RNA–Protein interactions for RNA: ENST00000584074.5

PPP4R1-228, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 3

Gene PPP4R1, Length 625 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-228ENST00000584074 NISCHQ9Y2I1 1504 aa52.89■■■■■ 6.06
PPP4R1-228ENST00000584074 CCDC180Q9P1Z9 1646 aa47.14■■■■■ 5.14
PPP4R1-228ENST00000584074 ABCC9O60706 1549 aa46.72■■■■■ 5.07
PPP4R1-228ENST00000584074 RB1CC1Q8TDY2 1594 aa44.65■■■■■ 4.74
PPP4R1-228ENST00000584074 DCAF8L2P0C7V8 631 aa44.49■■■■■ 4.71
PPP4R1-228ENST00000584074 NACADO15069 1562 aa44.48■■■■■ 4.71
PPP4R1-228ENST00000584074 MYO15BQ96JP2 1530 aa44.03■■■■■ 4.64
PPP4R1-228ENST00000584074 ZCCHC6Q5VYS8 1495 aaKnown RBP43.94■■■■■ 4.62
PPP4R1-228ENST00000584074 DCAF1Q9Y4B6 1507 aa43.68■■■■■ 4.58
PPP4R1-228ENST00000584074 PABPN1Q86U42 306 aaKnown RBP eCLIP43.63■■■■■ 4.57
PPP4R1-228ENST00000584074 UNC13AQ9UPW8 1703 aa43.59■■■■■ 4.57
PPP4R1-228ENST00000584074 DNAJC5BQ9UF47 199 aa43.39■■■■■ 4.54
PPP4R1-228ENST00000584074 BICRAQ9NZM4 1560 aa43.36■■■■■ 4.53
PPP4R1-228ENST00000584074 SCRIBQ14160 1630 aa43.07■■■■■ 4.48
PPP4R1-228ENST00000584074 SHROOM4Q9ULL8 1493 aa42.77■■■■■ 4.44
PPP4R1-228ENST00000584074 EIF4G1Q04637 1599 aaKnown RBP42.24■■■■■ 4.35
PPP4R1-228ENST00000584074 CC2D2AQ9P2K1 1620 aa42.19■■■■■ 4.34
PPP4R1-228ENST00000584074 CECR2Q9BXF3 1484 aa42.01■■■■■ 4.32
PPP4R1-228ENST00000584074 SMARCA4P51532 1647 aa41.11■■■■■ 4.17
PPP4R1-228ENST00000584074 NCAPD3P42695 1498 aa41.09■■■■■ 4.17
PPP4R1-228ENST00000584074 ATAD2BQ9ULI0 1458 aa41.05■■■■■ 4.16
PPP4R1-228ENST00000584074 BAZ1AQ9NRL2 1556 aaPredicted RBP40.99■■■■■ 4.15
PPP4R1-228ENST00000584074 SMARCA2P51531 1590 aa40.93■■■■■ 4.14
PPP4R1-228ENST00000584074 HMGXB3Q12766 1538 aa40.8■■■■■ 4.12
PPP4R1-228ENST00000584074 MROH2BQ7Z745 1585 aa40.78■■■■■ 4.12
PPP4R1-228ENST00000584074 PEG3Q9GZU2 1588 aa40.7■■■■■ 4.11
PPP4R1-228ENST00000584074 BAZ1BQ9UIG0 1483 aaKnown RBP40.68■■■■■ 4.1
PPP4R1-228ENST00000584074 NESP48681 1621 aa40.3■■■■■ 4.04
PPP4R1-228ENST00000584074 WIZO95785 1651 aa40.29■■■■■ 4.04
PPP4R1-228ENST00000584074 ERCC6Q03468 1493 aa40.27■■■■■ 4.04
PPP4R1-228ENST00000584074 RSF1Q96T23 1441 aaPredicted RBP40.16■■■■■ 4.02
PPP4R1-228ENST00000584074 LAMC3Q9Y6N6 1575 aa40.04■■■■■ 4
PPP4R1-228ENST00000584074 CUX2O14529 1486 aa39.98■■■■□ 3.99
PPP4R1-228ENST00000584074 CADPSQ9ULU8 1353 aa39.88■■■■□ 3.97
PPP4R1-228ENST00000584074 PDS5BQ9NTI5 1447 aa39.82■■■■□ 3.97
PPP4R1-228ENST00000584074 TOP2AP11388 1531 aaKnown RBP39.81■■■■□ 3.96
PPP4R1-228ENST00000584074 KIF21AQ7Z4S6 1674 aa39.72■■■■□ 3.95
PPP4R1-228ENST00000584074 THOC2Q8NI27 1593 aaKnown RBP39.72■■■■□ 3.95
PPP4R1-228ENST00000584074 CFTRP13569 1480 aa39.53■■■■□ 3.92
PPP4R1-228ENST00000584074 MRC2Q9UBG0 1479 aa39.44■■■■□ 3.9
PPP4R1-228ENST00000584074 FANCD2Q9BXW9 1451 aa39.43■■■■□ 3.9
PPP4R1-228ENST00000584074 CCDC88BA6NC98 1476 aa39.4■■■■□ 3.9
PPP4R1-228ENST00000584074 CEP164Q9UPV0 1460 aa39.4■■■■□ 3.9
PPP4R1-228ENST00000584074 DNAJC5Q9H3Z4 198 aa39.39■■■■□ 3.9
PPP4R1-228ENST00000584074 WDR62O43379 1518 aa39.31■■■■□ 3.88
PPP4R1-228ENST00000584074 URB2Q14146 1524 aaKnown RBP39.07■■■■□ 3.84
PPP4R1-228ENST00000584074 PRDM2Q13029 1718 aa39.06■■■■□ 3.84
PPP4R1-228ENST00000584074 SUPT5HO00267 1087 aaKnown RBP38.84■■■■□ 3.81
PPP4R1-228ENST00000584074 TOPBP1Q92547 1522 aa38.73■■■■□ 3.79
PPP4R1-228ENST00000584074 ABCC8Q09428 1581 aa38.65■■■■□ 3.78
PPP4R1-228ENST00000584074 DNMBPQ6XZF7 1577 aa38.61■■■■□ 3.77
PPP4R1-228ENST00000584074 IFT140Q96RY7 1462 aa38.59■■■■□ 3.77
PPP4R1-228ENST00000584074 ZNF608Q9ULD9 1512 aaPredicted RBP38.51■■■■□ 3.76
PPP4R1-228ENST00000584074 POLA1P09884 1462 aaPredicted RBP38.38■■■■□ 3.73
PPP4R1-228ENST00000584074 TARBP1Q13395 1621 aaKnown RBP38.33■■■■□ 3.73
PPP4R1-228ENST00000584074 OSCARQ8IYS5 282 aa38.3■■■■□ 3.72
PPP4R1-228ENST00000584074 CUX1P39880 1505 aa38.28■■■■□ 3.72
PPP4R1-228ENST00000584074 EIF4G3O43432 1585 aaKnown RBP38.27■■■■□ 3.72
PPP4R1-228ENST00000584074 RAD54L2Q9Y4B4 1467 aa38.26■■■■□ 3.72
PPP4R1-228ENST00000584074 AQRO60306 1485 aaKnown RBP eCLIP38.25■■■■□ 3.717e-12■■□□□ 13.1
PPP4R1-228ENST00000584074 SOGA1O94964 1423 aa38.23■■■■□ 3.71
PPP4R1-228ENST00000584074 FGD5Q6ZNL6 1462 aa38.22■■■■□ 3.71
PPP4R1-228ENST00000584074 TDRD9Q8NDG6 1382 aaKnown RBP38.11■■■■□ 3.69
PPP4R1-228ENST00000584074 TRIM41Q8WV44 630 aa37.94■■■■□ 3.66
PPP4R1-228ENST00000584074 WDR97A6NE52 1622 aa37.92■■■■□ 3.66
PPP4R1-228ENST00000584074 FBLN2P98095 1184 aa37.91■■■■□ 3.66
PPP4R1-228ENST00000584074 CHD1O14646 1710 aa37.86■■■■□ 3.65
PPP4R1-228ENST00000584074 WRNQ14191 1432 aaPredicted RBP eCLIP37.85■■■■□ 3.65
PPP4R1-228ENST00000584074 SNAPC4Q5SXM2 1469 aa37.84■■■■□ 3.65
PPP4R1-228ENST00000584074 GRIN2BQ13224 1484 aa37.81■■■■□ 3.64
PPP4R1-228ENST00000584074 ABCA10Q8WWZ4 1543 aa37.8■■■■□ 3.64
PPP4R1-228ENST00000584074 SYNJ1O43426 1573 aa37.78■■■■□ 3.64
PPP4R1-228ENST00000584074 TOP2BQ02880 1626 aa37.78■■■■□ 3.64
PPP4R1-228ENST00000584074 GAPVD1Q14C86 1478 aa37.76■■■■□ 3.63
PPP4R1-228ENST00000584074 BIVM-ERCC5R4GMW8 1640 aa37.76■■■■□ 3.63
PPP4R1-228ENST00000584074 MAGI1Q96QZ7 1491 aaPredicted RBP37.74■■■■□ 3.63
PPP4R1-228ENST00000584074 RIMBP3CA6NJZ7 1639 aa37.69■■■■□ 3.62
PPP4R1-228ENST00000584074 RIMBP3BA6NNM3 1639 aa37.69■■■■□ 3.62
PPP4R1-228ENST00000584074 RIMBP3Q9UFD9 1639 aa37.69■■■■□ 3.62
PPP4R1-228ENST00000584074 CHMP7Q8WUX9 453 aaPredicted RBP37.69■■■■□ 3.62
PPP4R1-228ENST00000584074 ABCA5Q8WWZ7 1642 aa37.67■■■■□ 3.62
PPP4R1-228ENST00000584074 ARHGEF11O15085 1522 aa37.66■■■■□ 3.62
PPP4R1-228ENST00000584074 PBRM1Q86U86 1689 aa37.64■■■■□ 3.62
PPP4R1-228ENST00000584074 SYNJ2O15056 1496 aa37.62■■■■□ 3.61
PPP4R1-228ENST00000584074 CLASP1Q7Z460 1538 aa37.47■■■■□ 3.59
PPP4R1-228ENST00000584074 CYB5RLQ6IPT4 315 aa37.41■■■■□ 3.58
PPP4R1-228ENST00000584074 ADAMTS12P58397 1594 aa37.36■■■■□ 3.57
PPP4R1-228ENST00000584074 ARAP1Q96P48 1450 aa37.34■■■■□ 3.57
PPP4R1-228ENST00000584074 GRIN2AQ12879 1464 aa37.33■■■■□ 3.57
PPP4R1-228ENST00000584074 ERICH3Q5RHP9 1530 aa37.32■■■■□ 3.57
PPP4R1-228ENST00000584074 FHAD1B1AJZ9 1412 aa37.3■■■■□ 3.56
PPP4R1-228ENST00000584074 NUP160Q12769 1436 aa37.18■■■■□ 3.54
PPP4R1-228ENST00000584074 CEP170Q5SW79 1584 aa37.17■■■■□ 3.54
PPP4R1-228ENST00000584074 KIF27Q86VH2 1401 aa37.09■■■■□ 3.53
PPP4R1-228ENST00000584074 IGF1RP08069 1367 aa37.04■■■■□ 3.52
PPP4R1-228ENST00000584074 ERCC6L2Q5T890 1561 aa36.97■■■■□ 3.51
PPP4R1-228ENST00000584074 SHROOM2Q13796 1616 aa36.92■■■■□ 3.5
PPP4R1-228ENST00000584074 CUL7Q14999 1698 aa36.86■■■■□ 3.49
PPP4R1-228ENST00000584074 JPH4Q96JJ6 628 aa36.84■■■■□ 3.49
PPP4R1-228ENST00000584074 RUSC2Q8N2Y8 1516 aa36.82■■■■□ 3.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms