RNA–Protein interactions for RNA: ENST00000617930.1

CNOT3-209, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,047 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-209ENST00000617930 NISCHQ9Y2I1 1504 aa39.32■■■■□ 3.88
CNOT3-209ENST00000617930 CCDC180Q9P1Z9 1646 aa34.25■■■■□ 3.07
CNOT3-209ENST00000617930 ZCCHC6Q5VYS8 1495 aaKnown RBP33.03■■■□□ 2.88
CNOT3-209ENST00000617930 ABCC9O60706 1549 aa32.6■■■□□ 2.81
CNOT3-209ENST00000617930 DCAF8L2P0C7V8 631 aa32.46■■■□□ 2.79
CNOT3-209ENST00000617930 DCAF1Q9Y4B6 1507 aa32.42■■■□□ 2.78
CNOT3-209ENST00000617930 SHROOM4Q9ULL8 1493 aa32.11■■■□□ 2.73
CNOT3-209ENST00000617930 MYO15BQ96JP2 1530 aa32.04■■■□□ 2.72
CNOT3-209ENST00000617930 NACADO15069 1562 aa31.89■■■□□ 2.7
CNOT3-209ENST00000617930 RB1CC1Q8TDY2 1594 aa31.65■■■□□ 2.66
CNOT3-209ENST00000617930 SCRIBQ14160 1630 aa31.61■■■□□ 2.65
CNOT3-209ENST00000617930 UNC13AQ9UPW8 1703 aa31.21■■■□□ 2.59
CNOT3-209ENST00000617930 SUPT5HO00267 1087 aaKnown RBP31.05■■■□□ 2.56
CNOT3-209ENST00000617930 BICRAQ9NZM4 1560 aa30.89■■■□□ 2.54
CNOT3-209ENST00000617930 PABPN1Q86U42 306 aaKnown RBP eCLIP30.74■■■□□ 2.51
CNOT3-209ENST00000617930 CECR2Q9BXF3 1484 aa30.68■■■□□ 2.5
CNOT3-209ENST00000617930 RSF1Q96T23 1441 aaPredicted RBP30.5■■■□□ 2.47
CNOT3-209ENST00000617930 MROH2BQ7Z745 1585 aa30.45■■■□□ 2.47
CNOT3-209ENST00000617930 BAZ1AQ9NRL2 1556 aaPredicted RBP30.3■■■□□ 2.44
CNOT3-209ENST00000617930 SMARCA4P51532 1647 aa30.25■■■□□ 2.43
CNOT3-209ENST00000617930 WIZO95785 1651 aa30.21■■■□□ 2.43
CNOT3-209ENST00000617930 CHIC1Q5VXU3 224 aa29.95■■■□□ 2.38
CNOT3-209ENST00000617930 EIF4G1Q04637 1599 aaKnown RBP29.88■■■□□ 2.37
CNOT3-209ENST00000617930 PEG3Q9GZU2 1588 aa29.85■■■□□ 2.37
CNOT3-209ENST00000617930 TOP2AP11388 1531 aaKnown RBP29.78■■■□□ 2.36
CNOT3-209ENST00000617930 ATAD2BQ9ULI0 1458 aa29.78■■■□□ 2.36
CNOT3-209ENST00000617930 SMARCA2P51531 1590 aa29.65■■■□□ 2.34
CNOT3-209ENST00000617930 BAZ1BQ9UIG0 1483 aaKnown RBP29.55■■■□□ 2.32
CNOT3-209ENST00000617930 CCDC88BA6NC98 1476 aa29.53■■■□□ 2.32
CNOT3-209ENST00000617930 NCAPD3P42695 1498 aa29.48■■■□□ 2.31
CNOT3-209ENST00000617930 CC2D2AQ9P2K1 1620 aa29.48■■■□□ 2.31
CNOT3-209ENST00000617930 HMGXB3Q12766 1538 aa29.43■■■□□ 2.3
CNOT3-209ENST00000617930 TRIM41Q8WV44 630 aa29.04■■■□□ 2.24
CNOT3-209ENST00000617930 DNAJC5BQ9UF47 199 aa29■■■□□ 2.23
CNOT3-209ENST00000617930 LOC105371045A0A1W2PR82 267 aa28.96■■■□□ 2.23
CNOT3-209ENST00000617930 ABCC8Q09428 1581 aa28.96■■■□□ 2.23
CNOT3-209ENST00000617930 CFTRP13569 1480 aa28.83■■■□□ 2.21
CNOT3-209ENST00000617930 CADPSQ9ULU8 1353 aa28.72■■■□□ 2.19
CNOT3-209ENST00000617930 FAM9AQ8IZU1 332 aaPredicted RBP28.69■■■□□ 2.18
CNOT3-209ENST00000617930 PRDM2Q13029 1718 aa28.66■■■□□ 2.18
CNOT3-209ENST00000617930 NESP48681 1621 aa28.66■■■□□ 2.18
CNOT3-209ENST00000617930 SYNJ1O43426 1573 aa28.65■■■□□ 2.18
CNOT3-209ENST00000617930 WRNQ14191 1432 aaPredicted RBP eCLIP28.64■■■□□ 2.18
CNOT3-209ENST00000617930 LAMC3Q9Y6N6 1575 aa28.47■■■□□ 2.15
CNOT3-209ENST00000617930 CUX1P39880 1505 aa28.46■■■□□ 2.15
CNOT3-209ENST00000617930 TOP2BQ02880 1626 aa28.45■■■□□ 2.14
CNOT3-209ENST00000617930 BIVM-ERCC5R4GMW8 1640 aa28.43■■■□□ 2.14
CNOT3-209ENST00000617930 FANCD2Q9BXW9 1451 aa28.43■■■□□ 2.14
CNOT3-209ENST00000617930 EHMT2Q96KQ7 1210 aa28.38■■■□□ 2.13
CNOT3-209ENST00000617930 SOGA1O94964 1423 aa28.37■■■□□ 2.13
CNOT3-209ENST00000617930 RUSC2Q8N2Y8 1516 aa28.34■■■□□ 2.13
CNOT3-209ENST00000617930 KIF21AQ7Z4S6 1674 aa28.27■■■□□ 2.12
CNOT3-209ENST00000617930 CEP164Q9UPV0 1460 aa28.21■■■□□ 2.11
CNOT3-209ENST00000617930 PDS5BQ9NTI5 1447 aa28.2■■■□□ 2.1
CNOT3-209ENST00000617930 URB2Q14146 1524 aaKnown RBP28.16■■■□□ 2.1
CNOT3-209ENST00000617930 DNMBPQ6XZF7 1577 aa28.15■■■□□ 2.1
CNOT3-209ENST00000617930 TOPBP1Q92547 1522 aa28.14■■■□□ 2.09
CNOT3-209ENST00000617930 FGD5Q6ZNL6 1462 aa28.12■■■□□ 2.09
CNOT3-209ENST00000617930 EEA1Q15075 1411 aa28.06■■■□□ 2.08
CNOT3-209ENST00000617930 CSRNP3Q8WYN3 585 aa28.04■■■□□ 2.08
CNOT3-209ENST00000617930 PCGF6Q9BYE7 350 aa28.02■■■□□ 2.08
CNOT3-209ENST00000617930 POLA1P09884 1462 aaPredicted RBP28.01■■■□□ 2.07
CNOT3-209ENST00000617930 RAD54L2Q9Y4B4 1467 aa27.97■■■□□ 2.07
CNOT3-209ENST00000617930 MRC2Q9UBG0 1479 aa27.91■■■□□ 2.06
CNOT3-209ENST00000617930 CUX2O14529 1486 aa27.89■■■□□ 2.06
CNOT3-209ENST00000617930 KIF27Q86VH2 1401 aa27.86■■■□□ 2.05
CNOT3-209ENST00000617930 ABCA10Q8WWZ4 1543 aa27.83■■■□□ 2.05
CNOT3-209ENST00000617930 WDR97A6NE52 1622 aa27.83■■■□□ 2.05
CNOT3-209ENST00000617930 ERCC6Q03468 1493 aa27.82■■■□□ 2.04
CNOT3-209ENST00000617930 KIF21BO75037 1637 aa27.82■■■□□ 2.04
CNOT3-209ENST00000617930 THOC2Q8NI27 1593 aaKnown RBP27.81■■■□□ 2.04
CNOT3-209ENST00000617930 TNIKQ9UKE5 1360 aa27.81■■■□□ 2.04
CNOT3-209ENST00000617930 WDR62O43379 1518 aa27.81■■■□□ 2.04
CNOT3-209ENST00000617930 RAPGEF2Q9Y4G8 1499 aa27.77■■■□□ 2.04
CNOT3-209ENST00000617930 TARBP1Q13395 1621 aaKnown RBP27.76■■■□□ 2.04
CNOT3-209ENST00000617930 GOLGA3Q08378 1498 aa27.76■■■□□ 2.03
CNOT3-209ENST00000617930 TRIM26Q12899 539 aaPredicted RBP27.75■■■□□ 2.03
CNOT3-209ENST00000617930 PRXQ9BXM0 1461 aa27.75■■■□□ 2.03
CNOT3-209ENST00000617930 CEP162Q5TB80 1403 aa27.75■■■□□ 2.03
CNOT3-209ENST00000617930 IGF1RP08069 1367 aa27.73■■■□□ 2.03
CNOT3-209ENST00000617930 UBTFP17480 764 aaKnown RBP27.72■■■□□ 2.03
CNOT3-209ENST00000617930 HRCP23327 699 aa27.7■■■□□ 2.02
CNOT3-209ENST00000617930 TDRD9Q8NDG6 1382 aaKnown RBP27.66■■■□□ 2.02
CNOT3-209ENST00000617930 ABCA5Q8WWZ7 1642 aa27.66■■■□□ 2.02
CNOT3-209ENST00000617930 ERICH3Q5RHP9 1530 aa27.62■■■□□ 2.01
CNOT3-209ENST00000617930 PPARGC1BQ86YN6 1023 aaKnown RBP27.6■■■□□ 2.01
CNOT3-209ENST00000617930 ZNF608Q9ULD9 1512 aaPredicted RBP27.55■■■□□ 2
CNOT3-209ENST00000617930 GAPVD1Q14C86 1478 aa27.55■■■□□ 2
CNOT3-209ENST00000617930 CARMIL1Q5VZK9 1371 aa27.53■■■□□ 2
CNOT3-209ENST00000617930 IFT140Q96RY7 1462 aa27.53■■■□□ 2
CNOT3-209ENST00000617930 AQRO60306 1485 aaKnown RBP eCLIP27.52■■■□□ 22e-9■■■■■ 37
CNOT3-209ENST00000617930 PBRM1Q86U86 1689 aa27.45■■□□□ 1.98
CNOT3-209ENST00000617930 CUL7Q14999 1698 aa27.44■■□□□ 1.98
CNOT3-209ENST00000617930 CLIP1P30622 1438 aa27.4■■□□□ 1.98
CNOT3-209ENST00000617930 EIF4G3O43432 1585 aaKnown RBP27.4■■□□□ 1.98
CNOT3-209ENST00000617930 GRIN2BQ13224 1484 aa27.32■■□□□ 1.96
CNOT3-209ENST00000617930 RANGAP1P46060 587 aaPredicted RBP27.32■■□□□ 1.96
CNOT3-209ENST00000617930 ADAMTS12P58397 1594 aa27.29■■□□□ 1.96
CNOT3-209ENST00000617930 TTBK1Q5TCY1 1321 aaPredicted RBP27.23■■□□□ 1.95
CNOT3-209ENST00000617930 SNAPC4Q5SXM2 1469 aa27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms