RNA–Protein interactions for RNA: ENST00000589223.5

AP3D1-206, Transcript of adaptor related protein complex 3 subunit delta 1, humanhuman

TSL 2

Gene AP3D1, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP3D1-206ENST00000589223 NISCHQ9Y2I1 1504 aa24.73■■□□□ 1.55
AP3D1-206ENST00000589223 SHROOM4Q9ULL8 1493 aa21.92■■□□□ 1.1
AP3D1-206ENST00000589223 DCAF8L2P0C7V8 631 aa21.58■■□□□ 1.04
AP3D1-206ENST00000589223 SUPT5HO00267 1087 aaKnown RBP21.42■■□□□ 1.02
AP3D1-206ENST00000589223 CCDC180Q9P1Z9 1646 aa20.81■□□□□ 0.92
AP3D1-206ENST00000589223 ZCCHC6Q5VYS8 1495 aaKnown RBP20.8■□□□□ 0.92
AP3D1-206ENST00000589223 CHIC1Q5VXU3 224 aa20.32■□□□□ 0.84
AP3D1-206ENST00000589223 MYO15BQ96JP2 1530 aa20.28■□□□□ 0.84
AP3D1-206ENST00000589223 EHMT2Q96KQ7 1210 aa20.23■□□□□ 0.83
AP3D1-206ENST00000589223 ABCC9O60706 1549 aa20.22■□□□□ 0.83
AP3D1-206ENST00000589223 LOC105371045A0A1W2PR82 267 aa20.15■□□□□ 0.82
AP3D1-206ENST00000589223 SCRIBQ14160 1630 aa20.03■□□□□ 0.8
AP3D1-206ENST00000589223 PCGF6Q9BYE7 350 aa19.98■□□□□ 0.79
AP3D1-206ENST00000589223 FAM9AQ8IZU1 332 aaPredicted RBP19.98■□□□□ 0.79
AP3D1-206ENST00000589223 DCAF1Q9Y4B6 1507 aa19.92■□□□□ 0.78
AP3D1-206ENST00000589223 PPARGC1BQ86YN6 1023 aaKnown RBP19.72■□□□□ 0.75
AP3D1-206ENST00000589223 TRIM41Q8WV44 630 aa19.61■□□□□ 0.73
AP3D1-206ENST00000589223 RSF1Q96T23 1441 aaPredicted RBP19.61■□□□□ 0.73
AP3D1-206ENST00000589223 CECR2Q9BXF3 1484 aa19.61■□□□□ 0.73
AP3D1-206ENST00000589223 PABPN1Q86U42 306 aaKnown RBP eCLIP19.51■□□□□ 0.713e-6■■□□□ 14.5
AP3D1-206ENST00000589223 HRCP23327 699 aa19.47■□□□□ 0.71
AP3D1-206ENST00000589223 RB1CC1Q8TDY2 1594 aa19.46■□□□□ 0.71
AP3D1-206ENST00000589223 TTBK1Q5TCY1 1321 aaPredicted RBP19.45■□□□□ 0.7
AP3D1-206ENST00000589223 NACADO15069 1562 aa19.42■□□□□ 0.7
AP3D1-206ENST00000589223 MROH2BQ7Z745 1585 aa19.4■□□□□ 0.7
AP3D1-206ENST00000589223 WIZO95785 1651 aa19.3■□□□□ 0.68
AP3D1-206ENST00000589223 TRIM26Q12899 539 aaPredicted RBP19.12■□□□□ 0.65
AP3D1-206ENST00000589223 UNC13AQ9UPW8 1703 aa19.06■□□□□ 0.64
AP3D1-206ENST00000589223 RANGAP1P46060 587 aaPredicted RBP19.06■□□□□ 0.64
AP3D1-206ENST00000589223 ABCC8Q09428 1581 aa18.96■□□□□ 0.63
AP3D1-206ENST00000589223 BAZ1AQ9NRL2 1556 aaPredicted RBP18.94■□□□□ 0.62
AP3D1-206ENST00000589223 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.89■□□□□ 0.61
AP3D1-206ENST00000589223 SMARCA4P51532 1647 aa18.88■□□□□ 0.61
AP3D1-206ENST00000589223 CCDC88BA6NC98 1476 aa18.87■□□□□ 0.61
AP3D1-206ENST00000589223 BICRAQ9NZM4 1560 aa18.86■□□□□ 0.61
AP3D1-206ENST00000589223 UBTFP17480 764 aaKnown RBP18.84■□□□□ 0.61
AP3D1-206ENST00000589223 SOGA1O94964 1423 aa18.79■□□□□ 0.6
AP3D1-206ENST00000589223 RUSC2Q8N2Y8 1516 aa18.77■□□□□ 0.59
AP3D1-206ENST00000589223 PELP1Q8IZL8 1130 aaKnown RBP18.76■□□□□ 0.59
AP3D1-206ENST00000589223 TOP2AP11388 1531 aaKnown RBP18.73■□□□□ 0.59
AP3D1-206ENST00000589223 SMARCA2P51531 1590 aa18.72■□□□□ 0.59
AP3D1-206ENST00000589223 CCER1Q8TC90 406 aaPredicted RBP18.65■□□□□ 0.58
AP3D1-206ENST00000589223 EIF4G1Q04637 1599 aaKnown RBP18.62■□□□□ 0.57
AP3D1-206ENST00000589223 CSRNP3Q8WYN3 585 aa18.58■□□□□ 0.56
AP3D1-206ENST00000589223 HNRNPUL2Q1KMD3 747 aaKnown RBP18.53■□□□□ 0.56
AP3D1-206ENST00000589223 ATAD2BQ9ULI0 1458 aa18.53■□□□□ 0.56
AP3D1-206ENST00000589223 BAZ1BQ9UIG0 1483 aaKnown RBP18.5■□□□□ 0.55
AP3D1-206ENST00000589223 CEP162Q5TB80 1403 aa18.5■□□□□ 0.55
AP3D1-206ENST00000589223 WRNQ14191 1432 aaPredicted RBP eCLIP18.43■□□□□ 0.54
AP3D1-206ENST00000589223 ZEB1P37275 1124 aaPredicted RBP18.37■□□□□ 0.53
AP3D1-206ENST00000589223 SYNJ1O43426 1573 aa18.36■□□□□ 0.53
AP3D1-206ENST00000589223 SCAF1Q9H7N4 1312 aaKnown RBP18.32■□□□□ 0.52
AP3D1-206ENST00000589223 PEG3Q9GZU2 1588 aa18.28■□□□□ 0.52
AP3D1-206ENST00000589223 TNIKQ9UKE5 1360 aa18.25■□□□□ 0.51
AP3D1-206ENST00000589223 ITGAEP38570 1179 aa18.25■□□□□ 0.51
AP3D1-206ENST00000589223 RAPGEF2Q9Y4G8 1499 aa18.23■□□□□ 0.51
AP3D1-206ENST00000589223 APLP2Q06481 763 aa18.22■□□□□ 0.51
AP3D1-206ENST00000589223 YTHDC1Q96MU7 727 aaKnown RBP18.19■□□□□ 0.5
AP3D1-206ENST00000589223 GOLGA3Q08378 1498 aa18.19■□□□□ 0.5
AP3D1-206ENST00000589223 CLIP1P30622 1438 aa18.17■□□□□ 0.5
AP3D1-206ENST00000589223 DNAJC5BQ9UF47 199 aa18.17■□□□□ 0.5
AP3D1-206ENST00000589223 ATP1B4Q9UN42 357 aaPredicted RBP18.15■□□□□ 0.5
AP3D1-206ENST00000589223 P3H3Q8IVL6 736 aa18.15■□□□□ 0.5
AP3D1-206ENST00000589223 DIEXFQ68CQ4 756 aaKnown RBP18.12■□□□□ 0.49
AP3D1-206ENST00000589223 KANK4Q5T7N3 995 aaPredicted RBP18.1■□□□□ 0.49
AP3D1-206ENST00000589223 NCAPD3P42695 1498 aa18.08■□□□□ 0.48
AP3D1-206ENST00000589223 MYT1Q01538 1121 aa18.05■□□□□ 0.48
AP3D1-206ENST00000589223 CEP164Q9UPV0 1460 aa18.05■□□□□ 0.48
AP3D1-206ENST00000589223 EEA1Q15075 1411 aa18.03■□□□□ 0.48
AP3D1-206ENST00000589223 NEUROD1Q13562 356 aa18.02■□□□□ 0.48
AP3D1-206ENST00000589223 CUX1P39880 1505 aa18.02■□□□□ 0.48
AP3D1-206ENST00000589223 TOP2BQ02880 1626 aa17.96■□□□□ 0.47
AP3D1-206ENST00000589223 CC2D2AQ9P2K1 1620 aa17.96■□□□□ 0.47
AP3D1-206ENST00000589223 NESP48681 1621 aa17.94■□□□□ 0.46
AP3D1-206ENST00000589223 HMGXB3Q12766 1538 aa17.94■□□□□ 0.46
AP3D1-206ENST00000589223 VPS8Q8N3P4 1428 aa17.92■□□□□ 0.46
AP3D1-206ENST00000589223 CFTRP13569 1480 aa17.92■□□□□ 0.46
AP3D1-206ENST00000589223 KIF21BO75037 1637 aa17.89■□□□□ 0.45
AP3D1-206ENST00000589223 CADPSQ9ULU8 1353 aa17.87■□□□□ 0.45
AP3D1-206ENST00000589223 MIER1Q8N108 512 aa17.86■□□□□ 0.45
AP3D1-206ENST00000589223 ZNF316A6NFI3 1004 aaPredicted RBP17.86■□□□□ 0.45
AP3D1-206ENST00000589223 CUX2O14529 1486 aa17.86■□□□□ 0.45
AP3D1-206ENST00000589223 ARID3CA6NKF2 412 aa17.84■□□□□ 0.45
AP3D1-206ENST00000589223 ARAP1Q96P48 1450 aa17.84■□□□□ 0.45
AP3D1-206ENST00000589223 GTF3C3Q9Y5Q9 886 aa17.83■□□□□ 0.45
AP3D1-206ENST00000589223 BIVM-ERCC5R4GMW8 1640 aa17.82■□□□□ 0.44
AP3D1-206ENST00000589223 KIF27Q86VH2 1401 aa17.82■□□□□ 0.44
AP3D1-206ENST00000589223 RAD54L2Q9Y4B4 1467 aa17.8■□□□□ 0.44
AP3D1-206ENST00000589223 FAM50AQ14320 339 aaKnown RBP17.8■□□□□ 0.44
AP3D1-206ENST00000589223 ACIN1Q9UKV3 1341 aaKnown RBP17.79■□□□□ 0.44
AP3D1-206ENST00000589223 PRXQ9BXM0 1461 aa17.78■□□□□ 0.44
AP3D1-206ENST00000589223 FGD5Q6ZNL6 1462 aa17.77■□□□□ 0.44
AP3D1-206ENST00000589223 IGF1RP08069 1367 aa17.75■□□□□ 0.43
AP3D1-206ENST00000589223 HIRIP3Q9BW71 556 aaPredicted RBP17.74■□□□□ 0.43
AP3D1-206ENST00000589223 FANCD2Q9BXW9 1451 aa17.74■□□□□ 0.43
AP3D1-206ENST00000589223 CARMIL1Q5VZK9 1371 aa17.69■□□□□ 0.42
AP3D1-206ENST00000589223 ARHGAP35Q9NRY4 1499 aa17.67■□□□□ 0.42
AP3D1-206ENST00000589223 TDRD9Q8NDG6 1382 aaKnown RBP17.67■□□□□ 0.42
AP3D1-206ENST00000589223 SIN3AQ96ST3 1273 aa17.65■□□□□ 0.42
AP3D1-206ENST00000589223 CENPBP07199 599 aaPredicted RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms