Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 H19-201ENST00000411754 1788 ntTSL 5 BASIC17.41■□□□□ 0.38
MMP28Q9H239 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
MMP28Q9H239 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MMP28Q9H239 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.41■□□□□ 0.38
MMP28Q9H239 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MMP28Q9H239 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MMP28Q9H239 NT5C3AP1-201ENST00000394500 1012 ntBASIC17.41■□□□□ 0.38
MMP28Q9H239 GLI3-203ENST00000437480 451 ntTSL 2 BASIC17.41■□□□□ 0.38
MMP28Q9H239 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC17.41■□□□□ 0.38
MMP28Q9H239 MIR6084-201ENST00000622012 110 ntBASIC17.41■□□□□ 0.38
MMP28Q9H239 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MMP28Q9H239 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
MMP28Q9H239 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC17.41■□□□□ 0.38
MMP28Q9H239 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
MMP28Q9H239 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
MMP28Q9H239 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MMP28Q9H239 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
MMP28Q9H239 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
MMP28Q9H239 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.4■□□□□ 0.38
MMP28Q9H239 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.4■□□□□ 0.38
MMP28Q9H239 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
MMP28Q9H239 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.4■□□□□ 0.38
MMP28Q9H239 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 AC005224.4-201ENST00000583262 1652 ntBASIC17.4■□□□□ 0.38
MMP28Q9H239 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.4■□□□□ 0.38
MMP28Q9H239 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 AK1-201ENST00000223836 736 ntTSL 3 BASIC17.4■□□□□ 0.38
MMP28Q9H239 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
MMP28Q9H239 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC17.4■□□□□ 0.38
MMP28Q9H239 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
MMP28Q9H239 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.4■□□□□ 0.38
MMP28Q9H239 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
MMP28Q9H239 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MMP28Q9H239 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
MMP28Q9H239 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
MMP28Q9H239 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.39■□□□□ 0.37
MMP28Q9H239 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
MMP28Q9H239 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MMP28Q9H239 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MMP28Q9H239 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MMP28Q9H239 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MMP28Q9H239 AC027612.3-201ENST00000413684 1047 ntBASIC17.39■□□□□ 0.37
MMP28Q9H239 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC17.39■□□□□ 0.37
MMP28Q9H239 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC17.39■□□□□ 0.37
MMP28Q9H239 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MMP28Q9H239 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.39■□□□□ 0.37
MMP28Q9H239 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.39■□□□□ 0.37
MMP28Q9H239 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
MMP28Q9H239 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.39■□□□□ 0.37
MMP28Q9H239 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.39■□□□□ 0.37
MMP28Q9H239 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
MMP28Q9H239 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
MMP28Q9H239 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MMP28Q9H239 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MMP28Q9H239 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
MMP28Q9H239 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
MMP28Q9H239 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MMP28Q9H239 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MMP28Q9H239 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
MMP28Q9H239 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MMP28Q9H239 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
MMP28Q9H239 PXK-203ENST00000383715 1756 ntTSL 5 BASIC17.38■□□□□ 0.37
MMP28Q9H239 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MMP28Q9H239 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
MMP28Q9H239 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MMP28Q9H239 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MMP28Q9H239 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.38■□□□□ 0.37
MMP28Q9H239 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.38■□□□□ 0.37
MMP28Q9H239 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.38■□□□□ 0.37
MMP28Q9H239 AL390961.4-201ENST00000623958 2535 ntBASIC17.38■□□□□ 0.37
MMP28Q9H239 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MMP28Q9H239 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
MMP28Q9H239 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC17.38■□□□□ 0.37
MMP28Q9H239 SP2-202ENST00000613139 908 ntTSL 5 BASIC17.38■□□□□ 0.37
MMP28Q9H239 TMEM179-206ENST00000616017 1645 ntBASIC17.38■□□□□ 0.37
MMP28Q9H239 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MMP28Q9H239 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.38■□□□□ 0.37
MMP28Q9H239 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC17.38■□□□□ 0.37
MMP28Q9H239 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.38■□□□□ 0.37
MMP28Q9H239 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MMP28Q9H239 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
MMP28Q9H239 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.37■□□□□ 0.37
MMP28Q9H239 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.37■□□□□ 0.37
MMP28Q9H239 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms