RNA–Protein interactions for RNA: ENST00000397404.5

TSPAN4-204, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,462 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-204ENST00000397404 NISCHQ9Y2I1 1504 aa43.86■■■■■ 4.61
TSPAN4-204ENST00000397404 CCDC180Q9P1Z9 1646 aa38.58■■■■□ 3.77
TSPAN4-204ENST00000397404 ZCCHC6Q5VYS8 1495 aaKnown RBP36.8■■■■□ 3.48
TSPAN4-204ENST00000397404 DCAF1Q9Y4B6 1507 aa36.5■■■■□ 3.43
TSPAN4-204ENST00000397404 ABCC9O60706 1549 aa36.41■■■■□ 3.42
TSPAN4-204ENST00000397404 MYO15BQ96JP2 1530 aa36.28■■■■□ 3.4
TSPAN4-204ENST00000397404 NACADO15069 1562 aa36.02■■■■□ 3.36
TSPAN4-204ENST00000397404 DCAF8L2P0C7V8 631 aa36■■■■□ 3.35
TSPAN4-204ENST00000397404 RB1CC1Q8TDY2 1594 aa35.74■■■■□ 3.31
TSPAN4-204ENST00000397404 SHROOM4Q9ULL8 1493 aa35.1■■■■□ 3.21
TSPAN4-204ENST00000397404 SCRIBQ14160 1630 aa35.09■■■■□ 3.21
TSPAN4-204ENST00000397404 UNC13AQ9UPW8 1703 aa34.77■■■■□ 3.16
TSPAN4-204ENST00000397404 BICRAQ9NZM4 1560 aa34.47■■■■□ 3.11
TSPAN4-204ENST00000397404 PABPN1Q86U42 306 aaKnown RBP eCLIP34.16■■■■□ 3.065e-10■■■□□ 17.3
TSPAN4-204ENST00000397404 BAZ1AQ9NRL2 1556 aaPredicted RBP33.99■■■■□ 3.03
TSPAN4-204ENST00000397404 CECR2Q9BXF3 1484 aa33.89■■■■□ 3.02
TSPAN4-204ENST00000397404 RSF1Q96T23 1441 aaPredicted RBP33.81■■■■□ 3
TSPAN4-204ENST00000397404 SMARCA4P51532 1647 aa33.78■■■■□ 3
TSPAN4-204ENST00000397404 MROH2BQ7Z745 1585 aa33.72■■■□□ 2.99
TSPAN4-204ENST00000397404 SUPT5HO00267 1087 aaKnown RBP33.69■■■□□ 2.98
TSPAN4-204ENST00000397404 PEG3Q9GZU2 1588 aa33.53■■■□□ 2.96
TSPAN4-204ENST00000397404 EIF4G1Q04637 1599 aaKnown RBP33.53■■■□□ 2.96
TSPAN4-204ENST00000397404 SMARCA2P51531 1590 aa33.43■■■□□ 2.94
TSPAN4-204ENST00000397404 WIZO95785 1651 aa33.4■■■□□ 2.94
TSPAN4-204ENST00000397404 ATAD2BQ9ULI0 1458 aa33.3■■■□□ 2.92
TSPAN4-204ENST00000397404 TOP2AP11388 1531 aaKnown RBP33.24■■■□□ 2.91
TSPAN4-204ENST00000397404 NCAPD3P42695 1498 aa33.18■■■□□ 2.9
TSPAN4-204ENST00000397404 HMGXB3Q12766 1538 aa33.15■■■□□ 2.9
TSPAN4-204ENST00000397404 BAZ1BQ9UIG0 1483 aaKnown RBP33.12■■■□□ 2.89
TSPAN4-204ENST00000397404 CC2D2AQ9P2K1 1620 aa33.06■■■□□ 2.88
TSPAN4-204ENST00000397404 CCDC88BA6NC98 1476 aa32.78■■■□□ 2.84
TSPAN4-204ENST00000397404 CFTRP13569 1480 aa32.31■■■□□ 2.76
TSPAN4-204ENST00000397404 CADPSQ9ULU8 1353 aa32.25■■■□□ 2.75
TSPAN4-204ENST00000397404 DNAJC5BQ9UF47 199 aa32.25■■■□□ 2.75
TSPAN4-204ENST00000397404 CHIC1Q5VXU3 224 aa32.2■■■□□ 2.75
TSPAN4-204ENST00000397404 PRDM2Q13029 1718 aa32.17■■■□□ 2.74
TSPAN4-204ENST00000397404 LAMC3Q9Y6N6 1575 aa32.14■■■□□ 2.74
TSPAN4-204ENST00000397404 TRIM41Q8WV44 630 aa31.91■■■□□ 2.7
TSPAN4-204ENST00000397404 PDS5BQ9NTI5 1447 aa31.9■■■□□ 2.7
TSPAN4-204ENST00000397404 WRNQ14191 1432 aaPredicted RBP eCLIP31.9■■■□□ 2.7
TSPAN4-204ENST00000397404 ABCC8Q09428 1581 aa31.83■■■□□ 2.69
TSPAN4-204ENST00000397404 FANCD2Q9BXW9 1451 aa31.83■■■□□ 2.69
TSPAN4-204ENST00000397404 NESP48681 1621 aa31.81■■■□□ 2.68
TSPAN4-204ENST00000397404 TOP2BQ02880 1626 aa31.72■■■□□ 2.67
TSPAN4-204ENST00000397404 CEP164Q9UPV0 1460 aa31.72■■■□□ 2.67
TSPAN4-204ENST00000397404 BIVM-ERCC5R4GMW8 1640 aa31.7■■■□□ 2.67
TSPAN4-204ENST00000397404 SYNJ1O43426 1573 aa31.65■■■□□ 2.66
TSPAN4-204ENST00000397404 CUX1P39880 1505 aa31.59■■■□□ 2.65
TSPAN4-204ENST00000397404 DNMBPQ6XZF7 1577 aa31.56■■■□□ 2.64
TSPAN4-204ENST00000397404 KIF21AQ7Z4S6 1674 aa31.53■■■□□ 2.64
TSPAN4-204ENST00000397404 EEA1Q15075 1411 aa31.47■■■□□ 2.63
TSPAN4-204ENST00000397404 TOPBP1Q92547 1522 aa31.44■■■□□ 2.62
TSPAN4-204ENST00000397404 MRC2Q9UBG0 1479 aa31.43■■■□□ 2.62
TSPAN4-204ENST00000397404 ERCC6Q03468 1493 aa31.41■■■□□ 2.62
TSPAN4-204ENST00000397404 URB2Q14146 1524 aaKnown RBP31.38■■■□□ 2.61
TSPAN4-204ENST00000397404 FGD5Q6ZNL6 1462 aa31.32■■■□□ 2.6
TSPAN4-204ENST00000397404 WDR62O43379 1518 aa31.3■■■□□ 2.6
TSPAN4-204ENST00000397404 POLA1P09884 1462 aaPredicted RBP31.26■■■□□ 2.59
TSPAN4-204ENST00000397404 THOC2Q8NI27 1593 aaKnown RBP31.2■■■□□ 2.58
TSPAN4-204ENST00000397404 SOGA1O94964 1423 aa31.19■■■□□ 2.58
TSPAN4-204ENST00000397404 KIF27Q86VH2 1401 aa31.19■■■□□ 2.58
TSPAN4-204ENST00000397404 ABCA10Q8WWZ4 1543 aa31.17■■■□□ 2.58
TSPAN4-204ENST00000397404 CSRNP3Q8WYN3 585 aa31.09■■■□□ 2.57
TSPAN4-204ENST00000397404 WDR97A6NE52 1622 aa31.06■■■□□ 2.56
TSPAN4-204ENST00000397404 CUX2O14529 1486 aa31.05■■■□□ 2.56
TSPAN4-204ENST00000397404 IFT140Q96RY7 1462 aa31.05■■■□□ 2.56
TSPAN4-204ENST00000397404 FAM9AQ8IZU1 332 aaPredicted RBP31.02■■■□□ 2.56
TSPAN4-204ENST00000397404 RAD54L2Q9Y4B4 1467 aa31.01■■■□□ 2.55
TSPAN4-204ENST00000397404 TARBP1Q13395 1621 aaKnown RBP31.01■■■□□ 2.55
TSPAN4-204ENST00000397404 RUSC2Q8N2Y8 1516 aa31■■■□□ 2.55
TSPAN4-204ENST00000397404 KIF21BO75037 1637 aa30.93■■■□□ 2.54
TSPAN4-204ENST00000397404 ABCA5Q8WWZ7 1642 aa30.89■■■□□ 2.54
TSPAN4-204ENST00000397404 ERICH3Q5RHP9 1530 aa30.86■■■□□ 2.53
TSPAN4-204ENST00000397404 GOLGA3Q08378 1498 aa30.84■■■□□ 2.53
TSPAN4-204ENST00000397404 GAPVD1Q14C86 1478 aa30.84■■■□□ 2.53
TSPAN4-204ENST00000397404 PRXQ9BXM0 1461 aa30.84■■■□□ 2.53
TSPAN4-204ENST00000397404 IGF1RP08069 1367 aa30.84■■■□□ 2.53
TSPAN4-204ENST00000397404 CUL7Q14999 1698 aa30.79■■■□□ 2.52
TSPAN4-204ENST00000397404 TDRD9Q8NDG6 1382 aaKnown RBP30.76■■■□□ 2.51
TSPAN4-204ENST00000397404 LOC105371045A0A1W2PR82 267 aa30.75■■■□□ 2.51
TSPAN4-204ENST00000397404 GRIN2BQ13224 1484 aa30.71■■■□□ 2.51
TSPAN4-204ENST00000397404 CARMIL1Q5VZK9 1371 aa30.71■■■□□ 2.51
TSPAN4-204ENST00000397404 TNIKQ9UKE5 1360 aa30.69■■■□□ 2.5
TSPAN4-204ENST00000397404 RAPGEF2Q9Y4G8 1499 aa30.69■■■□□ 2.5
TSPAN4-204ENST00000397404 PBRM1Q86U86 1689 aa30.66■■■□□ 2.5
TSPAN4-204ENST00000397404 EIF4G3O43432 1585 aaKnown RBP30.64■■■□□ 2.49
TSPAN4-204ENST00000397404 ZNF608Q9ULD9 1512 aaPredicted RBP30.62■■■□□ 2.49
TSPAN4-204ENST00000397404 AQRO60306 1485 aaKnown RBP eCLIP30.62■■■□□ 2.494e-8■■■■■ 31.9
TSPAN4-204ENST00000397404 UBTFP17480 764 aaKnown RBP30.58■■■□□ 2.49
TSPAN4-204ENST00000397404 FHAD1B1AJZ9 1412 aa30.57■■■□□ 2.48
TSPAN4-204ENST00000397404 MAGI1Q96QZ7 1491 aaPredicted RBP30.55■■■□□ 2.48
TSPAN4-204ENST00000397404 ADAMTS12P58397 1594 aa30.5■■■□□ 2.47
TSPAN4-204ENST00000397404 SNAPC4Q5SXM2 1469 aa30.42■■■□□ 2.46
TSPAN4-204ENST00000397404 EHMT2Q96KQ7 1210 aa30.39■■■□□ 2.46
TSPAN4-204ENST00000397404 CEP162Q5TB80 1403 aa30.39■■■□□ 2.46
TSPAN4-204ENST00000397404 SYNJ2O15056 1496 aa30.37■■■□□ 2.45
TSPAN4-204ENST00000397404 CTTNBP2Q8WZ74 1663 aa30.3■■■□□ 2.44
TSPAN4-204ENST00000397404 GRIN2AQ12879 1464 aa30.28■■■□□ 2.44
TSPAN4-204ENST00000397404 CLIP1P30622 1438 aa30.27■■■□□ 2.44
TSPAN4-204ENST00000397404 CHMP7Q8WUX9 453 aaPredicted RBP30.24■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms