RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 NISCHQ9Y2I1 1504 aa39.33■■■■□ 3.89
CLK3-211ENST00000563297 ABCC9O60706 1549 aa35.19■■■■□ 3.22
CLK3-211ENST00000563297 CCDC180Q9P1Z9 1646 aa35.19■■■■□ 3.22
CLK3-211ENST00000563297 RB1CC1Q8TDY2 1594 aa33.49■■■□□ 2.95
CLK3-211ENST00000563297 NACADO15069 1562 aa33.3■■■□□ 2.92
CLK3-211ENST00000563297 DCAF8L2P0C7V8 631 aa33.25■■■□□ 2.91
CLK3-211ENST00000563297 DNAJC5BQ9UF47 199 aa33.06■■■□□ 2.88
CLK3-211ENST00000563297 MYO15BQ96JP2 1530 aa32.87■■■□□ 2.85
CLK3-211ENST00000563297 PABPN1Q86U42 306 aaKnown RBP eCLIP32.84■■■□□ 2.85
CLK3-211ENST00000563297 UNC13AQ9UPW8 1703 aa32.75■■■□□ 2.83
CLK3-211ENST00000563297 ZCCHC6Q5VYS8 1495 aaKnown RBP32.58■■■□□ 2.81
CLK3-211ENST00000563297 BICRAQ9NZM4 1560 aa32.55■■■□□ 2.8
CLK3-211ENST00000563297 DCAF1Q9Y4B6 1507 aa32.47■■■□□ 2.79
CLK3-211ENST00000563297 SCRIBQ14160 1630 aa32.09■■■□□ 2.73
CLK3-211ENST00000563297 SHROOM4Q9ULL8 1493 aa32.06■■■□□ 2.72
CLK3-211ENST00000563297 CC2D2AQ9P2K1 1620 aa31.78■■■□□ 2.68
CLK3-211ENST00000563297 EIF4G1Q04637 1599 aaKnown RBP31.73■■■□□ 2.67
CLK3-211ENST00000563297 CECR2Q9BXF3 1484 aa31.69■■■□□ 2.66
CLK3-211ENST00000563297 NCAPD3P42695 1498 aa30.78■■■□□ 2.52
CLK3-211ENST00000563297 ATAD2BQ9ULI0 1458 aa30.69■■■□□ 2.5
CLK3-211ENST00000563297 SMARCA4P51532 1647 aa30.63■■■□□ 2.49
CLK3-211ENST00000563297 SMARCA2P51531 1590 aa30.57■■■□□ 2.48
CLK3-211ENST00000563297 BAZ1AQ9NRL2 1556 aaPredicted RBP30.49■■■□□ 2.47
CLK3-211ENST00000563297 HMGXB3Q12766 1538 aa30.49■■■□□ 2.47
CLK3-211ENST00000563297 BAZ1BQ9UIG0 1483 aaKnown RBP30.36■■■□□ 2.45
CLK3-211ENST00000563297 ERCC6Q03468 1493 aa30.35■■■□□ 2.45
CLK3-211ENST00000563297 PEG3Q9GZU2 1588 aa30.34■■■□□ 2.45
CLK3-211ENST00000563297 MROH2BQ7Z745 1585 aa30.32■■■□□ 2.44
CLK3-211ENST00000563297 DNAJC5Q9H3Z4 198 aa30.28■■■□□ 2.44
CLK3-211ENST00000563297 CUX2O14529 1486 aa30.27■■■□□ 2.44
CLK3-211ENST00000563297 NESP48681 1621 aa30.27■■■□□ 2.44
CLK3-211ENST00000563297 LAMC3Q9Y6N6 1575 aa30.03■■■□□ 2.4
CLK3-211ENST00000563297 WIZO95785 1651 aa29.95■■■□□ 2.38
CLK3-211ENST00000563297 PDS5BQ9NTI5 1447 aa29.88■■■□□ 2.37
CLK3-211ENST00000563297 THOC2Q8NI27 1593 aaKnown RBP29.88■■■□□ 2.37
CLK3-211ENST00000563297 CADPSQ9ULU8 1353 aa29.86■■■□□ 2.37
CLK3-211ENST00000563297 KIF21AQ7Z4S6 1674 aa29.83■■■□□ 2.37
CLK3-211ENST00000563297 RSF1Q96T23 1441 aaPredicted RBP29.74■■■□□ 2.35
CLK3-211ENST00000563297 MRC2Q9UBG0 1479 aa29.59■■■□□ 2.33
CLK3-211ENST00000563297 TOP2AP11388 1531 aaKnown RBP29.54■■■□□ 2.32
CLK3-211ENST00000563297 CFTRP13569 1480 aa29.51■■■□□ 2.31
CLK3-211ENST00000563297 WDR62O43379 1518 aa29.5■■■□□ 2.31
CLK3-211ENST00000563297 FANCD2Q9BXW9 1451 aa29.48■■■□□ 2.31
CLK3-211ENST00000563297 CEP164Q9UPV0 1460 aa29.48■■■□□ 2.31
CLK3-211ENST00000563297 CCDC88BA6NC98 1476 aa29.26■■■□□ 2.27
CLK3-211ENST00000563297 URB2Q14146 1524 aaKnown RBP29.25■■■□□ 2.27
CLK3-211ENST00000563297 PRDM2Q13029 1718 aa29.14■■■□□ 2.26
CLK3-211ENST00000563297 OSCARQ8IYS5 282 aa29■■■□□ 2.23
CLK3-211ENST00000563297 TRIM41Q8WV44 630 aa28.95■■■□□ 2.22
CLK3-211ENST00000563297 TOPBP1Q92547 1522 aa28.94■■■□□ 2.22
CLK3-211ENST00000563297 IFT140Q96RY7 1462 aa28.91■■■□□ 2.22
CLK3-211ENST00000563297 ABCC8Q09428 1581 aa28.88■■■□□ 2.21
CLK3-211ENST00000563297 ZNF608Q9ULD9 1512 aaPredicted RBP28.88■■■□□ 2.21
CLK3-211ENST00000563297 DNMBPQ6XZF7 1577 aa28.8■■■□□ 2.2
CLK3-211ENST00000563297 TARBP1Q13395 1621 aaKnown RBP28.66■■■□□ 2.18
CLK3-211ENST00000563297 EIF4G3O43432 1585 aaKnown RBP28.66■■■□□ 2.18
CLK3-211ENST00000563297 AQRO60306 1485 aaKnown RBP eCLIP28.66■■■□□ 2.189e-8■■■■■ 31.4
CLK3-211ENST00000563297 POLA1P09884 1462 aaPredicted RBP28.65■■■□□ 2.18
CLK3-211ENST00000563297 RAD54L2Q9Y4B4 1467 aa28.57■■■□□ 2.16
CLK3-211ENST00000563297 SOGA1O94964 1423 aa28.55■■■□□ 2.16
CLK3-211ENST00000563297 RIMBP3CA6NJZ7 1639 aa28.53■■■□□ 2.16
CLK3-211ENST00000563297 RIMBP3BA6NNM3 1639 aa28.53■■■□□ 2.16
CLK3-211ENST00000563297 RIMBP3Q9UFD9 1639 aa28.53■■■□□ 2.16
CLK3-211ENST00000563297 SUPT5HO00267 1087 aaKnown RBP28.52■■■□□ 2.16
CLK3-211ENST00000563297 TDRD9Q8NDG6 1382 aaKnown RBP28.5■■■□□ 2.15
CLK3-211ENST00000563297 FBLN2P98095 1184 aa28.47■■■□□ 2.15
CLK3-211ENST00000563297 FGD5Q6ZNL6 1462 aa28.46■■■□□ 2.15
CLK3-211ENST00000563297 CUX1P39880 1505 aa28.46■■■□□ 2.15
CLK3-211ENST00000563297 ARHGEF11O15085 1522 aa28.45■■■□□ 2.15
CLK3-211ENST00000563297 CHD1O14646 1710 aa28.45■■■□□ 2.14
CLK3-211ENST00000563297 WDR97A6NE52 1622 aa28.33■■■□□ 2.13
CLK3-211ENST00000563297 CYB5RLQ6IPT4 315 aa28.33■■■□□ 2.13
CLK3-211ENST00000563297 SNAPC4Q5SXM2 1469 aa28.31■■■□□ 2.12
CLK3-211ENST00000563297 CHMP7Q8WUX9 453 aaPredicted RBP28.28■■■□□ 2.12
CLK3-211ENST00000563297 GRIN2BQ13224 1484 aa28.26■■■□□ 2.11
CLK3-211ENST00000563297 MAGI1Q96QZ7 1491 aaPredicted RBP28.24■■■□□ 2.11
CLK3-211ENST00000563297 GAPVD1Q14C86 1478 aa28.18■■■□□ 2.1
CLK3-211ENST00000563297 ARAP1Q96P48 1450 aa28.18■■■□□ 2.1
CLK3-211ENST00000563297 ABCA10Q8WWZ4 1543 aa28.16■■■□□ 2.1
CLK3-211ENST00000563297 SYNJ2O15056 1496 aa28.15■■■□□ 2.1
CLK3-211ENST00000563297 CLASP1Q7Z460 1538 aa28.13■■■□□ 2.09
CLK3-211ENST00000563297 SYNJ1O43426 1573 aa28.11■■■□□ 2.09
CLK3-211ENST00000563297 PBRM1Q86U86 1689 aa28.1■■■□□ 2.09
CLK3-211ENST00000563297 WRNQ14191 1432 aaPredicted RBP eCLIP28.07■■■□□ 2.08
CLK3-211ENST00000563297 ABCA5Q8WWZ7 1642 aa28.07■■■□□ 2.08
CLK3-211ENST00000563297 TOP2BQ02880 1626 aa28.01■■■□□ 2.07
CLK3-211ENST00000563297 BIVM-ERCC5R4GMW8 1640 aa28■■■□□ 2.07
CLK3-211ENST00000563297 TRHP20396 242 aaPredicted RBP27.97■■■□□ 2.07
CLK3-211ENST00000563297 GRIN2AQ12879 1464 aa27.89■■■□□ 2.05
CLK3-211ENST00000563297 ADAMTS12P58397 1594 aa27.84■■■□□ 2.05
CLK3-211ENST00000563297 FHAD1B1AJZ9 1412 aa27.83■■■□□ 2.05
CLK3-211ENST00000563297 NUP160Q12769 1436 aa27.8■■■□□ 2.04
CLK3-211ENST00000563297 ERICH3Q5RHP9 1530 aa27.79■■■□□ 2.04
CLK3-211ENST00000563297 CEP170Q5SW79 1584 aa27.78■■■□□ 2.04
CLK3-211ENST00000563297 ERCC6L2Q5T890 1561 aa27.73■■■□□ 2.03
CLK3-211ENST00000563297 SHROOM2Q13796 1616 aa27.65■■■□□ 2.02
CLK3-211ENST00000563297 JPH4Q96JJ6 628 aa27.6■■■□□ 2.01
CLK3-211ENST00000563297 PRG4Q92954 1404 aaPredicted RBP27.55■■■□□ 2
CLK3-211ENST00000563297 IGF1RP08069 1367 aa27.53■■■□□ 2
CLK3-211ENST00000563297 KIF27Q86VH2 1401 aa27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms