RNA–Protein interactions for RNA: ENST00000615136.4

MMP28-204, Transcript of matrix metallopeptidase 28, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MMP28, Length 2,033 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-204ENST00000615136 NISCHQ9Y2I1 1504 aa42.19■■■■■ 4.34
MMP28-204ENST00000615136 CCDC180Q9P1Z9 1646 aa36.42■■■■□ 3.42
MMP28-204ENST00000615136 ZCCHC6Q5VYS8 1495 aaKnown RBP35.53■■■■□ 3.28
MMP28-204ENST00000615136 SHROOM4Q9ULL8 1493 aa35.05■■■■□ 3.2
MMP28-204ENST00000615136 DCAF8L2P0C7V8 631 aa34.93■■■■□ 3.18
MMP28-204ENST00000615136 DCAF1Q9Y4B6 1507 aa34.71■■■■□ 3.15
MMP28-204ENST00000615136 ABCC9O60706 1549 aa34.32■■■■□ 3.08
MMP28-204ENST00000615136 MYO15BQ96JP2 1530 aa34.08■■■■□ 3.05
MMP28-204ENST00000615136 SUPT5HO00267 1087 aaKnown RBP33.9■■■■□ 3.02
MMP28-204ENST00000615136 NACADO15069 1562 aa33.82■■■■□ 3.01
MMP28-204ENST00000615136 SCRIBQ14160 1630 aa33.82■■■■□ 3
MMP28-204ENST00000615136 RB1CC1Q8TDY2 1594 aa33.46■■■□□ 2.95
MMP28-204ENST00000615136 UNC13AQ9UPW8 1703 aa32.99■■■□□ 2.87
MMP28-204ENST00000615136 RSF1Q96T23 1441 aaPredicted RBP32.98■■■□□ 2.87
MMP28-204ENST00000615136 CECR2Q9BXF3 1484 aa32.92■■■□□ 2.86
MMP28-204ENST00000615136 MROH2BQ7Z745 1585 aa32.73■■■□□ 2.83
MMP28-204ENST00000615136 CHIC1Q5VXU3 224 aa32.62■■■□□ 2.81
MMP28-204ENST00000615136 BICRAQ9NZM4 1560 aa32.61■■■□□ 2.81
MMP28-204ENST00000615136 PABPN1Q86U42 306 aaKnown RBP eCLIP32.55■■■□□ 2.8
MMP28-204ENST00000615136 WIZO95785 1651 aa32.5■■■□□ 2.79
MMP28-204ENST00000615136 BAZ1AQ9NRL2 1556 aaPredicted RBP32.47■■■□□ 2.79
MMP28-204ENST00000615136 SMARCA4P51532 1647 aa32.34■■■□□ 2.77
MMP28-204ENST00000615136 TOP2AP11388 1531 aaKnown RBP32.02■■■□□ 2.72
MMP28-204ENST00000615136 PEG3Q9GZU2 1588 aa31.83■■■□□ 2.69
MMP28-204ENST00000615136 SMARCA2P51531 1590 aa31.82■■■□□ 2.68
MMP28-204ENST00000615136 CCDC88BA6NC98 1476 aa31.81■■■□□ 2.68
MMP28-204ENST00000615136 EIF4G1Q04637 1599 aaKnown RBP31.76■■■□□ 2.67
MMP28-204ENST00000615136 ATAD2BQ9ULI0 1458 aa31.71■■■□□ 2.67
MMP28-204ENST00000615136 TRIM41Q8WV44 630 aa31.7■■■□□ 2.66
MMP28-204ENST00000615136 LOC105371045A0A1W2PR82 267 aa31.54■■■□□ 2.64
MMP28-204ENST00000615136 BAZ1BQ9UIG0 1483 aaKnown RBP31.53■■■□□ 2.64
MMP28-204ENST00000615136 ABCC8Q09428 1581 aa31.4■■■□□ 2.62
MMP28-204ENST00000615136 FAM9AQ8IZU1 332 aaPredicted RBP31.33■■■□□ 2.61
MMP28-204ENST00000615136 NCAPD3P42695 1498 aa31.28■■■□□ 2.6
MMP28-204ENST00000615136 HMGXB3Q12766 1538 aa31.24■■■□□ 2.59
MMP28-204ENST00000615136 EHMT2Q96KQ7 1210 aa31.02■■■□□ 2.56
MMP28-204ENST00000615136 CC2D2AQ9P2K1 1620 aa30.99■■■□□ 2.55
MMP28-204ENST00000615136 WRNQ14191 1432 aaPredicted RBP eCLIP30.98■■■□□ 2.55
MMP28-204ENST00000615136 SYNJ1O43426 1573 aa30.92■■■□□ 2.54
MMP28-204ENST00000615136 SOGA1O94964 1423 aa30.89■■■□□ 2.54
MMP28-204ENST00000615136 RUSC2Q8N2Y8 1516 aa30.81■■■□□ 2.52
MMP28-204ENST00000615136 CFTRP13569 1480 aa30.76■■■□□ 2.51
MMP28-204ENST00000615136 TOP2BQ02880 1626 aa30.64■■■□□ 2.5
MMP28-204ENST00000615136 EEA1Q15075 1411 aa30.61■■■□□ 2.49
MMP28-204ENST00000615136 PCGF6Q9BYE7 350 aa30.59■■■□□ 2.49
MMP28-204ENST00000615136 BIVM-ERCC5R4GMW8 1640 aa30.59■■■□□ 2.49
MMP28-204ENST00000615136 CSRNP3Q8WYN3 585 aa30.59■■■□□ 2.49
MMP28-204ENST00000615136 CADPSQ9ULU8 1353 aa30.56■■■□□ 2.48
MMP28-204ENST00000615136 HRCP23327 699 aa30.55■■■□□ 2.48
MMP28-204ENST00000615136 PRDM2Q13029 1718 aa30.55■■■□□ 2.48
MMP28-204ENST00000615136 CUX1P39880 1505 aa30.54■■■□□ 2.48
MMP28-204ENST00000615136 DNAJC5BQ9UF47 199 aa30.39■■■□□ 2.45
MMP28-204ENST00000615136 GOLGA3Q08378 1498 aa30.34■■■□□ 2.45
MMP28-204ENST00000615136 TNIKQ9UKE5 1360 aa30.34■■■□□ 2.45
MMP28-204ENST00000615136 NESP48681 1621 aa30.33■■■□□ 2.45
MMP28-204ENST00000615136 KIF21BO75037 1637 aa30.3■■■□□ 2.44
MMP28-204ENST00000615136 UBTFP17480 764 aaKnown RBP30.3■■■□□ 2.44
MMP28-204ENST00000615136 CEP162Q5TB80 1403 aa30.3■■■□□ 2.44
MMP28-204ENST00000615136 TRIM26Q12899 539 aaPredicted RBP30.29■■■□□ 2.44
MMP28-204ENST00000615136 CEP164Q9UPV0 1460 aa30.28■■■□□ 2.44
MMP28-204ENST00000615136 FANCD2Q9BXW9 1451 aa30.26■■■□□ 2.43
MMP28-204ENST00000615136 RAPGEF2Q9Y4G8 1499 aa30.2■■■□□ 2.42
MMP28-204ENST00000615136 FGD5Q6ZNL6 1462 aa30.11■■■□□ 2.41
MMP28-204ENST00000615136 PPARGC1BQ86YN6 1023 aaKnown RBP30.11■■■□□ 2.41
MMP28-204ENST00000615136 LAMC3Q9Y6N6 1575 aa30.1■■■□□ 2.41
MMP28-204ENST00000615136 KIF27Q86VH2 1401 aa30.1■■■□□ 2.41
MMP28-204ENST00000615136 PRXQ9BXM0 1461 aa30.06■■■□□ 2.4
MMP28-204ENST00000615136 DNMBPQ6XZF7 1577 aa30.01■■■□□ 2.39
MMP28-204ENST00000615136 CUX2O14529 1486 aa30.01■■■□□ 2.39
MMP28-204ENST00000615136 TOPBP1Q92547 1522 aa29.98■■■□□ 2.39
MMP28-204ENST00000615136 ERICH3Q5RHP9 1530 aa29.97■■■□□ 2.39
MMP28-204ENST00000615136 CLIP1P30622 1438 aa29.93■■■□□ 2.38
MMP28-204ENST00000615136 URB2Q14146 1524 aaKnown RBP29.91■■■□□ 2.38
MMP28-204ENST00000615136 POLA1P09884 1462 aaPredicted RBP29.9■■■□□ 2.38
MMP28-204ENST00000615136 RAD54L2Q9Y4B4 1467 aa29.9■■■□□ 2.38
MMP28-204ENST00000615136 IGF1RP08069 1367 aa29.88■■■□□ 2.37
MMP28-204ENST00000615136 RANGAP1P46060 587 aaPredicted RBP29.88■■■□□ 2.37
MMP28-204ENST00000615136 KIF21AQ7Z4S6 1674 aa29.87■■■□□ 2.37
MMP28-204ENST00000615136 PDS5BQ9NTI5 1447 aa29.87■■■□□ 2.37
MMP28-204ENST00000615136 ABCA10Q8WWZ4 1543 aa29.77■■■□□ 2.36
MMP28-204ENST00000615136 TTBK1Q5TCY1 1321 aaPredicted RBP29.77■■■□□ 2.36
MMP28-204ENST00000615136 CARMIL1Q5VZK9 1371 aa29.71■■■□□ 2.35
MMP28-204ENST00000615136 VPS8Q8N3P4 1428 aa29.7■■■□□ 2.35
MMP28-204ENST00000615136 WDR97A6NE52 1622 aa29.67■■■□□ 2.34
MMP28-204ENST00000615136 ARAP1Q96P48 1450 aa29.63■■■□□ 2.33
MMP28-204ENST00000615136 ZEB1P37275 1124 aaPredicted RBP29.56■■■□□ 2.32
MMP28-204ENST00000615136 TDRD9Q8NDG6 1382 aaKnown RBP29.56■■■□□ 2.32
MMP28-204ENST00000615136 ABCA5Q8WWZ7 1642 aa29.53■■■□□ 2.32
MMP28-204ENST00000615136 ARHGAP35Q9NRY4 1499 aa29.53■■■□□ 2.32
MMP28-204ENST00000615136 MRC2Q9UBG0 1479 aa29.5■■■□□ 2.31
MMP28-204ENST00000615136 TARBP1Q13395 1621 aaKnown RBP29.5■■■□□ 2.31
MMP28-204ENST00000615136 CUL7Q14999 1698 aa29.47■■■□□ 2.31
MMP28-204ENST00000615136 GAPVD1Q14C86 1478 aa29.45■■■□□ 2.3
MMP28-204ENST00000615136 APLP2Q06481 763 aa29.37■■■□□ 2.29
MMP28-204ENST00000615136 WDR62O43379 1518 aa29.33■■■□□ 2.29
MMP28-204ENST00000615136 AQRO60306 1485 aaKnown RBP eCLIP29.29■■■□□ 2.28
MMP28-204ENST00000615136 CTTNBP2Q8WZ74 1663 aa29.27■■■□□ 2.28
MMP28-204ENST00000615136 ERCC6Q03468 1493 aa29.26■■■□□ 2.28
MMP28-204ENST00000615136 KANK4Q5T7N3 995 aaPredicted RBP29.25■■■□□ 2.27
MMP28-204ENST00000615136 PBRM1Q86U86 1689 aa29.25■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms