RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 NISCHQ9Y2I1 1504 aa29.86■■■□□ 2.37
CLK3-214ENST00000564096 CCDC180Q9P1Z9 1646 aa26.34■■□□□ 1.81
CLK3-214ENST00000564096 ABCC9O60706 1549 aa25.09■■□□□ 1.61
CLK3-214ENST00000564096 ZCCHC6Q5VYS8 1495 aaKnown RBP25.06■■□□□ 1.6
CLK3-214ENST00000564096 DCAF1Q9Y4B6 1507 aa24.79■■□□□ 1.56
CLK3-214ENST00000564096 MYO15BQ96JP2 1530 aa24.67■■□□□ 1.54
CLK3-214ENST00000564096 DCAF8L2P0C7V8 631 aa24.63■■□□□ 1.53
CLK3-214ENST00000564096 NACADO15069 1562 aa24.6■■□□□ 1.53
CLK3-214ENST00000564096 RB1CC1Q8TDY2 1594 aa24.48■■□□□ 1.51
CLK3-214ENST00000564096 SCRIBQ14160 1630 aa24.06■■□□□ 1.44
CLK3-214ENST00000564096 SHROOM4Q9ULL8 1493 aa23.95■■□□□ 1.42
CLK3-214ENST00000564096 UNC13AQ9UPW8 1703 aa23.81■■□□□ 1.4
CLK3-214ENST00000564096 BICRAQ9NZM4 1560 aa23.61■■□□□ 1.37
CLK3-214ENST00000564096 PABPN1Q86U42 306 aaKnown RBP eCLIP23.49■■□□□ 1.35
CLK3-214ENST00000564096 BAZ1AQ9NRL2 1556 aaPredicted RBP23.17■■□□□ 1.3
CLK3-214ENST00000564096 CECR2Q9BXF3 1484 aa23.13■■□□□ 1.29
CLK3-214ENST00000564096 SMARCA4P51532 1647 aa23.06■■□□□ 1.28
CLK3-214ENST00000564096 EIF4G1Q04637 1599 aaKnown RBP23.01■■□□□ 1.27
CLK3-214ENST00000564096 MROH2BQ7Z745 1585 aa23■■□□□ 1.27
CLK3-214ENST00000564096 RSF1Q96T23 1441 aaPredicted RBP22.97■■□□□ 1.27
CLK3-214ENST00000564096 DNAJC5BQ9UF47 199 aa22.85■■□□□ 1.25
CLK3-214ENST00000564096 SUPT5HO00267 1087 aaKnown RBP22.84■■□□□ 1.25
CLK3-214ENST00000564096 PEG3Q9GZU2 1588 aa22.83■■□□□ 1.25
CLK3-214ENST00000564096 SMARCA2P51531 1590 aa22.82■■□□□ 1.24
CLK3-214ENST00000564096 WIZO95785 1651 aa22.77■■□□□ 1.24
CLK3-214ENST00000564096 ATAD2BQ9ULI0 1458 aa22.75■■□□□ 1.23
CLK3-214ENST00000564096 CC2D2AQ9P2K1 1620 aa22.73■■□□□ 1.23
CLK3-214ENST00000564096 TOP2AP11388 1531 aaKnown RBP22.67■■□□□ 1.22
CLK3-214ENST00000564096 HMGXB3Q12766 1538 aa22.67■■□□□ 1.22
CLK3-214ENST00000564096 BAZ1BQ9UIG0 1483 aaKnown RBP22.66■■□□□ 1.22
CLK3-214ENST00000564096 NCAPD3P42695 1498 aa22.64■■□□□ 1.21
CLK3-214ENST00000564096 AEBP2Q6ZN18 517 aaPredicted RBP22.36■■□□□ 1.17
CLK3-214ENST00000564096 CCDC88BA6NC98 1476 aa22.31■■□□□ 1.16
CLK3-214ENST00000564096 CHIC1Q5VXU3 224 aa22.15■■□□□ 1.14
CLK3-214ENST00000564096 CFTRP13569 1480 aa22.03■■□□□ 1.12
CLK3-214ENST00000564096 CADPSQ9ULU8 1353 aa22.02■■□□□ 1.12
CLK3-214ENST00000564096 LAMC3Q9Y6N6 1575 aa21.99■■□□□ 1.11
CLK3-214ENST00000564096 PRDM2Q13029 1718 aa21.94■■□□□ 1.1
CLK3-214ENST00000564096 NESP48681 1621 aa21.86■■□□□ 1.09
CLK3-214ENST00000564096 PDS5BQ9NTI5 1447 aa21.83■■□□□ 1.09
CLK3-214ENST00000564096 FANCD2Q9BXW9 1451 aa21.79■■□□□ 1.08
CLK3-214ENST00000564096 CEP164Q9UPV0 1460 aa21.75■■□□□ 1.07
CLK3-214ENST00000564096 ABCC8Q09428 1581 aa21.7■■□□□ 1.06
CLK3-214ENST00000564096 WRNQ14191 1432 aaPredicted RBP eCLIP21.7■■□□□ 1.06
CLK3-214ENST00000564096 ERCC6Q03468 1493 aa21.66■■□□□ 1.06
CLK3-214ENST00000564096 KIF21AQ7Z4S6 1674 aa21.65■■□□□ 1.06
CLK3-214ENST00000564096 TRIM41Q8WV44 630 aa21.59■■□□□ 1.05
CLK3-214ENST00000564096 SYNJ1O43426 1573 aa21.58■■□□□ 1.05
CLK3-214ENST00000564096 TOP2BQ02880 1626 aa21.58■■□□□ 1.04
CLK3-214ENST00000564096 MRC2Q9UBG0 1479 aa21.58■■□□□ 1.04
CLK3-214ENST00000564096 DNMBPQ6XZF7 1577 aa21.57■■□□□ 1.04
CLK3-214ENST00000564096 CUX1P39880 1505 aa21.56■■□□□ 1.04
CLK3-214ENST00000564096 BIVM-ERCC5R4GMW8 1640 aa21.56■■□□□ 1.04
CLK3-214ENST00000564096 TOPBP1Q92547 1522 aa21.5■■□□□ 1.03
CLK3-214ENST00000564096 URB2Q14146 1524 aaKnown RBP21.5■■□□□ 1.03
CLK3-214ENST00000564096 DNAJC5Q9H3Z4 198 aa21.49■■□□□ 1.03
CLK3-214ENST00000564096 WDR62O43379 1518 aa21.47■■□□□ 1.03
CLK3-214ENST00000564096 THOC2Q8NI27 1593 aaKnown RBP21.47■■□□□ 1.03
CLK3-214ENST00000564096 FGD5Q6ZNL6 1462 aa21.42■■□□□ 1.02
CLK3-214ENST00000564096 POLA1P09884 1462 aaPredicted RBP21.37■■□□□ 1.01
CLK3-214ENST00000564096 EEA1Q15075 1411 aa21.28■■□□□ 1
CLK3-214ENST00000564096 SOGA1O94964 1423 aa21.27■■□□□ 1
CLK3-214ENST00000564096 IFT140Q96RY7 1462 aa21.26■□□□□ 0.99
CLK3-214ENST00000564096 ABCA10Q8WWZ4 1543 aa21.25■□□□□ 0.99
CLK3-214ENST00000564096 RAD54L2Q9Y4B4 1467 aa21.22■□□□□ 0.99
CLK3-214ENST00000564096 KIF27Q86VH2 1401 aa21.21■□□□□ 0.99
CLK3-214ENST00000564096 CUX2O14529 1486 aa21.21■□□□□ 0.99
CLK3-214ENST00000564096 WDR97A6NE52 1622 aa21.21■□□□□ 0.99
CLK3-214ENST00000564096 TARBP1Q13395 1621 aaKnown RBP21.19■□□□□ 0.98
CLK3-214ENST00000564096 ABCA5Q8WWZ7 1642 aa21.11■□□□□ 0.97
CLK3-214ENST00000564096 FAM9AQ8IZU1 332 aaPredicted RBP21.07■□□□□ 0.96
CLK3-214ENST00000564096 RUSC2Q8N2Y8 1516 aa21.07■□□□□ 0.96
CLK3-214ENST00000564096 GAPVD1Q14C86 1478 aa21.07■□□□□ 0.96
CLK3-214ENST00000564096 EIF4G3O43432 1585 aaKnown RBP21.05■□□□□ 0.96
CLK3-214ENST00000564096 TDRD9Q8NDG6 1382 aaKnown RBP21.04■□□□□ 0.96
CLK3-214ENST00000564096 ERICH3Q5RHP9 1530 aa21.03■□□□□ 0.96
CLK3-214ENST00000564096 CSRNP3Q8WYN3 585 aa21.02■□□□□ 0.96
CLK3-214ENST00000564096 ZNF608Q9ULD9 1512 aaPredicted RBP21.02■□□□□ 0.96
CLK3-214ENST00000564096 GRIN2BQ13224 1484 aa21■□□□□ 0.95
CLK3-214ENST00000564096 CUL7Q14999 1698 aa20.99■□□□□ 0.95
CLK3-214ENST00000564096 AQRO60306 1485 aaKnown RBP eCLIP20.98■□□□□ 0.959e-8■■■■■ 31.4
CLK3-214ENST00000564096 PBRM1Q86U86 1689 aa20.98■□□□□ 0.95
CLK3-214ENST00000564096 KIF21BO75037 1637 aa20.96■□□□□ 0.95
CLK3-214ENST00000564096 IGF1RP08069 1367 aa20.95■□□□□ 0.94
CLK3-214ENST00000564096 PRXQ9BXM0 1461 aa20.93■□□□□ 0.94
CLK3-214ENST00000564096 GOLGA3Q08378 1498 aa20.92■□□□□ 0.94
CLK3-214ENST00000564096 MAGI1Q96QZ7 1491 aaPredicted RBP20.9■□□□□ 0.94
CLK3-214ENST00000564096 ADAMTS12P58397 1594 aa20.89■□□□□ 0.94
CLK3-214ENST00000564096 CARMIL1Q5VZK9 1371 aa20.88■□□□□ 0.93
CLK3-214ENST00000564096 SNAPC4Q5SXM2 1469 aa20.88■□□□□ 0.93
CLK3-214ENST00000564096 RAPGEF2Q9Y4G8 1499 aa20.87■□□□□ 0.93
CLK3-214ENST00000564096 FHAD1B1AJZ9 1412 aa20.86■□□□□ 0.93
CLK3-214ENST00000564096 SYNJ2O15056 1496 aa20.79■□□□□ 0.92
CLK3-214ENST00000564096 EHMT2Q96KQ7 1210 aa20.73■□□□□ 0.91
CLK3-214ENST00000564096 UBTFP17480 764 aaKnown RBP20.72■□□□□ 0.91
CLK3-214ENST00000564096 GRIN2AQ12879 1464 aa20.72■□□□□ 0.91
CLK3-214ENST00000564096 TNIKQ9UKE5 1360 aa20.72■□□□□ 0.91
CLK3-214ENST00000564096 LOC105371045A0A1W2PR82 267 aa20.71■□□□□ 0.91
CLK3-214ENST00000564096 CHMP7Q8WUX9 453 aaPredicted RBP20.68■□□□□ 0.9
CLK3-214ENST00000564096 CTTNBP2Q8WZ74 1663 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms