RNA–Protein interactions for RNA: ENST00000580182.5

PPP4R1-215, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 3

Gene PPP4R1, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-215	ENST00000580182	NISCH	Q9Y2I1	1504 aa		45.52	■■■■■ 4.88
PPP4R1-215	ENST00000580182	CCDC180	Q9P1Z9	1646 aa		40.45	■■■■■ 4.07
PPP4R1-215	ENST00000580182	ABCC9	O60706	1549 aa		39.79	■■■■□ 3.96
PPP4R1-215	ENST00000580182	DCAF8L2	P0C7V8	631 aa		38.16	■■■■□ 3.7
PPP4R1-215	ENST00000580182	RB1CC1	Q8TDY2	1594 aa		38.14	■■■■□ 3.7
PPP4R1-215	ENST00000580182	NACAD	O15069	1562 aa		38.06	■■■■□ 3.68
PPP4R1-215	ENST00000580182	ZCCHC6	Q5VYS8	1495 aa	Known RBP	37.9	■■■■□ 3.66
PPP4R1-215	ENST00000580182	MYO15B	Q96JP2	1530 aa		37.77	■■■■□ 3.64
PPP4R1-215	ENST00000580182	DCAF1	Q9Y4B6	1507 aa		37.6	■■■■□ 3.61
PPP4R1-215	ENST00000580182	UNC13A	Q9UPW8	1703 aa		37.33	■■■■□ 3.57
PPP4R1-215	ENST00000580182	PABPN1	Q86U42	306 aa	Known RBP eCLIP	37.21	■■■■□ 3.55
PPP4R1-215	ENST00000580182	BICRA	Q9NZM4	1560 aa		37.05	■■■■□ 3.52
PPP4R1-215	ENST00000580182	SCRIB	Q14160	1630 aa		37	■■■■□ 3.51
PPP4R1-215	ENST00000580182	DNAJC5B	Q9UF47	199 aa		36.66	■■■■□ 3.46
PPP4R1-215	ENST00000580182	SHROOM4	Q9ULL8	1493 aa		36.51	■■■■□ 3.44
PPP4R1-215	ENST00000580182	EIF4G1	Q04637	1599 aa	Known RBP	36.06	■■■■□ 3.36
PPP4R1-215	ENST00000580182	CC2D2A	Q9P2K1	1620 aa		35.95	■■■■□ 3.35
PPP4R1-215	ENST00000580182	CECR2	Q9BXF3	1484 aa		35.72	■■■■□ 3.31
PPP4R1-215	ENST00000580182	SMARCA4	P51532	1647 aa		35.34	■■■■□ 3.25
PPP4R1-215	ENST00000580182	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	35.26	■■■■□ 3.24
PPP4R1-215	ENST00000580182	ATAD2B	Q9ULI0	1458 aa		35.19	■■■■□ 3.22
PPP4R1-215	ENST00000580182	NCAPD3	P42695	1498 aa		35.15	■■■■□ 3.22
PPP4R1-215	ENST00000580182	MROH2B	Q7Z745	1585 aa		35.13	■■■■□ 3.21
PPP4R1-215	ENST00000580182	SMARCA2	P51531	1590 aa		35.08	■■■■□ 3.21
PPP4R1-215	ENST00000580182	PEG3	Q9GZU2	1588 aa		34.96	■■■■□ 3.19
PPP4R1-215	ENST00000580182	HMGXB3	Q12766	1538 aa		34.95	■■■■□ 3.19
PPP4R1-215	ENST00000580182	BAZ1B	Q9UIG0	1483 aa	Known RBP	34.88	■■■■□ 3.17
PPP4R1-215	ENST00000580182	WIZ	O95785	1651 aa		34.75	■■■■□ 3.15
PPP4R1-215	ENST00000580182	RSF1	Q96T23	1441 aa	Predicted RBP	34.68	■■■■□ 3.14
PPP4R1-215	ENST00000580182	NES	P48681	1621 aa		34.42	■■■■□ 3.1
PPP4R1-215	ENST00000580182	TOP2A	P11388	1531 aa	Known RBP	34.32	■■■■□ 3.08
PPP4R1-215	ENST00000580182	ERCC6	Q03468	1493 aa		34.25	■■■■□ 3.07
PPP4R1-215	ENST00000580182	LAMC3	Q9Y6N6	1575 aa		34.22	■■■■□ 3.07
PPP4R1-215	ENST00000580182	CADPS	Q9ULU8	1353 aa		34.13	■■■■□ 3.05
PPP4R1-215	ENST00000580182	PDS5B	Q9NTI5	1447 aa		33.99	■■■■□ 3.03
PPP4R1-215	ENST00000580182	KIF21A	Q7Z4S6	1674 aa		33.97	■■■■□ 3.03
PPP4R1-215	ENST00000580182	CCDC88B	A6NC98	1476 aa		33.96	■■■■□ 3.03
PPP4R1-215	ENST00000580182	CFTR	P13569	1480 aa		33.91	■■■■□ 3.02
PPP4R1-215	ENST00000580182	CUX2	O14529	1486 aa		33.88	■■■■□ 3.01
PPP4R1-215	ENST00000580182	THOC2	Q8NI27	1593 aa	Known RBP	33.86	■■■■□ 3.01
PPP4R1-215	ENST00000580182	SUPT5H	O00267	1087 aa	Known RBP	33.8	■■■■□ 3
PPP4R1-215	ENST00000580182	FANCD2	Q9BXW9	1451 aa		33.76	■■■□□ 2.99
PPP4R1-215	ENST00000580182	CEP164	Q9UPV0	1460 aa		33.7	■■■□□ 2.99
PPP4R1-215	ENST00000580182	MRC2	Q9UBG0	1479 aa		33.68	■■■□□ 2.98
PPP4R1-215	ENST00000580182	PRDM2	Q13029	1718 aa		33.6	■■■□□ 2.97
PPP4R1-215	ENST00000580182	WDR62	O43379	1518 aa		33.56	■■■□□ 2.96
PPP4R1-215	ENST00000580182	URB2	Q14146	1524 aa	Known RBP	33.45	■■■□□ 2.95
PPP4R1-215	ENST00000580182	TOPBP1	Q92547	1522 aa		33.21	■■■□□ 2.91
PPP4R1-215	ENST00000580182	DNMBP	Q6XZF7	1577 aa		33.14	■■■□□ 2.9
PPP4R1-215	ENST00000580182	ABCC8	Q09428	1581 aa		33.12	■■■□□ 2.89
PPP4R1-215	ENST00000580182	DNAJC5	Q9H3Z4	198 aa		33	■■■□□ 2.87
PPP4R1-215	ENST00000580182	IFT140	Q96RY7	1462 aa		32.99	■■■□□ 2.87
PPP4R1-215	ENST00000580182	CUX1	P39880	1505 aa		32.95	■■■□□ 2.87
PPP4R1-215	ENST00000580182	POLA1	P09884	1462 aa	Predicted RBP	32.93	■■■□□ 2.86
PPP4R1-215	ENST00000580182	ZNF608	Q9ULD9	1512 aa	Predicted RBP	32.92	■■■□□ 2.86
PPP4R1-215	ENST00000580182	TARBP1	Q13395	1621 aa	Known RBP	32.85	■■■□□ 2.85
PPP4R1-215	ENST00000580182	FGD5	Q6ZNL6	1462 aa		32.84	■■■□□ 2.85
PPP4R1-215	ENST00000580182	RAD54L2	Q9Y4B4	1467 aa		32.84	■■■□□ 2.85
PPP4R1-215	ENST00000580182	SOGA1	O94964	1423 aa		32.79	■■■□□ 2.84
PPP4R1-215	ENST00000580182	EIF4G3	O43432	1585 aa	Known RBP	32.75	■■■□□ 2.83
PPP4R1-215	ENST00000580182	AQR	O60306	1485 aa	Known RBP eCLIP	32.73	■■■□□ 2.83	7e-12	■■□□□ 13.1
PPP4R1-215	ENST00000580182	WRN	Q14191	1432 aa	Predicted RBP eCLIP	32.68	■■■□□ 2.82
PPP4R1-215	ENST00000580182	TDRD9	Q8NDG6	1382 aa	Known RBP	32.66	■■■□□ 2.82
PPP4R1-215	ENST00000580182	SYNJ1	O43426	1573 aa		32.64	■■■□□ 2.82
PPP4R1-215	ENST00000580182	TOP2B	Q02880	1626 aa		32.6	■■■□□ 2.81
PPP4R1-215	ENST00000580182	BIVM-ERCC5	R4GMW8	1640 aa		32.59	■■■□□ 2.81
PPP4R1-215	ENST00000580182	WDR97	A6NE52	1622 aa		32.55	■■■□□ 2.8
PPP4R1-215	ENST00000580182	OSCAR	Q8IYS5	282 aa		32.5	■■■□□ 2.79
PPP4R1-215	ENST00000580182	ABCA10	Q8WWZ4	1543 aa		32.49	■■■□□ 2.79
PPP4R1-215	ENST00000580182	GAPVD1	Q14C86	1478 aa		32.4	■■■□□ 2.78
PPP4R1-215	ENST00000580182	SNAPC4	Q5SXM2	1469 aa		32.4	■■■□□ 2.78
PPP4R1-215	ENST00000580182	GRIN2B	Q13224	1484 aa		32.39	■■■□□ 2.78
PPP4R1-215	ENST00000580182	ABCA5	Q8WWZ7	1642 aa		32.37	■■■□□ 2.77
PPP4R1-215	ENST00000580182	CHD1	O14646	1710 aa		32.36	■■■□□ 2.77
PPP4R1-215	ENST00000580182	FBLN2	P98095	1184 aa		32.35	■■■□□ 2.77
PPP4R1-215	ENST00000580182	PBRM1	Q86U86	1689 aa		32.34	■■■□□ 2.77
PPP4R1-215	ENST00000580182	MAGI1	Q96QZ7	1491 aa	Predicted RBP	32.29	■■■□□ 2.76
PPP4R1-215	ENST00000580182	CHMP7	Q8WUX9	453 aa	Predicted RBP	32.21	■■■□□ 2.75
PPP4R1-215	ENST00000580182	SYNJ2	O15056	1496 aa		32.19	■■■□□ 2.74
PPP4R1-215	ENST00000580182	ERICH3	Q5RHP9	1530 aa		32.08	■■■□□ 2.73
PPP4R1-215	ENST00000580182	ADAMTS12	P58397	1594 aa		32.07	■■■□□ 2.72
PPP4R1-215	ENST00000580182	FHAD1	B1AJZ9	1412 aa		32	■■■□□ 2.71
PPP4R1-215	ENST00000580182	RIMBP3C	A6NJZ7	1639 aa		32	■■■□□ 2.71
PPP4R1-215	ENST00000580182	RIMBP3B	A6NNM3	1639 aa		32	■■■□□ 2.71
PPP4R1-215	ENST00000580182	RIMBP3	Q9UFD9	1639 aa		32	■■■□□ 2.71
PPP4R1-215	ENST00000580182	CLASP1	Q7Z460	1538 aa		32	■■■□□ 2.71
PPP4R1-215	ENST00000580182	GRIN2A	Q12879	1464 aa		31.98	■■■□□ 2.71
PPP4R1-215	ENST00000580182	ARHGEF11	O15085	1522 aa		31.98	■■■□□ 2.71
PPP4R1-215	ENST00000580182	KIF27	Q86VH2	1401 aa		31.98	■■■□□ 2.71
PPP4R1-215	ENST00000580182	TRIM41	Q8WV44	630 aa		31.94	■■■□□ 2.7
PPP4R1-215	ENST00000580182	IGF1R	P08069	1367 aa		31.91	■■■□□ 2.7
PPP4R1-215	ENST00000580182	CEP170	Q5SW79	1584 aa		31.86	■■■□□ 2.69
PPP4R1-215	ENST00000580182	NUP160	Q12769	1436 aa		31.84	■■■□□ 2.69
PPP4R1-215	ENST00000580182	RUSC2	Q8N2Y8	1516 aa		31.78	■■■□□ 2.68
PPP4R1-215	ENST00000580182	CUL7	Q14999	1698 aa		31.76	■■■□□ 2.67
PPP4R1-215	ENST00000580182	ARAP1	Q96P48	1450 aa		31.74	■■■□□ 2.67
PPP4R1-215	ENST00000580182	CYB5RL	Q6IPT4	315 aa		31.73	■■■□□ 2.67
PPP4R1-215	ENST00000580182	CARMIL1	Q5VZK9	1371 aa		31.7	■■■□□ 2.67
PPP4R1-215	ENST00000580182	ERCC6L2	Q5T890	1561 aa		31.62	■■■□□ 2.65
PPP4R1-215	ENST00000580182	SHROOM2	Q13796	1616 aa		31.6	■■■□□ 2.65

Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms