Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.049e-13■■□□□ 13.7
SMNDC1O75940 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.036e-7■■□□□ 13.7
SMNDC1O75940 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.16■□□□□ 0.986e-7■■□□□ 13.7
SMNDC1O75940 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.26■□□□□ 0.836e-7■■□□□ 13.7
SMNDC1O75940 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.86e-7■■□□□ 13.7
SMNDC1O75940 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.789e-13■■□□□ 13.7
SMNDC1O75940 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.92■□□□□ 0.786e-7■■□□□ 13.7
SMNDC1O75940 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.84■□□□□ 0.776e-7■■□□□ 13.7
SMNDC1O75940 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.736e-7■■□□□ 13.7
SMNDC1O75940 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.716e-7■■□□□ 13.7
SMNDC1O75940 PPP4R1-228ENST00000584074 625 ntTSL 319.29■□□□□ 0.686e-7■■□□□ 13.7
SMNDC1O75940 TOP1MT-206ENST00000518951 1461 ntTSL 518.58■□□□□ 0.576e-7■■□□□ 13.7
SMNDC1O75940 PPP4R1-221ENST00000582240 578 ntTSL 418.49■□□□□ 0.556e-7■■□□□ 13.7
SMNDC1O75940 CLK3-225ENST00000569063 833 ntTSL 518.2■□□□□ 0.56e-7■■□□□ 13.7
SMNDC1O75940 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.496e-7■■□□□ 13.7
SMNDC1O75940 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.479e-13■■□□□ 13.7
SMNDC1O75940 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.446e-7■■□□□ 13.7
SMNDC1O75940 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.79■□□□□ 0.446e-7■■□□□ 13.7
SMNDC1O75940 RPLP0-227ENST00000552902 869 ntTSL 217.77■□□□□ 0.446e-7■■□□□ 13.7
SMNDC1O75940 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.62■□□□□ 0.416e-7■■□□□ 13.7
SMNDC1O75940 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.6■□□□□ 0.416e-7■■□□□ 13.7
SMNDC1O75940 RPLP0-223ENST00000551783 676 ntTSL 217.43■□□□□ 0.386e-7■■□□□ 13.7
SMNDC1O75940 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.366e-7■■□□□ 13.7
SMNDC1O75940 RPLP0-226ENST00000552461 2591 ntTSL 216.93■□□□□ 0.36e-7■■□□□ 13.7
SMNDC1O75940 PPP4R1-215ENST00000580182 582 ntTSL 316.7■□□□□ 0.266e-7■■□□□ 13.7
SMNDC1O75940 FDFT1-207ENST00000525607 1773 ntTSL 216.69■□□□□ 0.266e-7■■□□□ 13.7
SMNDC1O75940 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.58■□□□□ 0.256e-7■■□□□ 13.7
SMNDC1O75940 TOP1MT-207ENST00000519139 1561 ntTSL 516.51■□□□□ 0.236e-7■■□□□ 13.7
SMNDC1O75940 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.216e-7■■□□□ 13.7
SMNDC1O75940 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.31■□□□□ 0.26e-7■■□□□ 13.7
SMNDC1O75940 TOP1MT-215ENST00000522043 499 ntTSL 316.22■□□□□ 0.196e-7■■□□□ 13.7
SMNDC1O75940 CLK3-221ENST00000568139 918 ntTSL 515.91■□□□□ 0.146e-7■■□□□ 13.7
SMNDC1O75940 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.116e-7■■□□□ 13.7
SMNDC1O75940 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.73■□□□□ 0.116e-7■■□□□ 13.7
SMNDC1O75940 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.62■□□□□ 0.096e-7■■□□□ 13.7
SMNDC1O75940 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.096e-7■■□□□ 13.7
SMNDC1O75940 RPLP0-218ENST00000550856 1003 ntTSL 215.51■□□□□ 0.076e-7■■□□□ 13.7
SMNDC1O75940 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.019e-13■■□□□ 13.7
SMNDC1O75940 CLK3-217ENST00000566126 732 ntTSL 515.1■□□□□ 0.016e-7■■□□□ 13.7
SMNDC1O75940 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.97□□□□□ -0.016e-7■■□□□ 13.7
SMNDC1O75940 KLHL17-202ENST00000463212 955 ntTSL 1 (best)14.9□□□□□ -0.026e-7■■□□□ 13.7
SMNDC1O75940 CLK3-223ENST00000568488 481 ntTSL 314.76□□□□□ -0.056e-7■■□□□ 13.7
SMNDC1O75940 CLK3-206ENST00000562078 2455 ntTSL 214.69□□□□□ -0.066e-7■■□□□ 13.7
SMNDC1O75940 LARP4-214ENST00000548993 790 ntTSL 514.63□□□□□ -0.076e-7■■□□□ 13.7
SMNDC1O75940 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.21□□□□□ -0.146e-7■■□□□ 13.7
SMNDC1O75940 CLK3-211ENST00000563297 526 ntTSL 414.2□□□□□ -0.146e-7■■□□□ 13.7
SMNDC1O75940 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC14.14□□□□□ -0.156e-7■■□□□ 13.7
SMNDC1O75940 CARS-214ENST00000529772 2637 ntTSL 2 BASIC14.07□□□□□ -0.166e-7■■□□□ 13.7
SMNDC1O75940 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC14□□□□□ -0.176e-7■■□□□ 13.7
SMNDC1O75940 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC13.7□□□□□ -0.226e-7■■□□□ 13.7
SMNDC1O75940 LARP4-217ENST00000551886 586 ntTSL 213.64□□□□□ -0.236e-7■■□□□ 13.7
SMNDC1O75940 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.6□□□□□ -0.236e-7■■□□□ 13.7
SMNDC1O75940 CARS-201ENST00000278224 2491 ntTSL 1 (best) BASIC13.43□□□□□ -0.266e-7■■□□□ 13.7
SMNDC1O75940 HMGCS1-201ENST00000325110 3506 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.286e-7■■□□□ 13.7
SMNDC1O75940 CLK3-203ENST00000454830 3787 ntTSL 513.21□□□□□ -0.36e-7■■□□□ 13.7
SMNDC1O75940 CLK3-201ENST00000345005 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.36e-7■■□□□ 13.7
SMNDC1O75940 CLK3-204ENST00000483723 1749 ntTSL 213.08□□□□□ -0.326e-7■■□□□ 13.7
SMNDC1O75940 PPP4R1-202ENST00000400555 3885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.336e-7■■□□□ 13.7
SMNDC1O75940 TOP1MT-209ENST00000519591 1007 ntTSL 513.01□□□□□ -0.336e-7■■□□□ 13.7
SMNDC1O75940 FDFT1-215ENST00000529464 932 ntTSL 1 (best)12.88□□□□□ -0.356e-7■■□□□ 13.7
SMNDC1O75940 RPLP0-206ENST00000546990 770 ntTSL 312.75□□□□□ -0.376e-7■■□□□ 13.7
SMNDC1O75940 HMGCS1-202ENST00000433297 3466 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.46e-7■■□□□ 13.7
SMNDC1O75940 SYVN1-210ENST00000528487 775 ntTSL 512.46□□□□□ -0.416e-7■■□□□ 13.7
SMNDC1O75940 TOP1MT-205ENST00000518760 613 ntTSL 512.38□□□□□ -0.436e-7■■□□□ 13.7
SMNDC1O75940 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC12.29□□□□□ -0.446e-7■■□□□ 13.7
SMNDC1O75940 CARS-202ENST00000380525 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.446e-7■■□□□ 13.7
SMNDC1O75940 CLK3-226ENST00000569406 3591 ntTSL 212.13□□□□□ -0.476e-7■■□□□ 13.7
SMNDC1O75940 LGALS8-226ENST00000529796 556 ntTSL 412.1□□□□□ -0.479e-13■■□□□ 13.7
SMNDC1O75940 TOP1MT-213ENST00000521193 1960 ntTSL 2 BASIC12.05□□□□□ -0.486e-7■■□□□ 13.7
SMNDC1O75940 CLK3-213ENST00000563842 860 ntTSL 512.01□□□□□ -0.496e-7■■□□□ 13.7
SMNDC1O75940 DHX15-201ENST00000336812 2994 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.494e-9■■□□□ 13.7
SMNDC1O75940 LGALS8-208ENST00000416919 6097 ntTSL 5 BASIC11.98□□□□□ -0.499e-13■■□□□ 13.7
SMNDC1O75940 SYVN1-206ENST00000526060 3144 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.56e-7■■□□□ 13.7
SMNDC1O75940 SYVN1-204ENST00000449943 4547 ntTSL 211.79□□□□□ -0.526e-7■■□□□ 13.7
SMNDC1O75940 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC11.7□□□□□ -0.546e-7■■□□□ 13.7
SMNDC1O75940 LARP4-206ENST00000518444 2853 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.546e-7■■□□□ 13.7
SMNDC1O75940 CLK3-224ENST00000568605 1047 ntTSL 211.63□□□□□ -0.556e-7■■□□□ 13.7
SMNDC1O75940 FDFT1-204ENST00000525283 898 ntTSL 311.5□□□□□ -0.576e-7■■□□□ 13.7
SMNDC1O75940 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC11.41□□□□□ -0.586e-7■■□□□ 13.7
SMNDC1O75940 CLK3-214ENST00000564096 805 ntTSL 211.39□□□□□ -0.596e-7■■□□□ 13.7
SMNDC1O75940 RPLP0-204ENST00000546564 844 ntTSL 211.39□□□□□ -0.596e-7■■□□□ 13.7
SMNDC1O75940 RPLP0-216ENST00000550296 562 ntTSL 211.39□□□□□ -0.596e-7■■□□□ 13.7
SMNDC1O75940 CARS-212ENST00000526890 5732 ntTSL 211.38□□□□□ -0.596e-7■■□□□ 13.7
SMNDC1O75940 LGALS8-201ENST00000238181 819 ntTSL 511.36□□□□□ -0.599e-13■■□□□ 13.7
SMNDC1O75940 TOP1MT-217ENST00000523417 698 ntTSL 311.35□□□□□ -0.596e-7■■□□□ 13.7
SMNDC1O75940 LGALS8-219ENST00000526589 6420 ntAPPRIS P4 TSL 5 BASIC11.28□□□□□ -0.69e-13■■□□□ 13.7
SMNDC1O75940 LGALS8-206ENST00000366584 4369 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.619e-13■■□□□ 13.7
SMNDC1O75940 FDFT1-218ENST00000530664 1761 ntTSL 2 BASIC11.11□□□□□ -0.636e-7■■□□□ 13.7
SMNDC1O75940 PPP4R1-203ENST00000400556 3925 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.646e-7■■□□□ 13.7
SMNDC1O75940 CARS-215ENST00000531387 2805 ntTSL 210.91□□□□□ -0.666e-7■■□□□ 13.7
SMNDC1O75940 SYVN1-215ENST00000533685 485 ntTSL 310.88□□□□□ -0.676e-7■■□□□ 13.7
SMNDC1O75940 RPLP0-215ENST00000549242 518 ntTSL 210.86□□□□□ -0.676e-7■■□□□ 13.7
SMNDC1O75940 RPLP0-209ENST00000547211 781 ntTSL 310.86□□□□□ -0.676e-7■■□□□ 13.7
SMNDC1O75940 RPLP0-205ENST00000546989 993 ntTSL 5 BASIC10.86□□□□□ -0.676e-7■■□□□ 13.7
SMNDC1O75940 PPP4R1-219ENST00000581250 578 ntTSL 410.69□□□□□ -0.76e-7■■□□□ 13.7
SMNDC1O75940 LGALS8-212ENST00000450372 6281 ntAPPRIS P4 TSL 1 (best) BASIC10.61□□□□□ -0.719e-13■■□□□ 13.7
SMNDC1O75940 KAT5-212ENST00000533441 735 ntTSL 210.55□□□□□ -0.726e-7■■□□□ 13.7
SMNDC1O75940 LARP4-204ENST00000429001 4000 ntTSL 5 BASIC10.44□□□□□ -0.746e-7■■□□□ 13.7
SMNDC1O75940 RPLP0-203ENST00000392514 1218 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.776e-7■■□□□ 13.7
SMNDC1O75940 RPLP0-217ENST00000550423 561 ntTSL 310.25□□□□□ -0.776e-7■■□□□ 13.7
Retrieved 100 of 11,362 protein–RNA pairs in 145.2 ms