPA1-211ENST00000551665 925 ntTSL 27.82□□□□□ -1.163e-7■■□□□ 12.7
SMNDC1O75940 RPL34-201ENST00000394665 529 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.22e-13■■□□□ 12.7
SMNDC1O75940 RPL34-202ENST00000394667 441 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.22e-13■■□□□ 12.7
SMNDC1O75940 RPL34-206ENST00000504231 629 ntTSL 1 (best)7.35□□□□□ -1.232e-13■■□□□ 12.7
SMNDC1O75940 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.272e-13■■□□□ 12.7
SMNDC1O75940 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.064e-7■■□□□ 12.7
SMNDC1O75940 ASPSCR1-219ENST00000584454 1919 ntTSL 1 (best)21.2■□□□□ 0.984e-7■■□□□ 12.7
SMNDC1O75940 ASPSCR1-213ENST00000582355 1246 ntTSL 521.2■□□□□ 0.984e-7■■□□□ 12.7
Retrieved 100 of 11,362 protein–RNA pairs in 182.7 ms