RNA–Protein interactions for RNA: ENST00000420239.6

CHD2-202, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 1 (best) BASIC

Gene CHD2, Length 2,221 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-202ENST00000420239 CHIC1Q5VXU3 224 aa15.23■□□□□ 0.03
CHD2-202ENST00000420239 AEBP2Q6ZN18 517 aaPredicted RBP15.07■□□□□ 0
CHD2-202ENST00000420239 PHF23Q9BUL5 403 aaPredicted RBP13.52□□□□□ -0.24
CHD2-202ENST00000420239 PLPPR3Q6T4P5 718 aa12.61□□□□□ -0.39
CHD2-202ENST00000420239 SENP3Q9H4L4 574 aaPredicted RBP12.59□□□□□ -0.39
CHD2-202ENST00000420239 ADRA2BP18089 450 aa11.9□□□□□ -0.5
CHD2-202ENST00000420239 POTEDQ86YR6 584 aa11.82□□□□□ -0.52
CHD2-202ENST00000420239 PPP6R1Q9UPN7 881 aa11.75□□□□□ -0.53
CHD2-202ENST00000420239 KCNA4P22459 653 aa11.7□□□□□ -0.54
CHD2-202ENST00000420239 FOXD1Q16676 465 aa11.67□□□□□ -0.54
CHD2-202ENST00000420239 EHMT2Q96KQ7 1210 aa11.64□□□□□ -0.55
CHD2-202ENST00000420239 NISCHQ9Y2I1 1504 aa11.63□□□□□ -0.55
CHD2-202ENST00000420239 PPP4R3CPQ6ZMV5 832 aa11.21□□□□□ -0.61
CHD2-202ENST00000420239 CSRNP3Q8WYN3 585 aa11.2□□□□□ -0.62
CHD2-202ENST00000420239 SLC4A1APQ9BWU0 796 aaKnown RBP11.19□□□□□ -0.62
CHD2-202ENST00000420239 PIAS4Q8N2W9 510 aaPredicted RBP11.15□□□□□ -0.63
CHD2-202ENST00000420239 NCBP3Q53F19 620 aaKnown RBP11.02□□□□□ -0.65
CHD2-202ENST00000420239 NPM3O75607 178 aaKnown RBP10.96□□□□□ -0.65
CHD2-202ENST00000420239 ZBTB22O15209 634 aa10.82□□□□□ -0.68
CHD2-202ENST00000420239 CNKSR2Q8WXI2 1034 aa10.73□□□□□ -0.69
CHD2-202ENST00000420239 SCAF1Q9H7N4 1312 aaKnown RBP10.61□□□□□ -0.71
CHD2-202ENST00000420239 FOXD4L1Q9NU39 408 aa10.53□□□□□ -0.72
CHD2-202ENST00000420239 MAPK8IP2Q13387 824 aaPredicted RBP10.5□□□□□ -0.73
CHD2-202ENST00000420239 DNAJC5BQ9UF47 199 aa10.48□□□□□ -0.73
CHD2-202ENST00000420239 MSH5O43196 834 aa10.44□□□□□ -0.74
CHD2-202ENST00000420239 HRCP23327 699 aa10.39□□□□□ -0.75
CHD2-202ENST00000420239 RNF216Q9NWF9 866 aaPredicted RBP10.38□□□□□ -0.75
CHD2-202ENST00000420239 RTN4Q9NQC3 1192 aaKnown RBP10.29□□□□□ -0.76
CHD2-202ENST00000420239 SLC24A1O60721 1099 aa10.23□□□□□ -0.77
CHD2-202ENST00000420239 SLC4A2P04920 1241 aa10.22□□□□□ -0.77
CHD2-202ENST00000420239 AMER1Q5JTC6 1135 aaPredicted RBP10.19□□□□□ -0.78
CHD2-202ENST00000420239 HOXD11P31277 338 aaPredicted RBP10.19□□□□□ -0.78
CHD2-202ENST00000420239 PPARGC1BQ86YN6 1023 aaKnown RBP10.18□□□□□ -0.78
CHD2-202ENST00000420239 PELP1Q8IZL8 1130 aaKnown RBP10.17□□□□□ -0.78
CHD2-202ENST00000420239 DMRT2Q9Y5R5 561 aa10.17□□□□□ -0.78
CHD2-202ENST00000420239 MYO15BQ96JP2 1530 aa10.08□□□□□ -0.8
CHD2-202ENST00000420239 FKBP8Q14318 412 aa10.07□□□□□ -0.8
CHD2-202ENST00000420239 MYCNP04198 464 aaPredicted RBP10.07□□□□□ -0.8
CHD2-202ENST00000420239 ATXN8OSP0DMR3 200 aa10.05□□□□□ -0.8
CHD2-202ENST00000420239 PCGF6Q9BYE7 350 aa10.05□□□□□ -0.8
CHD2-202ENST00000420239 SHROOM4Q9ULL8 1493 aa9.97□□□□□ -0.81
CHD2-202ENST00000420239 SUPT5HO00267 1087 aaKnown RBP9.93□□□□□ -0.82
CHD2-202ENST00000420239 ZCCHC6Q5VYS8 1495 aaKnown RBP9.92□□□□□ -0.82
CHD2-202ENST00000420239 DCAF1Q9Y4B6 1507 aa9.9□□□□□ -0.82
CHD2-202ENST00000420239 ATF5Q9Y2D1 282 aaPredicted RBP9.84□□□□□ -0.83
CHD2-202ENST00000420239 CCDC180Q9P1Z9 1646 aa9.8□□□□□ -0.84
CHD2-202ENST00000420239 MYT1Q01538 1121 aa9.78□□□□□ -0.84
CHD2-202ENST00000420239 DCAF8L1A6NGE4 600 aa9.71□□□□□ -0.86
CHD2-202ENST00000420239 TRIM26Q12899 539 aaPredicted RBP9.7□□□□□ -0.86
CHD2-202ENST00000420239 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.7□□□□□ -0.862e-11■■□□□ 13
CHD2-202ENST00000420239 U3KPZ7 1027 aaPredicted RBP9.67□□□□□ -0.86
CHD2-202ENST00000420239 ZEB1P37275 1124 aaPredicted RBP9.66□□□□□ -0.86
CHD2-202ENST00000420239 SAMD1Q6SPF0 538 aaPredicted RBP9.66□□□□□ -0.86
CHD2-202ENST00000420239 LOC105371045A0A1W2PR82 267 aa9.64□□□□□ -0.87
CHD2-202ENST00000420239 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.63□□□□□ -0.87
CHD2-202ENST00000420239 HNRNPUL2Q1KMD3 747 aaKnown RBP9.63□□□□□ -0.87
CHD2-202ENST00000420239 ACIN1Q9UKV3 1341 aaKnown RBP9.61□□□□□ -0.87
CHD2-202ENST00000420239 NEUROD1Q13562 356 aa9.58□□□□□ -0.88
CHD2-202ENST00000420239 ZNF219Q9P2Y4 722 aaPredicted RBP9.54□□□□□ -0.88
CHD2-202ENST00000420239 GTF3C3Q9Y5Q9 886 aa9.51□□□□□ -0.89
CHD2-202ENST00000420239 FBXO3Q9UK99 471 aa9.46□□□□□ -0.89
CHD2-202ENST00000420239 SPDYE4A6NLX3 237 aa9.46□□□□□ -0.9
CHD2-202ENST00000420239 MKRN4PQ13434 485 aaPredicted RBP9.44□□□□□ -0.9
CHD2-202ENST00000420239 PLCB2Q00722 1185 aa9.43□□□□□ -0.9
CHD2-202ENST00000420239 ABCC9O60706 1549 aa9.42□□□□□ -0.9
CHD2-202ENST00000420239 PROM2Q8N271 834 aa9.4□□□□□ -0.9
CHD2-202ENST00000420239 CENPBP07199 599 aaPredicted RBP9.4□□□□□ -0.91
CHD2-202ENST00000420239 VASPP50552 380 aaPredicted RBP9.39□□□□□ -0.91
CHD2-202ENST00000420239 APLP2Q06481 763 aa9.35□□□□□ -0.91
CHD2-202ENST00000420239 IFNLR1Q8IU57 520 aaPredicted RBP9.33□□□□□ -0.92
CHD2-202ENST00000420239 DIEXFQ68CQ4 756 aaKnown RBP9.32□□□□□ -0.92
CHD2-202ENST00000420239 RSF1Q96T23 1441 aaPredicted RBP9.3□□□□□ -0.92
CHD2-202ENST00000420239 RB1CC1Q8TDY2 1594 aa9.29□□□□□ -0.92
CHD2-202ENST00000420239 DCAF8L2P0C7V8 631 aa9.28□□□□□ -0.92
CHD2-202ENST00000420239 HAP1P54257 671 aaPredicted RBP9.28□□□□□ -0.92
CHD2-202ENST00000420239 FBLN2P98095 1184 aa9.27□□□□□ -0.93
CHD2-202ENST00000420239 PKD2Q13563 968 aa9.26□□□□□ -0.93
CHD2-202ENST00000420239 TRIM41Q8WV44 630 aa9.25□□□□□ -0.93
CHD2-202ENST00000420239 SPINK5Q9NQ38 1064 aaPredicted RBP9.24□□□□□ -0.93
CHD2-202ENST00000420239 TRHP20396 242 aaPredicted RBP9.24□□□□□ -0.93
CHD2-202ENST00000420239 CACNB1Q02641 598 aaPredicted RBP9.23□□□□□ -0.93
CHD2-202ENST00000420239 CCER1Q8TC90 406 aaPredicted RBP9.23□□□□□ -0.93
CHD2-202ENST00000420239 TTBK1Q5TCY1 1321 aaPredicted RBP9.23□□□□□ -0.93
CHD2-202ENST00000420239 POLA2Q14181 598 aa9.22□□□□□ -0.93
CHD2-202ENST00000420239 BCL11AQ9H165 835 aa9.22□□□□□ -0.93
CHD2-202ENST00000420239 YTHDC1Q96MU7 727 aaKnown RBP9.19□□□□□ -0.94
CHD2-202ENST00000420239 FAM9AQ8IZU1 332 aaPredicted RBP9.18□□□□□ -0.94
CHD2-202ENST00000420239 WRNQ14191 1432 aaPredicted RBP eCLIP9.15□□□□□ -0.94
CHD2-202ENST00000420239 BCANQ96GW7 911 aa9.15□□□□□ -0.95
CHD2-202ENST00000420239 PRKCSHP14314 528 aaPredicted RBP9.13□□□□□ -0.95
CHD2-202ENST00000420239 ZNF316A6NFI3 1004 aaPredicted RBP9.13□□□□□ -0.95
CHD2-202ENST00000420239 CAPN15O75808 1086 aa9.12□□□□□ -0.95
CHD2-202ENST00000420239 ANP32EQ9BTT0 268 aa9.12□□□□□ -0.95
CHD2-202ENST00000420239 EIF4G1Q04637 1599 aaKnown RBP9.12□□□□□ -0.95
CHD2-202ENST00000420239 VSIG10Q8N0Z9 540 aa9.11□□□□□ -0.95
CHD2-202ENST00000420239 MIER1Q8N108 512 aa9.11□□□□□ -0.95
CHD2-202ENST00000420239 SCRIBQ14160 1630 aa9.1□□□□□ -0.95
CHD2-202ENST00000420239 TAOK2Q9UL54 1235 aa9.08□□□□□ -0.96
CHD2-202ENST00000420239 NPM1P06748 294 aaKnown RBP eCLIP9.07□□□□□ -0.96
CHD2-202ENST00000420239 RNF39Q9H2S5 420 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms