RNA–Protein interactions for RNA: ENST00000637572.1

CHD2-227, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 5

Gene CHD2, Length 4,452 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-227ENST00000637572 CHIC1Q5VXU3 224 aa11.91□□□□□ -0.5
CHD2-227ENST00000637572 AEBP2Q6ZN18 517 aaPredicted RBP11.69□□□□□ -0.54
CHD2-227ENST00000637572 NISCHQ9Y2I1 1504 aa10.86□□□□□ -0.67
CHD2-227ENST00000637572 PHF23Q9BUL5 403 aaPredicted RBP10.61□□□□□ -0.71
CHD2-227ENST00000637572 EHMT2Q96KQ7 1210 aa10.25□□□□□ -0.77
CHD2-227ENST00000637572 PLPPR3Q6T4P5 718 aa10.06□□□□□ -0.8
CHD2-227ENST00000637572 DCAF8L2P0C7V8 631 aa9.96□□□□□ -0.82
CHD2-227ENST00000637572 SENP3Q9H4L4 574 aaPredicted RBP9.76□□□□□ -0.85
CHD2-227ENST00000637572 KCNA4P22459 653 aa9.69□□□□□ -0.86
CHD2-227ENST00000637572 ADRA2BP18089 450 aa9.64□□□□□ -0.87
CHD2-227ENST00000637572 ABCC9O60706 1549 aa9.5□□□□□ -0.89
CHD2-227ENST00000637572 SHROOM4Q9ULL8 1493 aa9.38□□□□□ -0.91
CHD2-227ENST00000637572 SLC4A1APQ9BWU0 796 aaKnown RBP9.35□□□□□ -0.91
CHD2-227ENST00000637572 PPP6R1Q9UPN7 881 aa9.32□□□□□ -0.92
CHD2-227ENST00000637572 SUPT5HO00267 1087 aaKnown RBP9.31□□□□□ -0.92
CHD2-227ENST00000637572 CSRNP3Q8WYN3 585 aa9.3□□□□□ -0.92
CHD2-227ENST00000637572 CCDC180Q9P1Z9 1646 aa9.28□□□□□ -0.92
CHD2-227ENST00000637572 SLC24A1O60721 1099 aa9.19□□□□□ -0.94
CHD2-227ENST00000637572 PABPN1Q86U42 306 aaKnown RBP eCLIP9.17□□□□□ -0.94
CHD2-227ENST00000637572 FOXD1Q16676 465 aa9.07□□□□□ -0.96
CHD2-227ENST00000637572 ZCCHC6Q5VYS8 1495 aaKnown RBP9.04□□□□□ -0.96
CHD2-227ENST00000637572 PPP4R3CPQ6ZMV5 832 aa9.02□□□□□ -0.97
CHD2-227ENST00000637572 RTN4Q9NQC3 1192 aaKnown RBP9.01□□□□□ -0.97
CHD2-227ENST00000637572 TRIM41Q8WV44 630 aa9.01□□□□□ -0.97
CHD2-227ENST00000637572 DNAJC5BQ9UF47 199 aa8.98□□□□□ -0.97
CHD2-227ENST00000637572 PIAS4Q8N2W9 510 aaPredicted RBP8.93□□□□□ -0.98
CHD2-227ENST00000637572 NCBP3Q53F19 620 aaKnown RBP8.92□□□□□ -0.98
CHD2-227ENST00000637572 NACADO15069 1562 aa8.89□□□□□ -0.99
CHD2-227ENST00000637572 DCAF1Q9Y4B6 1507 aa8.89□□□□□ -0.99
CHD2-227ENST00000637572 RB1CC1Q8TDY2 1594 aa8.88□□□□□ -0.99
CHD2-227ENST00000637572 NPM3O75607 178 aaKnown RBP8.82□□□□□ -1
CHD2-227ENST00000637572 ZBTB22O15209 634 aa8.81□□□□□ -1
CHD2-227ENST00000637572 FAM9AQ8IZU1 332 aaPredicted RBP8.81□□□□□ -1
CHD2-227ENST00000637572 MYO15BQ96JP2 1530 aa8.77□□□□□ -1
CHD2-227ENST00000637572 SCRIBQ14160 1630 aa8.75□□□□□ -1.01
CHD2-227ENST00000637572 AMER1Q5JTC6 1135 aaPredicted RBP8.75□□□□□ -1.01
CHD2-227ENST00000637572 APLP2Q06481 763 aa8.72□□□□□ -1.01
CHD2-227ENST00000637572 TRHP20396 242 aaPredicted RBP8.69□□□□□ -1.02
CHD2-227ENST00000637572 DNAJC5Q9H3Z4 198 aa8.67□□□□□ -1.02
CHD2-227ENST00000637572 FKBP8Q14318 412 aa8.64□□□□□ -1.03
CHD2-227ENST00000637572 UBTFP17480 764 aaKnown RBP8.58□□□□□ -1.04
CHD2-227ENST00000637572 FOXD4L1Q9NU39 408 aa8.57□□□□□ -1.04
CHD2-227ENST00000637572 BAZ1AQ9NRL2 1556 aaPredicted RBP8.53□□□□□ -1.04
CHD2-227ENST00000637572 ERCC6Q03468 1493 aa8.5□□□□□ -1.05
CHD2-227ENST00000637572 RSF1Q96T23 1441 aaPredicted RBP8.5□□□□□ -1.05
CHD2-227ENST00000637572 CNKSR2Q8WXI2 1034 aa8.48□□□□□ -1.05
CHD2-227ENST00000637572 FBLN2P98095 1184 aa8.47□□□□□ -1.05
CHD2-227ENST00000637572 CECR2Q9BXF3 1484 aa8.45□□□□□ -1.06
CHD2-227ENST00000637572 SCAF1Q9H7N4 1312 aaKnown RBP8.45□□□□□ -1.06
CHD2-227ENST00000637572 BAZ1BQ9UIG0 1483 aaKnown RBP8.44□□□□□ -1.06
CHD2-227ENST00000637572 MAPK8IP2Q13387 824 aaPredicted RBP8.42□□□□□ -1.06
CHD2-227ENST00000637572 RANGAP1P46060 587 aaPredicted RBP8.41□□□□□ -1.06
CHD2-227ENST00000637572 ATP1B4Q9UN42 357 aaPredicted RBP8.4□□□□□ -1.06
CHD2-227ENST00000637572 SMARCA2P51531 1590 aa8.4□□□□□ -1.07
CHD2-227ENST00000637572 PRKCSHP14314 528 aaPredicted RBP8.35□□□□□ -1.07
CHD2-227ENST00000637572 HAP1P54257 671 aaPredicted RBP8.34□□□□□ -1.07
CHD2-227ENST00000637572 ZEB1P37275 1124 aaPredicted RBP8.32□□□□□ -1.08
CHD2-227ENST00000637572 MROH2BQ7Z745 1585 aa8.31□□□□□ -1.08
CHD2-227ENST00000637572 EEA1Q15075 1411 aa8.31□□□□□ -1.08
CHD2-227ENST00000637572 TTBK1Q5TCY1 1321 aaPredicted RBP8.3□□□□□ -1.08
CHD2-227ENST00000637572 PCGF6Q9BYE7 350 aa8.29□□□□□ -1.08
CHD2-227ENST00000637572 LOC105371045A0A1W2PR82 267 aa8.29□□□□□ -1.08
CHD2-227ENST00000637572 CYB5RLQ6IPT4 315 aa8.29□□□□□ -1.08
CHD2-227ENST00000637572 TRIM26Q12899 539 aaPredicted RBP8.27□□□□□ -1.09
CHD2-227ENST00000637572 TOP2AP11388 1531 aaKnown RBP8.27□□□□□ -1.09
CHD2-227ENST00000637572 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.26□□□□□ -1.09
CHD2-227ENST00000637572 HNRNPUL2Q1KMD3 747 aaKnown RBP8.26□□□□□ -1.09
CHD2-227ENST00000637572 WRNQ14191 1432 aaPredicted RBP eCLIP8.26□□□□□ -1.09
CHD2-227ENST00000637572 SMARCA4P51532 1647 aa8.26□□□□□ -1.09
CHD2-227ENST00000637572 ATAD2BQ9ULI0 1458 aa8.25□□□□□ -1.09
CHD2-227ENST00000637572 OSCARQ8IYS5 282 aa8.23□□□□□ -1.09
CHD2-227ENST00000637572 DCAF8L1A6NGE4 600 aa8.22□□□□□ -1.09
CHD2-227ENST00000637572 PDS5BQ9NTI5 1447 aa8.22□□□□□ -1.09
CHD2-227ENST00000637572 CCDC88BA6NC98 1476 aa8.21□□□□□ -1.09
CHD2-227ENST00000637572 CCER1Q8TC90 406 aaPredicted RBP8.2□□□□□ -1.1
CHD2-227ENST00000637572 KIF27Q86VH2 1401 aa8.19□□□□□ -1.1
CHD2-227ENST00000637572 NCAPD3P42695 1498 aa8.19□□□□□ -1.1
CHD2-227ENST00000637572 CADPSQ9ULU8 1353 aa8.18□□□□□ -1.1
CHD2-227ENST00000637572 CDK11AQ9UQ88 783 aaPredicted RBP8.17□□□□□ -1.1
CHD2-227ENST00000637572 WIZO95785 1651 aa8.16□□□□□ -1.1
CHD2-227ENST00000637572 NPM1P06748 294 aaKnown RBP eCLIP8.15□□□□□ -1.1
CHD2-227ENST00000637572 EIF4G1Q04637 1599 aaKnown RBP8.15□□□□□ -1.1
CHD2-227ENST00000637572 CHMP7Q8WUX9 453 aaPredicted RBP8.13□□□□□ -1.11
CHD2-227ENST00000637572 GOLGA3Q08378 1498 aa8.13□□□□□ -1.11
CHD2-227ENST00000637572 ABCC8Q09428 1581 aa8.12□□□□□ -1.11
CHD2-227ENST00000637572 CEP164Q9UPV0 1460 aa8.12□□□□□ -1.11
CHD2-227ENST00000637572 PLCB2Q00722 1185 aa8.11□□□□□ -1.11
CHD2-227ENST00000637572 SLC4A2P04920 1241 aa8.1□□□□□ -1.11
CHD2-227ENST00000637572 TPRNQ4KMQ1 711 aa8.1□□□□□ -1.11
CHD2-227ENST00000637572 MYT1LQ9UL68 1186 aa8.1□□□□□ -1.11
CHD2-227ENST00000637572 PPARGC1BQ86YN6 1023 aaKnown RBP8.1□□□□□ -1.11
CHD2-227ENST00000637572 HMGXB3Q12766 1538 aa8.09□□□□□ -1.11
CHD2-227ENST00000637572 MYCNP04198 464 aaPredicted RBP8.08□□□□□ -1.12
CHD2-227ENST00000637572 BICRAQ9NZM4 1560 aa8.07□□□□□ -1.12
CHD2-227ENST00000637572 BCANQ96GW7 911 aa8.07□□□□□ -1.12
CHD2-227ENST00000637572 RNF216Q9NWF9 866 aaPredicted RBP8.07□□□□□ -1.12
CHD2-227ENST00000637572 TNIKQ9UKE5 1360 aa8.07□□□□□ -1.12
CHD2-227ENST00000637572 ITGAEP38570 1179 aa8.06□□□□□ -1.12
CHD2-227ENST00000637572 CLIP1P30622 1438 aa8.06□□□□□ -1.12
CHD2-227ENST00000637572 FAM50AQ14320 339 aaKnown RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms