RNA–Protein interactions for RNA: ENST00000397397.6

TSPAN4-203, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSPAN4, Length 1,423 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-203ENST00000397397 NISCHQ9Y2I1 1504 aa55.77■■■■■ 6.52
TSPAN4-203ENST00000397397 CCDC180Q9P1Z9 1646 aa49.23■■■■■ 5.47
TSPAN4-203ENST00000397397 ABCC9O60706 1549 aa47.92■■■■■ 5.26
TSPAN4-203ENST00000397397 ZCCHC6Q5VYS8 1495 aaKnown RBP46.62■■■■■ 5.05
TSPAN4-203ENST00000397397 DCAF8L2P0C7V8 631 aa46.37■■■■■ 5.01
TSPAN4-203ENST00000397397 DCAF1Q9Y4B6 1507 aa46.14■■■■■ 4.98
TSPAN4-203ENST00000397397 NACADO15069 1562 aa46.08■■■■■ 4.97
TSPAN4-203ENST00000397397 MYO15BQ96JP2 1530 aa46.02■■■■■ 4.96
TSPAN4-203ENST00000397397 RB1CC1Q8TDY2 1594 aa45.96■■■■■ 4.95
TSPAN4-203ENST00000397397 SCRIBQ14160 1630 aa45.04■■■■■ 4.8
TSPAN4-203ENST00000397397 UNC13AQ9UPW8 1703 aa44.96■■■■■ 4.79
TSPAN4-203ENST00000397397 PABPN1Q86U42 306 aaKnown RBP eCLIP44.76■■■■■ 4.765e-10■■■□□ 17.3
TSPAN4-203ENST00000397397 SHROOM4Q9ULL8 1493 aa44.64■■■■■ 4.74
TSPAN4-203ENST00000397397 BICRAQ9NZM4 1560 aa44.62■■■■■ 4.73
TSPAN4-203ENST00000397397 DNAJC5BQ9UF47 199 aa44.24■■■■■ 4.67
TSPAN4-203ENST00000397397 EIF4G1Q04637 1599 aaKnown RBP43.43■■■■■ 4.54
TSPAN4-203ENST00000397397 CECR2Q9BXF3 1484 aa43.37■■■■■ 4.53
TSPAN4-203ENST00000397397 CC2D2AQ9P2K1 1620 aa43.31■■■■■ 4.52
TSPAN4-203ENST00000397397 BAZ1AQ9NRL2 1556 aaPredicted RBP43.17■■■■■ 4.5
TSPAN4-203ENST00000397397 SMARCA4P51532 1647 aa43.12■■■■■ 4.49
TSPAN4-203ENST00000397397 MROH2BQ7Z745 1585 aa43.02■■■■■ 4.48
TSPAN4-203ENST00000397397 RSF1Q96T23 1441 aaPredicted RBP42.8■■■■■ 4.44
TSPAN4-203ENST00000397397 ATAD2BQ9ULI0 1458 aa42.66■■■■■ 4.42
TSPAN4-203ENST00000397397 SMARCA2P51531 1590 aa42.65■■■■■ 4.42
TSPAN4-203ENST00000397397 PEG3Q9GZU2 1588 aa42.64■■■■■ 4.42
TSPAN4-203ENST00000397397 WIZO95785 1651 aa42.62■■■■■ 4.41
TSPAN4-203ENST00000397397 NCAPD3P42695 1498 aa42.49■■■■■ 4.39
TSPAN4-203ENST00000397397 SUPT5HO00267 1087 aaKnown RBP42.4■■■■■ 4.38
TSPAN4-203ENST00000397397 BAZ1BQ9UIG0 1483 aaKnown RBP42.38■■■■■ 4.38
TSPAN4-203ENST00000397397 HMGXB3Q12766 1538 aa42.37■■■■■ 4.37
TSPAN4-203ENST00000397397 TOP2AP11388 1531 aaKnown RBP42.18■■■■■ 4.34
TSPAN4-203ENST00000397397 CCDC88BA6NC98 1476 aa41.69■■■■■ 4.27
TSPAN4-203ENST00000397397 NESP48681 1621 aa41.43■■■■■ 4.22
TSPAN4-203ENST00000397397 CADPSQ9ULU8 1353 aa41.33■■■■■ 4.21
TSPAN4-203ENST00000397397 LAMC3Q9Y6N6 1575 aa41.27■■■■■ 4.2
TSPAN4-203ENST00000397397 ERCC6Q03468 1493 aa41.25■■■■■ 4.19
TSPAN4-203ENST00000397397 CFTRP13569 1480 aa41.24■■■■■ 4.19
TSPAN4-203ENST00000397397 PRDM2Q13029 1718 aa41.04■■■■■ 4.16
TSPAN4-203ENST00000397397 PDS5BQ9NTI5 1447 aa40.97■■■■■ 4.15
TSPAN4-203ENST00000397397 KIF21AQ7Z4S6 1674 aa40.91■■■■■ 4.14
TSPAN4-203ENST00000397397 CUX2O14529 1486 aa40.88■■■■■ 4.14
TSPAN4-203ENST00000397397 FANCD2Q9BXW9 1451 aa40.87■■■■■ 4.13
TSPAN4-203ENST00000397397 THOC2Q8NI27 1593 aaKnown RBP40.81■■■■■ 4.12
TSPAN4-203ENST00000397397 CEP164Q9UPV0 1460 aa40.74■■■■■ 4.11
TSPAN4-203ENST00000397397 MRC2Q9UBG0 1479 aa40.55■■■■■ 4.08
TSPAN4-203ENST00000397397 ABCC8Q09428 1581 aa40.45■■■■■ 4.07
TSPAN4-203ENST00000397397 WDR62O43379 1518 aa40.43■■■■■ 4.06
TSPAN4-203ENST00000397397 URB2Q14146 1524 aaKnown RBP40.4■■■■■ 4.06
TSPAN4-203ENST00000397397 WRNQ14191 1432 aaPredicted RBP eCLIP40.35■■■■■ 4.05
TSPAN4-203ENST00000397397 DNMBPQ6XZF7 1577 aa40.33■■■■■ 4.05
TSPAN4-203ENST00000397397 CUX1P39880 1505 aa40.31■■■■■ 4.04
TSPAN4-203ENST00000397397 TOPBP1Q92547 1522 aa40.31■■■■■ 4.04
TSPAN4-203ENST00000397397 SYNJ1O43426 1573 aa40.21■■■■■ 4.03
TSPAN4-203ENST00000397397 TOP2BQ02880 1626 aa40.17■■■■■ 4.02
TSPAN4-203ENST00000397397 BIVM-ERCC5R4GMW8 1640 aa40.16■■■■■ 4.02
TSPAN4-203ENST00000397397 FGD5Q6ZNL6 1462 aa40.05■■■■■ 4
TSPAN4-203ENST00000397397 CHIC1Q5VXU3 224 aa40.01■■■■■ 4
TSPAN4-203ENST00000397397 POLA1P09884 1462 aaPredicted RBP40.01■■■■■ 4
TSPAN4-203ENST00000397397 TRIM41Q8WV44 630 aa39.99■■■■□ 3.99
TSPAN4-203ENST00000397397 DNAJC5Q9H3Z4 198 aa39.92■■■■□ 3.98
TSPAN4-203ENST00000397397 SOGA1O94964 1423 aa39.88■■■■□ 3.97
TSPAN4-203ENST00000397397 RAD54L2Q9Y4B4 1467 aa39.85■■■■□ 3.97
TSPAN4-203ENST00000397397 IFT140Q96RY7 1462 aa39.84■■■■□ 3.97
TSPAN4-203ENST00000397397 TARBP1Q13395 1621 aaKnown RBP39.8■■■■□ 3.96
TSPAN4-203ENST00000397397 ABCA10Q8WWZ4 1543 aa39.68■■■■□ 3.94
TSPAN4-203ENST00000397397 WDR97A6NE52 1622 aa39.67■■■■□ 3.94
TSPAN4-203ENST00000397397 ZNF608Q9ULD9 1512 aaPredicted RBP39.62■■■■□ 3.93
TSPAN4-203ENST00000397397 TDRD9Q8NDG6 1382 aaKnown RBP39.56■■■■□ 3.92
TSPAN4-203ENST00000397397 AQRO60306 1485 aaKnown RBP eCLIP39.5■■■■□ 3.914e-8■■■■■ 31.9
TSPAN4-203ENST00000397397 EIF4G3O43432 1585 aaKnown RBP39.5■■■■□ 3.91
TSPAN4-203ENST00000397397 ABCA5Q8WWZ7 1642 aa39.45■■■■□ 3.91
TSPAN4-203ENST00000397397 KIF27Q86VH2 1401 aa39.44■■■■□ 3.9
TSPAN4-203ENST00000397397 GAPVD1Q14C86 1478 aa39.43■■■■□ 3.9
TSPAN4-203ENST00000397397 RUSC2Q8N2Y8 1516 aa39.36■■■■□ 3.89
TSPAN4-203ENST00000397397 PBRM1Q86U86 1689 aa39.32■■■■□ 3.89
TSPAN4-203ENST00000397397 GRIN2BQ13224 1484 aa39.31■■■■□ 3.88
TSPAN4-203ENST00000397397 ERICH3Q5RHP9 1530 aa39.21■■■■□ 3.87
TSPAN4-203ENST00000397397 EEA1Q15075 1411 aa39.21■■■■□ 3.87
TSPAN4-203ENST00000397397 FAM9AQ8IZU1 332 aaPredicted RBP39.19■■■■□ 3.86
TSPAN4-203ENST00000397397 IGF1RP08069 1367 aa39.17■■■■□ 3.86
TSPAN4-203ENST00000397397 SNAPC4Q5SXM2 1469 aa39.16■■■■□ 3.86
TSPAN4-203ENST00000397397 OSCARQ8IYS5 282 aa39.15■■■■□ 3.86
TSPAN4-203ENST00000397397 MAGI1Q96QZ7 1491 aaPredicted RBP39.1■■■■□ 3.85
TSPAN4-203ENST00000397397 CSRNP3Q8WYN3 585 aa39.06■■■■□ 3.84
TSPAN4-203ENST00000397397 CUL7Q14999 1698 aa39.04■■■■□ 3.84
TSPAN4-203ENST00000397397 ADAMTS12P58397 1594 aa39.03■■■■□ 3.84
TSPAN4-203ENST00000397397 FHAD1B1AJZ9 1412 aa38.99■■■■□ 3.83
TSPAN4-203ENST00000397397 CARMIL1Q5VZK9 1371 aa38.98■■■■□ 3.83
TSPAN4-203ENST00000397397 CHD1O14646 1710 aa38.97■■■■□ 3.83
TSPAN4-203ENST00000397397 SYNJ2O15056 1496 aa38.94■■■■□ 3.82
TSPAN4-203ENST00000397397 FBLN2P98095 1184 aa38.91■■■■□ 3.82
TSPAN4-203ENST00000397397 CHMP7Q8WUX9 453 aaPredicted RBP38.9■■■■□ 3.82
TSPAN4-203ENST00000397397 PRXQ9BXM0 1461 aa38.86■■■■□ 3.81
TSPAN4-203ENST00000397397 RAPGEF2Q9Y4G8 1499 aa38.83■■■■□ 3.81
TSPAN4-203ENST00000397397 GRIN2AQ12879 1464 aa38.79■■■■□ 3.8
TSPAN4-203ENST00000397397 KIF21BO75037 1637 aa38.76■■■■□ 3.8
TSPAN4-203ENST00000397397 EHMT2Q96KQ7 1210 aa38.65■■■■□ 3.78
TSPAN4-203ENST00000397397 RIMBP3CA6NJZ7 1639 aa38.62■■■■□ 3.77
TSPAN4-203ENST00000397397 RIMBP3BA6NNM3 1639 aa38.62■■■■□ 3.77
TSPAN4-203ENST00000397397 RIMBP3Q9UFD9 1639 aa38.62■■■■□ 3.77
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms