RNA–Protein interactions for RNA: ENST00000635856.1

CHD2-221, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 5

Gene CHD2, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-221ENST00000635856 PELP1Q8IZL8 1130 aaKnown RBP11.05□□□□□ -0.64
CHD2-221ENST00000635856 MYT1Q01538 1121 aa10.97□□□□□ -0.65
CHD2-221ENST00000635856 TTBK1Q5TCY1 1321 aaPredicted RBP10.42□□□□□ -0.74
CHD2-221ENST00000635856 ERICH6Q7L0X2 663 aa10.06□□□□□ -0.8
CHD2-221ENST00000635856 HRCP23327 699 aa10.04□□□□□ -0.8
CHD2-221ENST00000635856 NISCHQ9Y2I1 1504 aa9.99□□□□□ -0.81
CHD2-221ENST00000635856 PRKCSHP14314 528 aaPredicted RBP9.83□□□□□ -0.84
CHD2-221ENST00000635856 CENPBP07199 599 aaPredicted RBP9.78□□□□□ -0.84
CHD2-221ENST00000635856 BCL11AQ9H165 835 aa9.76□□□□□ -0.85
CHD2-221ENST00000635856 SCAF1Q9H7N4 1312 aaKnown RBP9.75□□□□□ -0.85
CHD2-221ENST00000635856 SLC24A1O60721 1099 aa9.69□□□□□ -0.86
CHD2-221ENST00000635856 PPARGC1BQ86YN6 1023 aaKnown RBP9.68□□□□□ -0.86
CHD2-221ENST00000635856 PCGF6Q9BYE7 350 aa9.61□□□□□ -0.87
CHD2-221ENST00000635856 APLP2Q06481 763 aa9.58□□□□□ -0.88
CHD2-221ENST00000635856 FAM9AQ8IZU1 332 aaPredicted RBP9.52□□□□□ -0.89
CHD2-221ENST00000635856 ZEB1P37275 1124 aaPredicted RBP9.51□□□□□ -0.89
CHD2-221ENST00000635856 ACIN1Q9UKV3 1341 aaKnown RBP9.49□□□□□ -0.89
CHD2-221ENST00000635856 GTF3C3Q9Y5Q9 886 aa9.48□□□□□ -0.89
CHD2-221ENST00000635856 ANP32EQ9BTT0 268 aa9.38□□□□□ -0.91
CHD2-221ENST00000635856 EIF5BO60841 1220 aaKnown RBP9.33□□□□□ -0.92
CHD2-221ENST00000635856 NEUROD1Q13562 356 aa9.32□□□□□ -0.92
CHD2-221ENST00000635856 DAXXQ9UER7 740 aaPredicted RBP9.3□□□□□ -0.92
CHD2-221ENST00000635856 CSRNP3Q8WYN3 585 aa9.18□□□□□ -0.94
CHD2-221ENST00000635856 TRIM26Q12899 539 aaPredicted RBP9.15□□□□□ -0.94
CHD2-221ENST00000635856 DCAF8L2P0C7V8 631 aa9.14□□□□□ -0.95
CHD2-221ENST00000635856 MYT1LQ9UL68 1186 aa9.08□□□□□ -0.96
CHD2-221ENST00000635856 YTHDC1Q96MU7 727 aaKnown RBP9.06□□□□□ -0.96
CHD2-221ENST00000635856 DIEXFQ68CQ4 756 aaKnown RBP9.05□□□□□ -0.96
CHD2-221ENST00000635856 UBE2Q2Q8WVN8 375 aa9.04□□□□□ -0.96
CHD2-221ENST00000635856 ANO8Q9HCE9 1232 aaPredicted RBP9.02□□□□□ -0.97
CHD2-221ENST00000635856 CCER1Q8TC90 406 aaPredicted RBP9□□□□□ -0.97
CHD2-221ENST00000635856 CLSPNQ9HAW4 1339 aa9□□□□□ -0.97
CHD2-221ENST00000635856 PODXL2Q9NZ53 605 aa8.99□□□□□ -0.97
CHD2-221ENST00000635856 PKNOX2Q96KN3 472 aa8.95□□□□□ -0.98
CHD2-221ENST00000635856 ERICH6BQ5W0A0 696 aa8.94□□□□□ -0.98
CHD2-221ENST00000635856 GLIPR1L2Q4G1C9 344 aa8.93□□□□□ -0.98
CHD2-221ENST00000635856 DCAF1Q9Y4B6 1507 aa8.9□□□□□ -0.98
CHD2-221ENST00000635856 TSHZ2Q9NRE2 1034 aa8.88□□□□□ -0.99
CHD2-221ENST00000635856 SUPT5HO00267 1087 aaKnown RBP8.88□□□□□ -0.99
CHD2-221ENST00000635856 PLEKHG5O94827 1062 aa8.88□□□□□ -0.99
CHD2-221ENST00000635856 NEFLP07196 543 aa8.88□□□□□ -0.99
CHD2-221ENST00000635856 RANGAP1P46060 587 aaPredicted RBP8.88□□□□□ -0.99
CHD2-221ENST00000635856 CCDC136Q96JN2 1154 aa8.86□□□□□ -0.99
CHD2-221ENST00000635856 CCDC180Q9P1Z9 1646 aa8.83□□□□□ -1
CHD2-221ENST00000635856 SALL2Q9Y467 1007 aaPredicted RBP8.83□□□□□ -1
CHD2-221ENST00000635856 DEKP35659 375 aaKnown RBP8.82□□□□□ -1
CHD2-221ENST00000635856 SUPT16HQ9Y5B9 1047 aaKnown RBP8.78□□□□□ -1
CHD2-221ENST00000635856 RTL5Q5HYW3 569 aaPredicted RBP8.78□□□□□ -1
CHD2-221ENST00000635856 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.77□□□□□ -1.01
CHD2-221ENST00000635856 CHIC1Q5VXU3 224 aa8.74□□□□□ -1.01
CHD2-221ENST00000635856 MYO15BQ96JP2 1530 aa8.74□□□□□ -1.01
CHD2-221ENST00000635856 ZNF316A6NFI3 1004 aaPredicted RBP8.71□□□□□ -1.02
CHD2-221ENST00000635856 RBM19Q9Y4C8 960 aaKnown RBP8.7□□□□□ -1.02
CHD2-221ENST00000635856 RTN4Q9NQC3 1192 aaKnown RBP8.67□□□□□ -1.02
CHD2-221ENST00000635856 BCANQ96GW7 911 aa8.67□□□□□ -1.02
CHD2-221ENST00000635856 PDE4CQ08493 712 aa8.65□□□□□ -1.02
CHD2-221ENST00000635856 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.63□□□□□ -1.03
CHD2-221ENST00000635856 LOC105371045A0A1W2PR82 267 aa8.62□□□□□ -1.03
CHD2-221ENST00000635856 CDK11AQ9UQ88 783 aaPredicted RBP8.62□□□□□ -1.03
CHD2-221ENST00000635856 MIER1Q8N108 512 aa8.61□□□□□ -1.03
CHD2-221ENST00000635856 VSIG10Q8N0Z9 540 aa8.61□□□□□ -1.03
CHD2-221ENST00000635856 NBR1Q14596 966 aa8.6□□□□□ -1.03
CHD2-221ENST00000635856 TRIM41Q8WV44 630 aa8.6□□□□□ -1.03
CHD2-221ENST00000635856 A0A0U1RQG5 324 aaPredicted RBP8.59□□□□□ -1.03
CHD2-221ENST00000635856 ABCC9O60706 1549 aa8.59□□□□□ -1.03
CHD2-221ENST00000635856 PDIA4P13667 645 aaKnown RBP8.59□□□□□ -1.03
CHD2-221ENST00000635856 FKBP8Q14318 412 aa8.56□□□□□ -1.04
CHD2-221ENST00000635856 FANCIQ9NVI1 1328 aa8.56□□□□□ -1.04
CHD2-221ENST00000635856 RSPH6AQ9H0K4 717 aa8.55□□□□□ -1.04
CHD2-221ENST00000635856 ZMYND15Q9H091 742 aa8.53□□□□□ -1.04
CHD2-221ENST00000635856 SHROOM4Q9ULL8 1493 aa8.52□□□□□ -1.05
CHD2-221ENST00000635856 IL27Q8NEV9 243 aa8.51□□□□□ -1.05
CHD2-221ENST00000635856 NCBP3Q53F19 620 aaKnown RBP8.5□□□□□ -1.05
CHD2-221ENST00000635856 MSH5O43196 834 aa8.48□□□□□ -1.05
CHD2-221ENST00000635856 NOP58Q9Y2X3 529 aaKnown RBP8.48□□□□□ -1.05
CHD2-221ENST00000635856 TIMELESSQ9UNS1 1208 aa8.47□□□□□ -1.05
CHD2-221ENST00000635856 ARXQ96QS3 562 aa8.46□□□□□ -1.05
CHD2-221ENST00000635856 FGD1P98174 961 aa8.46□□□□□ -1.06
CHD2-221ENST00000635856 ZNF326Q5BKZ1 582 aaKnown RBP8.46□□□□□ -1.06
CHD2-221ENST00000635856 TAF7LQ5H9L4 462 aa8.45□□□□□ -1.06
CHD2-221ENST00000635856 ITGAEP38570 1179 aa8.44□□□□□ -1.06
CHD2-221ENST00000635856 ANP32AP39687 249 aaKnown RBP8.43□□□□□ -1.06
CHD2-221ENST00000635856 RBM10P98175 930 aaKnown RBP8.42□□□□□ -1.06
CHD2-221ENST00000635856 KLHL34Q8N239 644 aa8.42□□□□□ -1.06
CHD2-221ENST00000635856 BCL11BQ9C0K0 894 aaPredicted RBP8.42□□□□□ -1.06
CHD2-221ENST00000635856 HSP90AA2PQ14568 343 aaPredicted RBP8.41□□□□□ -1.06
CHD2-221ENST00000635856 ZBTB47Q9UFB7 747 aaPredicted RBP8.41□□□□□ -1.06
CHD2-221ENST00000635856 NEFMP07197 916 aa8.4□□□□□ -1.06
CHD2-221ENST00000635856 AAMPQ13685 434 aa8.37□□□□□ -1.07
CHD2-221ENST00000635856 HSP90AA1P07900 732 aaKnown RBP8.37□□□□□ -1.07
CHD2-221ENST00000635856 NCLP19338 710 aaKnown RBP8.34□□□□□ -1.07
CHD2-221ENST00000635856 NAP1L5Q96NT1 182 aaPredicted RBP8.34□□□□□ -1.07
CHD2-221ENST00000635856 USP35Q9P2H5 1018 aa8.32□□□□□ -1.08
CHD2-221ENST00000635856 RRP9O43818 475 aaKnown RBP8.32□□□□□ -1.08
CHD2-221ENST00000635856 ZCCHC6Q5VYS8 1495 aaKnown RBP8.3□□□□□ -1.08
CHD2-221ENST00000635856 PPM1GO15355 546 aaPredicted RBP8.3□□□□□ -1.08
CHD2-221ENST00000635856 CNGB1Q14028 1251 aaPredicted RBP8.28□□□□□ -1.08
CHD2-221ENST00000635856 C11orf95C9JLR9 678 aaPredicted RBP8.28□□□□□ -1.08
CHD2-221ENST00000635856 RB1CC1Q8TDY2 1594 aa8.28□□□□□ -1.08
CHD2-221ENST00000635856 FAM43AQ8N2R8 423 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms