RNA–Protein interactions for RNA: ENST00000397406.5

TSPAN4-205, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSPAN4, Length 1,426 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-205ENST00000397406 NISCHQ9Y2I1 1504 aa39.89■■■■□ 3.98
TSPAN4-205ENST00000397406 CCDC180Q9P1Z9 1646 aa35.52■■■■□ 3.28
TSPAN4-205ENST00000397406 ABCC9O60706 1549 aa35.36■■■■□ 3.25
TSPAN4-205ENST00000397406 RB1CC1Q8TDY2 1594 aa33.67■■■□□ 2.98
TSPAN4-205ENST00000397406 NACADO15069 1562 aa33.55■■■□□ 2.96
TSPAN4-205ENST00000397406 DCAF8L2P0C7V8 631 aa33.47■■■□□ 2.95
TSPAN4-205ENST00000397406 MYO15BQ96JP2 1530 aa33.22■■■□□ 2.91
TSPAN4-205ENST00000397406 ZCCHC6Q5VYS8 1495 aaKnown RBP33.17■■■□□ 2.9
TSPAN4-205ENST00000397406 DNAJC5BQ9UF47 199 aa33.07■■■□□ 2.88
TSPAN4-205ENST00000397406 PABPN1Q86U42 306 aaKnown RBP eCLIP33.02■■■□□ 2.885e-10■■■□□ 17.3
TSPAN4-205ENST00000397406 UNC13AQ9UPW8 1703 aa32.95■■■□□ 2.87
TSPAN4-205ENST00000397406 DCAF1Q9Y4B6 1507 aa32.93■■■□□ 2.86
TSPAN4-205ENST00000397406 BICRAQ9NZM4 1560 aa32.85■■■□□ 2.85
TSPAN4-205ENST00000397406 SCRIBQ14160 1630 aa32.48■■■□□ 2.79
TSPAN4-205ENST00000397406 SHROOM4Q9ULL8 1493 aa32.27■■■□□ 2.76
TSPAN4-205ENST00000397406 EIF4G1Q04637 1599 aaKnown RBP31.93■■■□□ 2.7
TSPAN4-205ENST00000397406 CC2D2AQ9P2K1 1620 aa31.92■■■□□ 2.7
TSPAN4-205ENST00000397406 CECR2Q9BXF3 1484 aa31.79■■■□□ 2.68
TSPAN4-205ENST00000397406 NCAPD3P42695 1498 aa31.05■■■□□ 2.56
TSPAN4-205ENST00000397406 ATAD2BQ9ULI0 1458 aa31.02■■■□□ 2.56
TSPAN4-205ENST00000397406 SMARCA4P51532 1647 aa31.01■■■□□ 2.55
TSPAN4-205ENST00000397406 BAZ1AQ9NRL2 1556 aaPredicted RBP30.86■■■□□ 2.53
TSPAN4-205ENST00000397406 SMARCA2P51531 1590 aa30.83■■■□□ 2.53
TSPAN4-205ENST00000397406 MROH2BQ7Z745 1585 aa30.79■■■□□ 2.52
TSPAN4-205ENST00000397406 HMGXB3Q12766 1538 aa30.79■■■□□ 2.52
TSPAN4-205ENST00000397406 PEG3Q9GZU2 1588 aa30.73■■■□□ 2.51
TSPAN4-205ENST00000397406 BAZ1BQ9UIG0 1483 aaKnown RBP30.66■■■□□ 2.5
TSPAN4-205ENST00000397406 NESP48681 1621 aa30.52■■■□□ 2.48
TSPAN4-205ENST00000397406 RSF1Q96T23 1441 aaPredicted RBP30.48■■■□□ 2.47
TSPAN4-205ENST00000397406 ERCC6Q03468 1493 aa30.39■■■□□ 2.46
TSPAN4-205ENST00000397406 WIZO95785 1651 aa30.38■■■□□ 2.45
TSPAN4-205ENST00000397406 SUPT5HO00267 1087 aaKnown RBP30.31■■■□□ 2.44
TSPAN4-205ENST00000397406 CUX2O14529 1486 aa30.26■■■□□ 2.44
TSPAN4-205ENST00000397406 LAMC3Q9Y6N6 1575 aa30.2■■■□□ 2.43
TSPAN4-205ENST00000397406 CADPSQ9ULU8 1353 aa30.12■■■□□ 2.41
TSPAN4-205ENST00000397406 THOC2Q8NI27 1593 aaKnown RBP30.07■■■□□ 2.4
TSPAN4-205ENST00000397406 PDS5BQ9NTI5 1447 aa30.03■■■□□ 2.4
TSPAN4-205ENST00000397406 KIF21AQ7Z4S6 1674 aa30.01■■■□□ 2.4
TSPAN4-205ENST00000397406 TOP2AP11388 1531 aaKnown RBP29.99■■■□□ 2.39
TSPAN4-205ENST00000397406 DNAJC5Q9H3Z4 198 aa29.98■■■□□ 2.39
TSPAN4-205ENST00000397406 CFTRP13569 1480 aa29.85■■■□□ 2.37
TSPAN4-205ENST00000397406 MRC2Q9UBG0 1479 aa29.79■■■□□ 2.36
TSPAN4-205ENST00000397406 FANCD2Q9BXW9 1451 aa29.75■■■□□ 2.35
TSPAN4-205ENST00000397406 WDR62O43379 1518 aa29.73■■■□□ 2.35
TSPAN4-205ENST00000397406 CCDC88BA6NC98 1476 aa29.71■■■□□ 2.35
TSPAN4-205ENST00000397406 CEP164Q9UPV0 1460 aa29.71■■■□□ 2.35
TSPAN4-205ENST00000397406 URB2Q14146 1524 aaKnown RBP29.56■■■□□ 2.32
TSPAN4-205ENST00000397406 PRDM2Q13029 1718 aa29.39■■■□□ 2.3
TSPAN4-205ENST00000397406 TOPBP1Q92547 1522 aa29.24■■■□□ 2.27
TSPAN4-205ENST00000397406 ZNF608Q9ULD9 1512 aaPredicted RBP29.16■■■□□ 2.26
TSPAN4-205ENST00000397406 IFT140Q96RY7 1462 aa29.12■■■□□ 2.25
TSPAN4-205ENST00000397406 DNMBPQ6XZF7 1577 aa29.11■■■□□ 2.25
TSPAN4-205ENST00000397406 ABCC8Q09428 1581 aa29.08■■■□□ 2.25
TSPAN4-205ENST00000397406 POLA1P09884 1462 aaPredicted RBP28.98■■■□□ 2.23
TSPAN4-205ENST00000397406 TARBP1Q13395 1621 aaKnown RBP28.97■■■□□ 2.23
TSPAN4-205ENST00000397406 OSCARQ8IYS5 282 aa28.95■■■□□ 2.23
TSPAN4-205ENST00000397406 AQRO60306 1485 aaKnown RBP eCLIP28.91■■■□□ 2.224e-8■■■■■ 31.9
TSPAN4-205ENST00000397406 RAD54L2Q9Y4B4 1467 aa28.91■■■□□ 2.22
TSPAN4-205ENST00000397406 EIF4G3O43432 1585 aaKnown RBP28.9■■■□□ 2.22
TSPAN4-205ENST00000397406 CUX1P39880 1505 aa28.9■■■□□ 2.22
TSPAN4-205ENST00000397406 CHIC1Q5VXU3 224 aa28.83■■■□□ 2.21
TSPAN4-205ENST00000397406 FGD5Q6ZNL6 1462 aa28.83■■■□□ 2.2
TSPAN4-205ENST00000397406 SOGA1O94964 1423 aa28.82■■■□□ 2.2
TSPAN4-205ENST00000397406 TDRD9Q8NDG6 1382 aaKnown RBP28.78■■■□□ 2.2
TSPAN4-205ENST00000397406 TRIM41Q8WV44 630 aa28.75■■■□□ 2.19
TSPAN4-205ENST00000397406 WRNQ14191 1432 aaPredicted RBP eCLIP28.69■■■□□ 2.18
TSPAN4-205ENST00000397406 SYNJ1O43426 1573 aa28.65■■■□□ 2.18
TSPAN4-205ENST00000397406 BIVM-ERCC5R4GMW8 1640 aa28.61■■■□□ 2.17
TSPAN4-205ENST00000397406 TOP2BQ02880 1626 aa28.59■■■□□ 2.17
TSPAN4-205ENST00000397406 CHD1O14646 1710 aa28.59■■■□□ 2.17
TSPAN4-205ENST00000397406 SNAPC4Q5SXM2 1469 aa28.58■■■□□ 2.17
TSPAN4-205ENST00000397406 WDR97A6NE52 1622 aa28.57■■■□□ 2.16
TSPAN4-205ENST00000397406 RIMBP3CA6NJZ7 1639 aa28.56■■■□□ 2.16
TSPAN4-205ENST00000397406 RIMBP3BA6NNM3 1639 aa28.56■■■□□ 2.16
TSPAN4-205ENST00000397406 RIMBP3Q9UFD9 1639 aa28.56■■■□□ 2.16
TSPAN4-205ENST00000397406 FBLN2P98095 1184 aa28.55■■■□□ 2.16
TSPAN4-205ENST00000397406 ARHGEF11O15085 1522 aa28.52■■■□□ 2.16
TSPAN4-205ENST00000397406 ABCA10Q8WWZ4 1543 aa28.52■■■□□ 2.16
TSPAN4-205ENST00000397406 GRIN2BQ13224 1484 aa28.51■■■□□ 2.15
TSPAN4-205ENST00000397406 GAPVD1Q14C86 1478 aa28.46■■■□□ 2.15
TSPAN4-205ENST00000397406 MAGI1Q96QZ7 1491 aaPredicted RBP28.46■■■□□ 2.15
TSPAN4-205ENST00000397406 ABCA5Q8WWZ7 1642 aa28.43■■■□□ 2.14
TSPAN4-205ENST00000397406 CHMP7Q8WUX9 453 aaPredicted RBP28.39■■■□□ 2.14
TSPAN4-205ENST00000397406 SYNJ2O15056 1496 aa28.38■■■□□ 2.13
TSPAN4-205ENST00000397406 PBRM1Q86U86 1689 aa28.36■■■□□ 2.13
TSPAN4-205ENST00000397406 CLASP1Q7Z460 1538 aa28.36■■■□□ 2.13
TSPAN4-205ENST00000397406 ARAP1Q96P48 1450 aa28.31■■■□□ 2.12
TSPAN4-205ENST00000397406 CYB5RLQ6IPT4 315 aa28.29■■■□□ 2.12
TSPAN4-205ENST00000397406 ADAMTS12P58397 1594 aa28.18■■■□□ 2.1
TSPAN4-205ENST00000397406 GRIN2AQ12879 1464 aa28.17■■■□□ 2.1
TSPAN4-205ENST00000397406 FHAD1B1AJZ9 1412 aa28.12■■■□□ 2.09
TSPAN4-205ENST00000397406 ERICH3Q5RHP9 1530 aa28.11■■■□□ 2.09
TSPAN4-205ENST00000397406 NUP160Q12769 1436 aa28.1■■■□□ 2.09
TSPAN4-205ENST00000397406 RUSC2Q8N2Y8 1516 aa28.1■■■□□ 2.09
TSPAN4-205ENST00000397406 CEP170Q5SW79 1584 aa28.08■■■□□ 2.09
TSPAN4-205ENST00000397406 EEA1Q15075 1411 aa28.05■■■□□ 2.08
TSPAN4-205ENST00000397406 ERCC6L2Q5T890 1561 aa28.02■■■□□ 2.08
TSPAN4-205ENST00000397406 KIF27Q86VH2 1401 aa28■■■□□ 2.07
TSPAN4-205ENST00000397406 FAM9AQ8IZU1 332 aaPredicted RBP27.98■■■□□ 2.07
TSPAN4-205ENST00000397406 IGF1RP08069 1367 aa27.94■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms