RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 NISCHQ9Y2I1 1504 aa44.57■■■■■ 4.73
CLK3-221ENST00000568139 ABCC9O60706 1549 aa40.26■■■■■ 4.04
CLK3-221ENST00000568139 CCDC180Q9P1Z9 1646 aa40.09■■■■■ 4.01
CLK3-221ENST00000568139 RB1CC1Q8TDY2 1594 aa38.26■■■■□ 3.72
CLK3-221ENST00000568139 DNAJC5BQ9UF47 199 aa38.02■■■■□ 3.68
CLK3-221ENST00000568139 NACADO15069 1562 aa37.97■■■■□ 3.67
CLK3-221ENST00000568139 DCAF8L2P0C7V8 631 aa37.65■■■■□ 3.62
CLK3-221ENST00000568139 PABPN1Q86U42 306 aaKnown RBP eCLIP37.46■■■■□ 3.59
CLK3-221ENST00000568139 UNC13AQ9UPW8 1703 aa37.42■■■■□ 3.58
CLK3-221ENST00000568139 MYO15BQ96JP2 1530 aa37.4■■■■□ 3.58
CLK3-221ENST00000568139 BICRAQ9NZM4 1560 aa37.17■■■■□ 3.54
CLK3-221ENST00000568139 ZCCHC6Q5VYS8 1495 aaKnown RBP36.88■■■■□ 3.5
CLK3-221ENST00000568139 DCAF1Q9Y4B6 1507 aa36.83■■■■□ 3.49
CLK3-221ENST00000568139 SHROOM4Q9ULL8 1493 aa36.66■■■■□ 3.46
CLK3-221ENST00000568139 SCRIBQ14160 1630 aa36.47■■■■□ 3.43
CLK3-221ENST00000568139 CC2D2AQ9P2K1 1620 aa36.39■■■■□ 3.42
CLK3-221ENST00000568139 CECR2Q9BXF3 1484 aa36.31■■■■□ 3.4
CLK3-221ENST00000568139 EIF4G1Q04637 1599 aaKnown RBP36.26■■■■□ 3.39
CLK3-221ENST00000568139 DNAJC5Q9H3Z4 198 aa35.08■■■■□ 3.21
CLK3-221ENST00000568139 NCAPD3P42695 1498 aa35.06■■■■□ 3.2
CLK3-221ENST00000568139 ATAD2BQ9ULI0 1458 aa34.9■■■■□ 3.18
CLK3-221ENST00000568139 CUX2O14529 1486 aa34.84■■■■□ 3.17
CLK3-221ENST00000568139 SMARCA4P51532 1647 aa34.81■■■■□ 3.16
CLK3-221ENST00000568139 SMARCA2P51531 1590 aa34.79■■■■□ 3.16
CLK3-221ENST00000568139 ERCC6Q03468 1493 aa34.77■■■■□ 3.16
CLK3-221ENST00000568139 HMGXB3Q12766 1538 aa34.76■■■■□ 3.16
CLK3-221ENST00000568139 BAZ1AQ9NRL2 1556 aaPredicted RBP34.6■■■■□ 3.13
CLK3-221ENST00000568139 NESP48681 1621 aa34.54■■■■□ 3.12
CLK3-221ENST00000568139 BAZ1BQ9UIG0 1483 aaKnown RBP34.52■■■■□ 3.12
CLK3-221ENST00000568139 PEG3Q9GZU2 1588 aa34.5■■■■□ 3.11
CLK3-221ENST00000568139 MROH2BQ7Z745 1585 aa34.33■■■■□ 3.09
CLK3-221ENST00000568139 LAMC3Q9Y6N6 1575 aa34.29■■■■□ 3.08
CLK3-221ENST00000568139 THOC2Q8NI27 1593 aaKnown RBP34.25■■■■□ 3.07
CLK3-221ENST00000568139 KIF21AQ7Z4S6 1674 aa34.09■■■■□ 3.05
CLK3-221ENST00000568139 PDS5BQ9NTI5 1447 aa34.09■■■■□ 3.05
CLK3-221ENST00000568139 CADPSQ9ULU8 1353 aa33.97■■■■□ 3.03
CLK3-221ENST00000568139 WIZO95785 1651 aa33.9■■■■□ 3.02
CLK3-221ENST00000568139 MRC2Q9UBG0 1479 aa33.8■■■■□ 3
CLK3-221ENST00000568139 WDR62O43379 1518 aa33.74■■■□□ 2.99
CLK3-221ENST00000568139 CEP164Q9UPV0 1460 aa33.62■■■□□ 2.97
CLK3-221ENST00000568139 FANCD2Q9BXW9 1451 aa33.56■■■□□ 2.96
CLK3-221ENST00000568139 RSF1Q96T23 1441 aaPredicted RBP33.54■■■□□ 2.96
CLK3-221ENST00000568139 CFTRP13569 1480 aa33.54■■■□□ 2.96
CLK3-221ENST00000568139 TOP2AP11388 1531 aaKnown RBP33.46■■■□□ 2.95
CLK3-221ENST00000568139 TRIM41Q8WV44 630 aa33.38■■■□□ 2.93
CLK3-221ENST00000568139 URB2Q14146 1524 aaKnown RBP33.31■■■□□ 2.92
CLK3-221ENST00000568139 OSCARQ8IYS5 282 aa33.21■■■□□ 2.91
CLK3-221ENST00000568139 PRDM2Q13029 1718 aa33.19■■■□□ 2.9
CLK3-221ENST00000568139 CCDC88BA6NC98 1476 aa33.09■■■□□ 2.89
CLK3-221ENST00000568139 IFT140Q96RY7 1462 aa32.97■■■□□ 2.87
CLK3-221ENST00000568139 ZNF608Q9ULD9 1512 aaPredicted RBP32.93■■■□□ 2.86
CLK3-221ENST00000568139 TOPBP1Q92547 1522 aa32.92■■■□□ 2.86
CLK3-221ENST00000568139 ABCC8Q09428 1581 aa32.84■■■□□ 2.85
CLK3-221ENST00000568139 RIMBP3CA6NJZ7 1639 aa32.79■■■□□ 2.84
CLK3-221ENST00000568139 RIMBP3BA6NNM3 1639 aa32.79■■■□□ 2.84
CLK3-221ENST00000568139 RIMBP3Q9UFD9 1639 aa32.79■■■□□ 2.84
CLK3-221ENST00000568139 DNMBPQ6XZF7 1577 aa32.77■■■□□ 2.84
CLK3-221ENST00000568139 EIF4G3O43432 1585 aaKnown RBP32.72■■■□□ 2.83
CLK3-221ENST00000568139 ARHGEF11O15085 1522 aa32.66■■■□□ 2.82
CLK3-221ENST00000568139 TARBP1Q13395 1621 aaKnown RBP32.65■■■□□ 2.82
CLK3-221ENST00000568139 AQRO60306 1485 aaKnown RBP eCLIP32.61■■■□□ 2.819e-8■■■■■ 31.4
CLK3-221ENST00000568139 POLA1P09884 1462 aaPredicted RBP32.56■■■□□ 2.8
CLK3-221ENST00000568139 CHD1O14646 1710 aa32.54■■■□□ 2.8
CLK3-221ENST00000568139 RAD54L2Q9Y4B4 1467 aa32.44■■■□□ 2.78
CLK3-221ENST00000568139 CYB5RLQ6IPT4 315 aa32.43■■■□□ 2.78
CLK3-221ENST00000568139 SOGA1O94964 1423 aa32.42■■■□□ 2.78
CLK3-221ENST00000568139 FBLN2P98095 1184 aa32.4■■■□□ 2.78
CLK3-221ENST00000568139 TDRD9Q8NDG6 1382 aaKnown RBP32.36■■■□□ 2.77
CLK3-221ENST00000568139 ARAP1Q96P48 1450 aa32.32■■■□□ 2.76
CLK3-221ENST00000568139 FGD5Q6ZNL6 1462 aa32.31■■■□□ 2.76
CLK3-221ENST00000568139 WDR97A6NE52 1622 aa32.31■■■□□ 2.76
CLK3-221ENST00000568139 CUX1P39880 1505 aa32.26■■■□□ 2.76
CLK3-221ENST00000568139 SNAPC4Q5SXM2 1469 aa32.25■■■□□ 2.75
CLK3-221ENST00000568139 MAGI1Q96QZ7 1491 aaPredicted RBP32.18■■■□□ 2.74
CLK3-221ENST00000568139 CLASP1Q7Z460 1538 aa32.17■■■□□ 2.74
CLK3-221ENST00000568139 GRIN2BQ13224 1484 aa32.16■■■□□ 2.74
CLK3-221ENST00000568139 CHMP7Q8WUX9 453 aaPredicted RBP32.15■■■□□ 2.74
CLK3-221ENST00000568139 SYNJ1O43426 1573 aa32.12■■■□□ 2.73
CLK3-221ENST00000568139 TRHP20396 242 aaPredicted RBP32.1■■■□□ 2.73
CLK3-221ENST00000568139 SYNJ2O15056 1496 aa32.07■■■□□ 2.72
CLK3-221ENST00000568139 GAPVD1Q14C86 1478 aa32.01■■■□□ 2.71
CLK3-221ENST00000568139 PBRM1Q86U86 1689 aa32.01■■■□□ 2.71
CLK3-221ENST00000568139 ABCA10Q8WWZ4 1543 aa31.96■■■□□ 2.71
CLK3-221ENST00000568139 ABCA5Q8WWZ7 1642 aa31.93■■■□□ 2.7
CLK3-221ENST00000568139 SUPT5HO00267 1087 aaKnown RBP31.84■■■□□ 2.69
CLK3-221ENST00000568139 WRNQ14191 1432 aaPredicted RBP eCLIP31.77■■■□□ 2.68
CLK3-221ENST00000568139 GRIN2AQ12879 1464 aa31.73■■■□□ 2.67
CLK3-221ENST00000568139 BIVM-ERCC5R4GMW8 1640 aa31.71■■■□□ 2.67
CLK3-221ENST00000568139 TOP2BQ02880 1626 aa31.69■■■□□ 2.66
CLK3-221ENST00000568139 ADAMTS12P58397 1594 aa31.68■■■□□ 2.66
CLK3-221ENST00000568139 NUP160Q12769 1436 aa31.66■■■□□ 2.66
CLK3-221ENST00000568139 ERCC6L2Q5T890 1561 aa31.64■■■□□ 2.66
CLK3-221ENST00000568139 CEP170Q5SW79 1584 aa31.64■■■□□ 2.65
CLK3-221ENST00000568139 FHAD1B1AJZ9 1412 aa31.6■■■□□ 2.65
CLK3-221ENST00000568139 ERICH3Q5RHP9 1530 aa31.55■■■□□ 2.64
CLK3-221ENST00000568139 SHROOM2Q13796 1616 aa31.55■■■□□ 2.64
CLK3-221ENST00000568139 PRG4Q92954 1404 aaPredicted RBP31.35■■■□□ 2.61
CLK3-221ENST00000568139 JPH4Q96JJ6 628 aa31.34■■■□□ 2.61
CLK3-221ENST00000568139 AEBP2Q6ZN18 517 aaPredicted RBP31.33■■■□□ 2.61
CLK3-221ENST00000568139 RUSC2Q8N2Y8 1516 aa31.24■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms