RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-223ENST00000584760 NISCHQ9Y2I1 1504 aa32.87■■■□□ 2.85
SREBF1-223ENST00000584760 ABCC9O60706 1549 aa29.65■■■□□ 2.34
SREBF1-223ENST00000584760 CCDC180Q9P1Z9 1646 aa29.4■■■□□ 2.3
SREBF1-223ENST00000584760 DNAJC5BQ9UF47 199 aa28.17■■■□□ 2.1
SREBF1-223ENST00000584760 RB1CC1Q8TDY2 1594 aa27.98■■■□□ 2.07
SREBF1-223ENST00000584760 DCAF8L2P0C7V8 631 aa27.71■■■□□ 2.03
SREBF1-223ENST00000584760 NACADO15069 1562 aa27.69■■■□□ 2.02
SREBF1-223ENST00000584760 PABPN1Q86U42 306 aaKnown RBP eCLIP27.62■■■□□ 2.01
SREBF1-223ENST00000584760 MYO15BQ96JP2 1530 aa27.41■■□□□ 1.98
SREBF1-223ENST00000584760 ZCCHC6Q5VYS8 1495 aaKnown RBP27.38■■□□□ 1.97
SREBF1-223ENST00000584760 UNC13AQ9UPW8 1703 aa27.26■■□□□ 1.95
SREBF1-223ENST00000584760 DCAF1Q9Y4B6 1507 aa27.22■■□□□ 1.95
SREBF1-223ENST00000584760 BICRAQ9NZM4 1560 aa27.18■■□□□ 1.94
SREBF1-223ENST00000584760 SCRIBQ14160 1630 aa26.75■■□□□ 1.87
SREBF1-223ENST00000584760 CECR2Q9BXF3 1484 aa26.72■■□□□ 1.87
SREBF1-223ENST00000584760 SHROOM4Q9ULL8 1493 aa26.71■■□□□ 1.87
SREBF1-223ENST00000584760 CC2D2AQ9P2K1 1620 aa26.68■■□□□ 1.86
SREBF1-223ENST00000584760 EIF4G1Q04637 1599 aaKnown RBP26.54■■□□□ 1.84
SREBF1-223ENST00000584760 DNAJC5Q9H3Z4 198 aa26.09■■□□□ 1.77
SREBF1-223ENST00000584760 CUX2O14529 1486 aa25.61■■□□□ 1.69
SREBF1-223ENST00000584760 NCAPD3P42695 1498 aa25.61■■□□□ 1.69
SREBF1-223ENST00000584760 ERCC6Q03468 1493 aa25.61■■□□□ 1.69
SREBF1-223ENST00000584760 SMARCA4P51532 1647 aa25.59■■□□□ 1.69
SREBF1-223ENST00000584760 BAZ1AQ9NRL2 1556 aaPredicted RBP25.5■■□□□ 1.67
SREBF1-223ENST00000584760 ATAD2BQ9ULI0 1458 aa25.49■■□□□ 1.67
SREBF1-223ENST00000584760 SMARCA2P51531 1590 aa25.41■■□□□ 1.66
SREBF1-223ENST00000584760 HMGXB3Q12766 1538 aa25.37■■□□□ 1.65
SREBF1-223ENST00000584760 NESP48681 1621 aa25.36■■□□□ 1.65
SREBF1-223ENST00000584760 PEG3Q9GZU2 1588 aa25.35■■□□□ 1.65
SREBF1-223ENST00000584760 MROH2BQ7Z745 1585 aa25.33■■□□□ 1.65
SREBF1-223ENST00000584760 BAZ1BQ9UIG0 1483 aaKnown RBP25.23■■□□□ 1.63
SREBF1-223ENST00000584760 WIZO95785 1651 aa25.08■■□□□ 1.61
SREBF1-223ENST00000584760 THOC2Q8NI27 1593 aaKnown RBP25.07■■□□□ 1.6
SREBF1-223ENST00000584760 LAMC3Q9Y6N6 1575 aa25.04■■□□□ 1.6
SREBF1-223ENST00000584760 PDS5BQ9NTI5 1447 aa24.97■■□□□ 1.59
SREBF1-223ENST00000584760 RSF1Q96T23 1441 aaPredicted RBP24.95■■□□□ 1.58
SREBF1-223ENST00000584760 KIF21AQ7Z4S6 1674 aa24.93■■□□□ 1.58
SREBF1-223ENST00000584760 TRIM41Q8WV44 630 aa24.87■■□□□ 1.57
SREBF1-223ENST00000584760 CADPSQ9ULU8 1353 aa24.84■■□□□ 1.57
SREBF1-223ENST00000584760 TOP2AP11388 1531 aaKnown RBP24.8■■□□□ 1.56
SREBF1-223ENST00000584760 MRC2Q9UBG0 1479 aa24.76■■□□□ 1.55
SREBF1-223ENST00000584760 WDR62O43379 1518 aa24.67■■□□□ 1.54
SREBF1-223ENST00000584760 CEP164Q9UPV0 1460 aa24.59■■□□□ 1.53
SREBF1-223ENST00000584760 FANCD2Q9BXW9 1451 aa24.56■■□□□ 1.52
SREBF1-223ENST00000584760 CFTRP13569 1480 aa24.51■■□□□ 1.51
SREBF1-223ENST00000584760 OSCARQ8IYS5 282 aa24.5■■□□□ 1.51
SREBF1-223ENST00000584760 PRDM2Q13029 1718 aa24.47■■□□□ 1.51
SREBF1-223ENST00000584760 CCDC88BA6NC98 1476 aa24.45■■□□□ 1.5
SREBF1-223ENST00000584760 URB2Q14146 1524 aaKnown RBP24.36■■□□□ 1.49
SREBF1-223ENST00000584760 ZNF608Q9ULD9 1512 aaPredicted RBP24.15■■□□□ 1.46
SREBF1-223ENST00000584760 IFT140Q96RY7 1462 aa24.12■■□□□ 1.45
SREBF1-223ENST00000584760 RIMBP3CA6NJZ7 1639 aa24.11■■□□□ 1.45
SREBF1-223ENST00000584760 RIMBP3BA6NNM3 1639 aa24.11■■□□□ 1.45
SREBF1-223ENST00000584760 RIMBP3Q9UFD9 1639 aa24.11■■□□□ 1.45
SREBF1-223ENST00000584760 SUPT5HO00267 1087 aaKnown RBP24.04■■□□□ 1.44
SREBF1-223ENST00000584760 TOPBP1Q92547 1522 aa24.04■■□□□ 1.44
SREBF1-223ENST00000584760 ARHGEF11O15085 1522 aa24.02■■□□□ 1.44
SREBF1-223ENST00000584760 DNMBPQ6XZF7 1577 aa24■■□□□ 1.43
SREBF1-223ENST00000584760 CYB5RLQ6IPT4 315 aa23.98■■□□□ 1.43
SREBF1-223ENST00000584760 ABCC8Q09428 1581 aa23.97■■□□□ 1.43
SREBF1-223ENST00000584760 EIF4G3O43432 1585 aaKnown RBP23.92■■□□□ 1.42
SREBF1-223ENST00000584760 AQRO60306 1485 aaKnown RBP eCLIP23.91■■□□□ 1.423e-11■■■■■ 30.9
SREBF1-223ENST00000584760 FBLN2P98095 1184 aa23.9■■□□□ 1.42
SREBF1-223ENST00000584760 TRHP20396 242 aaPredicted RBP23.85■■□□□ 1.41
SREBF1-223ENST00000584760 TARBP1Q13395 1621 aaKnown RBP23.81■■□□□ 1.4
SREBF1-223ENST00000584760 POLA1P09884 1462 aaPredicted RBP23.8■■□□□ 1.4
SREBF1-223ENST00000584760 CUX1P39880 1505 aa23.79■■□□□ 1.4
SREBF1-223ENST00000584760 CHD1O14646 1710 aa23.79■■□□□ 1.4
SREBF1-223ENST00000584760 ARAP1Q96P48 1450 aa23.77■■□□□ 1.4
SREBF1-223ENST00000584760 TDRD9Q8NDG6 1382 aaKnown RBP23.74■■□□□ 1.39
SREBF1-223ENST00000584760 RAD54L2Q9Y4B4 1467 aa23.74■■□□□ 1.39
SREBF1-223ENST00000584760 FGD5Q6ZNL6 1462 aa23.72■■□□□ 1.39
SREBF1-223ENST00000584760 SOGA1O94964 1423 aa23.71■■□□□ 1.39
SREBF1-223ENST00000584760 WDR97A6NE52 1622 aa23.65■■□□□ 1.38
SREBF1-223ENST00000584760 CHMP7Q8WUX9 453 aaPredicted RBP23.63■■□□□ 1.37
SREBF1-223ENST00000584760 SNAPC4Q5SXM2 1469 aa23.62■■□□□ 1.37
SREBF1-223ENST00000584760 BIVM-ERCC5R4GMW8 1640 aa23.59■■□□□ 1.37
SREBF1-223ENST00000584760 TOP2BQ02880 1626 aa23.55■■□□□ 1.36
SREBF1-223ENST00000584760 SYNJ1O43426 1573 aa23.55■■□□□ 1.36
SREBF1-223ENST00000584760 CLASP1Q7Z460 1538 aa23.53■■□□□ 1.36
SREBF1-223ENST00000584760 WRNQ14191 1432 aaPredicted RBP eCLIP23.51■■□□□ 1.35
SREBF1-223ENST00000584760 GRIN2BQ13224 1484 aa23.5■■□□□ 1.35
SREBF1-223ENST00000584760 MAGI1Q96QZ7 1491 aaPredicted RBP23.5■■□□□ 1.35
SREBF1-223ENST00000584760 ABCA10Q8WWZ4 1543 aa23.48■■□□□ 1.35
SREBF1-223ENST00000584760 PBRM1Q86U86 1689 aa23.48■■□□□ 1.35
SREBF1-223ENST00000584760 ABCA5Q8WWZ7 1642 aa23.47■■□□□ 1.35
SREBF1-223ENST00000584760 SYNJ2O15056 1496 aa23.45■■□□□ 1.34
SREBF1-223ENST00000584760 AEBP2Q6ZN18 517 aaPredicted RBP23.4■■□□□ 1.34
SREBF1-223ENST00000584760 GAPVD1Q14C86 1478 aa23.39■■□□□ 1.34
SREBF1-223ENST00000584760 ADAMTS12P58397 1594 aa23.25■■□□□ 1.31
SREBF1-223ENST00000584760 ERICH3Q5RHP9 1530 aa23.21■■□□□ 1.31
SREBF1-223ENST00000584760 ERCC6L2Q5T890 1561 aa23.19■■□□□ 1.3
SREBF1-223ENST00000584760 GRIN2AQ12879 1464 aa23.18■■□□□ 1.3
SREBF1-223ENST00000584760 FHAD1B1AJZ9 1412 aa23.11■■□□□ 1.29
SREBF1-223ENST00000584760 NUP160Q12769 1436 aa23.11■■□□□ 1.29
SREBF1-223ENST00000584760 CEP170Q5SW79 1584 aa23.1■■□□□ 1.29
SREBF1-223ENST00000584760 KIF27Q86VH2 1401 aa23.02■■□□□ 1.28
SREBF1-223ENST00000584760 CUL7Q14999 1698 aa23■■□□□ 1.27
SREBF1-223ENST00000584760 SHROOM2Q13796 1616 aa23■■□□□ 1.27
SREBF1-223ENST00000584760 PRG4Q92954 1404 aaPredicted RBP22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms