RNA–Protein interactions for RNA: ENST00000629136.1

CHD2-217, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 5

Gene CHD2, Length 480 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-217ENST00000629136 NISCHQ9Y2I1 1504 aa26.85■■□□□ 1.89
CHD2-217ENST00000629136 CCDC180Q9P1Z9 1646 aa24.1■■□□□ 1.45
CHD2-217ENST00000629136 ABCC9O60706 1549 aa23.64■■□□□ 1.38
CHD2-217ENST00000629136 RB1CC1Q8TDY2 1594 aa22.7■■□□□ 1.22
CHD2-217ENST00000629136 NACADO15069 1562 aa22.6■■□□□ 1.21
CHD2-217ENST00000629136 MYO15BQ96JP2 1530 aa22.4■■□□□ 1.18
CHD2-217ENST00000629136 UNC13AQ9UPW8 1703 aa22.37■■□□□ 1.17
CHD2-217ENST00000629136 ZCCHC6Q5VYS8 1495 aaKnown RBP22.36■■□□□ 1.17
CHD2-217ENST00000629136 DCAF8L2P0C7V8 631 aa22.32■■□□□ 1.16
CHD2-217ENST00000629136 DCAF1Q9Y4B6 1507 aa22.22■■□□□ 1.15
CHD2-217ENST00000629136 BICRAQ9NZM4 1560 aa22.08■■□□□ 1.12
CHD2-217ENST00000629136 PABPN1Q86U42 306 aaKnown RBP eCLIP21.96■■□□□ 1.11
CHD2-217ENST00000629136 SCRIBQ14160 1630 aa21.91■■□□□ 1.1
CHD2-217ENST00000629136 DNAJC5BQ9UF47 199 aa21.84■■□□□ 1.09
CHD2-217ENST00000629136 SHROOM4Q9ULL8 1493 aa21.77■■□□□ 1.07
CHD2-217ENST00000629136 EIF4G1Q04637 1599 aaKnown RBP21.48■■□□□ 1.03
CHD2-217ENST00000629136 CC2D2AQ9P2K1 1620 aa21.45■■□□□ 1.02
CHD2-217ENST00000629136 CECR2Q9BXF3 1484 aa21.26■□□□□ 0.99
CHD2-217ENST00000629136 SMARCA4P51532 1647 aa20.95■□□□□ 0.94
CHD2-217ENST00000629136 BAZ1AQ9NRL2 1556 aaPredicted RBP20.84■□□□□ 0.93
CHD2-217ENST00000629136 NCAPD3P42695 1498 aa20.81■□□□□ 0.92
CHD2-217ENST00000629136 ATAD2BQ9ULI0 1458 aa20.8■□□□□ 0.92
CHD2-217ENST00000629136 SMARCA2P51531 1590 aa20.8■□□□□ 0.92
CHD2-217ENST00000629136 HMGXB3Q12766 1538 aa20.78■□□□□ 0.92
CHD2-217ENST00000629136 PEG3Q9GZU2 1588 aa20.75■□□□□ 0.91
CHD2-217ENST00000629136 MROH2BQ7Z745 1585 aa20.7■□□□□ 0.9
CHD2-217ENST00000629136 BAZ1BQ9UIG0 1483 aaKnown RBP20.62■□□□□ 0.89
CHD2-217ENST00000629136 WIZO95785 1651 aa20.53■□□□□ 0.88
CHD2-217ENST00000629136 NESP48681 1621 aa20.43■□□□□ 0.86
CHD2-217ENST00000629136 LAMC3Q9Y6N6 1575 aa20.38■□□□□ 0.85
CHD2-217ENST00000629136 ERCC6Q03468 1493 aa20.37■□□□□ 0.85
CHD2-217ENST00000629136 RSF1Q96T23 1441 aaPredicted RBP20.33■□□□□ 0.84
CHD2-217ENST00000629136 KIF21AQ7Z4S6 1674 aa20.31■□□□□ 0.84
CHD2-217ENST00000629136 CUX2O14529 1486 aa20.28■□□□□ 0.84
CHD2-217ENST00000629136 THOC2Q8NI27 1593 aaKnown RBP20.27■□□□□ 0.84
CHD2-217ENST00000629136 TOP2AP11388 1531 aaKnown RBP20.26■□□□□ 0.83
CHD2-217ENST00000629136 CADPSQ9ULU8 1353 aa20.15■□□□□ 0.82
CHD2-217ENST00000629136 PDS5BQ9NTI5 1447 aa20.13■□□□□ 0.81
CHD2-217ENST00000629136 PRDM2Q13029 1718 aa20.09■□□□□ 0.81
CHD2-217ENST00000629136 CFTRP13569 1480 aa20.05■□□□□ 0.8
CHD2-217ENST00000629136 MRC2Q9UBG0 1479 aa20■□□□□ 0.79
CHD2-217ENST00000629136 WDR62O43379 1518 aa20■□□□□ 0.79
CHD2-217ENST00000629136 FANCD2Q9BXW9 1451 aa19.98■□□□□ 0.79
CHD2-217ENST00000629136 CEP164Q9UPV0 1460 aa19.98■□□□□ 0.79
CHD2-217ENST00000629136 CCDC88BA6NC98 1476 aa19.96■□□□□ 0.79
CHD2-217ENST00000629136 URB2Q14146 1524 aaKnown RBP19.83■□□□□ 0.77
CHD2-217ENST00000629136 DNAJC5Q9H3Z4 198 aa19.81■□□□□ 0.76
CHD2-217ENST00000629136 TOPBP1Q92547 1522 aa19.66■□□□□ 0.74
CHD2-217ENST00000629136 DNMBPQ6XZF7 1577 aa19.65■□□□□ 0.74
CHD2-217ENST00000629136 ABCC8Q09428 1581 aa19.58■□□□□ 0.73
CHD2-217ENST00000629136 IFT140Q96RY7 1462 aa19.55■□□□□ 0.72
CHD2-217ENST00000629136 SUPT5HO00267 1087 aaKnown RBP19.53■□□□□ 0.72
CHD2-217ENST00000629136 TARBP1Q13395 1621 aaKnown RBP19.53■□□□□ 0.72
CHD2-217ENST00000629136 EIF4G3O43432 1585 aaKnown RBP19.52■□□□□ 0.71
CHD2-217ENST00000629136 ZNF608Q9ULD9 1512 aaPredicted RBP19.51■□□□□ 0.71
CHD2-217ENST00000629136 POLA1P09884 1462 aaPredicted RBP19.48■□□□□ 0.71
CHD2-217ENST00000629136 CUX1P39880 1505 aa19.44■□□□□ 0.7
CHD2-217ENST00000629136 WDR97A6NE52 1622 aa19.4■□□□□ 0.7
CHD2-217ENST00000629136 FGD5Q6ZNL6 1462 aa19.39■□□□□ 0.69
CHD2-217ENST00000629136 RAD54L2Q9Y4B4 1467 aa19.37■□□□□ 0.69
CHD2-217ENST00000629136 CHD1O14646 1710 aa19.36■□□□□ 0.69
CHD2-217ENST00000629136 AQRO60306 1485 aaKnown RBP eCLIP19.33■□□□□ 0.682e-19■■■■□ 20.3
CHD2-217ENST00000629136 SOGA1O94964 1423 aa19.31■□□□□ 0.68
CHD2-217ENST00000629136 BIVM-ERCC5R4GMW8 1640 aa19.29■□□□□ 0.68
CHD2-217ENST00000629136 PBRM1Q86U86 1689 aa19.27■□□□□ 0.68
CHD2-217ENST00000629136 OSCARQ8IYS5 282 aa19.26■□□□□ 0.67
CHD2-217ENST00000629136 SYNJ1O43426 1573 aa19.24■□□□□ 0.67
CHD2-217ENST00000629136 TOP2BQ02880 1626 aa19.24■□□□□ 0.67
CHD2-217ENST00000629136 ABCA5Q8WWZ7 1642 aa19.22■□□□□ 0.67
CHD2-217ENST00000629136 TDRD9Q8NDG6 1382 aaKnown RBP19.22■□□□□ 0.67
CHD2-217ENST00000629136 SNAPC4Q5SXM2 1469 aa19.19■□□□□ 0.66
CHD2-217ENST00000629136 ABCA10Q8WWZ4 1543 aa19.19■□□□□ 0.66
CHD2-217ENST00000629136 RIMBP3CA6NJZ7 1639 aa19.18■□□□□ 0.66
CHD2-217ENST00000629136 RIMBP3BA6NNM3 1639 aa19.18■□□□□ 0.66
CHD2-217ENST00000629136 RIMBP3Q9UFD9 1639 aa19.18■□□□□ 0.66
CHD2-217ENST00000629136 WRNQ14191 1432 aaPredicted RBP eCLIP19.17■□□□□ 0.66
CHD2-217ENST00000629136 GRIN2BQ13224 1484 aa19.15■□□□□ 0.66
CHD2-217ENST00000629136 MAGI1Q96QZ7 1491 aaPredicted RBP19.15■□□□□ 0.66
CHD2-217ENST00000629136 GAPVD1Q14C86 1478 aa19.12■□□□□ 0.65
CHD2-217ENST00000629136 ARHGEF11O15085 1522 aa19.11■□□□□ 0.65
CHD2-217ENST00000629136 CLASP1Q7Z460 1538 aa19.07■□□□□ 0.64
CHD2-217ENST00000629136 SYNJ2O15056 1496 aa19.07■□□□□ 0.64
CHD2-217ENST00000629136 ADAMTS12P58397 1594 aa19.04■□□□□ 0.64
CHD2-217ENST00000629136 FBLN2P98095 1184 aa19.04■□□□□ 0.64
CHD2-217ENST00000629136 TRIM41Q8WV44 630 aa19.04■□□□□ 0.64
CHD2-217ENST00000629136 ERICH3Q5RHP9 1530 aa18.97■□□□□ 0.63
CHD2-217ENST00000629136 CHMP7Q8WUX9 453 aaPredicted RBP18.96■□□□□ 0.63
CHD2-217ENST00000629136 GRIN2AQ12879 1464 aa18.94■□□□□ 0.62
CHD2-217ENST00000629136 ARAP1Q96P48 1450 aa18.94■□□□□ 0.62
CHD2-217ENST00000629136 CEP170Q5SW79 1584 aa18.91■□□□□ 0.62
CHD2-217ENST00000629136 FHAD1B1AJZ9 1412 aa18.88■□□□□ 0.61
CHD2-217ENST00000629136 NUP160Q12769 1436 aa18.85■□□□□ 0.61
CHD2-217ENST00000629136 SHROOM2Q13796 1616 aa18.84■□□□□ 0.61
CHD2-217ENST00000629136 CUL7Q14999 1698 aa18.81■□□□□ 0.6
CHD2-217ENST00000629136 CYB5RLQ6IPT4 315 aa18.79■□□□□ 0.6
CHD2-217ENST00000629136 ERCC6L2Q5T890 1561 aa18.79■□□□□ 0.6
CHD2-217ENST00000629136 RUSC2Q8N2Y8 1516 aa18.79■□□□□ 0.6
CHD2-217ENST00000629136 KIF27Q86VH2 1401 aa18.75■□□□□ 0.59
CHD2-217ENST00000629136 IGF1RP08069 1367 aa18.68■□□□□ 0.58
CHD2-217ENST00000629136 PRG4Q92954 1404 aaPredicted RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms