RNA–Protein interactions for RNA: ENST00000400556.7

PPP4R1-203, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PPP4R1, Length 3,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-203ENST00000400556 NISCHQ9Y2I1 1504 aa21.11■□□□□ 0.97
PPP4R1-203ENST00000400556 SHROOM4Q9ULL8 1493 aa18.73■□□□□ 0.59
PPP4R1-203ENST00000400556 SUPT5HO00267 1087 aaKnown RBP18.44■□□□□ 0.54
PPP4R1-203ENST00000400556 DCAF8L2P0C7V8 631 aa18.14■□□□□ 0.49
PPP4R1-203ENST00000400556 ZCCHC6Q5VYS8 1495 aaKnown RBP17.84■□□□□ 0.45
PPP4R1-203ENST00000400556 MYO15BQ96JP2 1530 aa17.77■□□□□ 0.44
PPP4R1-203ENST00000400556 CHIC1Q5VXU3 224 aa17.77■□□□□ 0.43
PPP4R1-203ENST00000400556 PCGF6Q9BYE7 350 aa17.62■□□□□ 0.41
PPP4R1-203ENST00000400556 CCDC180Q9P1Z9 1646 aa17.59■□□□□ 0.41
PPP4R1-203ENST00000400556 HRCP23327 699 aa17.51■□□□□ 0.39
PPP4R1-203ENST00000400556 LOC105371045A0A1W2PR82 267 aa17.48■□□□□ 0.39
PPP4R1-203ENST00000400556 PPARGC1BQ86YN6 1023 aaKnown RBP17.45■□□□□ 0.38
PPP4R1-203ENST00000400556 EHMT2Q96KQ7 1210 aa17.22■□□□□ 0.35
PPP4R1-203ENST00000400556 FAM9AQ8IZU1 332 aaPredicted RBP17.14■□□□□ 0.33
PPP4R1-203ENST00000400556 DCAF1Q9Y4B6 1507 aa17.03■□□□□ 0.32
PPP4R1-203ENST00000400556 TRIM41Q8WV44 630 aa16.98■□□□□ 0.31
PPP4R1-203ENST00000400556 TRIM26Q12899 539 aaPredicted RBP16.97■□□□□ 0.31
PPP4R1-203ENST00000400556 SCRIBQ14160 1630 aa16.97■□□□□ 0.31
PPP4R1-203ENST00000400556 RSF1Q96T23 1441 aaPredicted RBP16.89■□□□□ 0.29
PPP4R1-203ENST00000400556 ABCC9O60706 1549 aa16.86■□□□□ 0.29
PPP4R1-203ENST00000400556 RB1CC1Q8TDY2 1594 aa16.79■□□□□ 0.28
PPP4R1-203ENST00000400556 CECR2Q9BXF3 1484 aa16.68■□□□□ 0.26
PPP4R1-203ENST00000400556 TTBK1Q5TCY1 1321 aaPredicted RBP16.66■□□□□ 0.26
PPP4R1-203ENST00000400556 MROH2BQ7Z745 1585 aa16.56■□□□□ 0.24
PPP4R1-203ENST00000400556 ZEB1P37275 1124 aaPredicted RBP16.54■□□□□ 0.24
PPP4R1-203ENST00000400556 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.53■□□□□ 0.24
PPP4R1-203ENST00000400556 WIZO95785 1651 aa16.48■□□□□ 0.23
PPP4R1-203ENST00000400556 CCER1Q8TC90 406 aaPredicted RBP16.41■□□□□ 0.22
PPP4R1-203ENST00000400556 SCAF1Q9H7N4 1312 aaKnown RBP16.38■□□□□ 0.21
PPP4R1-203ENST00000400556 NACADO15069 1562 aa16.33■□□□□ 0.2
PPP4R1-203ENST00000400556 ABCC8Q09428 1581 aa16.3■□□□□ 0.2
PPP4R1-203ENST00000400556 CCDC88BA6NC98 1476 aa16.24■□□□□ 0.19
PPP4R1-203ENST00000400556 UBTFP17480 764 aaKnown RBP16.23■□□□□ 0.19
PPP4R1-203ENST00000400556 PABPN1Q86U42 306 aaKnown RBP eCLIP16.2■□□□□ 0.18
PPP4R1-203ENST00000400556 SOGA1O94964 1423 aa16.19■□□□□ 0.18
PPP4R1-203ENST00000400556 BAZ1AQ9NRL2 1556 aaPredicted RBP16.19■□□□□ 0.18
PPP4R1-203ENST00000400556 RANGAP1P46060 587 aaPredicted RBP16.16■□□□□ 0.18
PPP4R1-203ENST00000400556 NEUROD1Q13562 356 aa16.15■□□□□ 0.18
PPP4R1-203ENST00000400556 RUSC2Q8N2Y8 1516 aa16.14■□□□□ 0.17
PPP4R1-203ENST00000400556 DIEXFQ68CQ4 756 aaKnown RBP16.13■□□□□ 0.17
PPP4R1-203ENST00000400556 CEP162Q5TB80 1403 aa16.13■□□□□ 0.17
PPP4R1-203ENST00000400556 EIF4G1Q04637 1599 aaKnown RBP16.1■□□□□ 0.17
PPP4R1-203ENST00000400556 CSRNP3Q8WYN3 585 aa16.08■□□□□ 0.16
PPP4R1-203ENST00000400556 HNRNPUL2Q1KMD3 747 aaKnown RBP16.07■□□□□ 0.16
PPP4R1-203ENST00000400556 ACIN1Q9UKV3 1341 aaKnown RBP16.06■□□□□ 0.16
PPP4R1-203ENST00000400556 TOP2AP11388 1531 aaKnown RBP16.04■□□□□ 0.16
PPP4R1-203ENST00000400556 YTHDC1Q96MU7 727 aaKnown RBP16.03■□□□□ 0.16
PPP4R1-203ENST00000400556 SMARCA2P51531 1590 aa16.03■□□□□ 0.16
PPP4R1-203ENST00000400556 SMARCA4P51532 1647 aa16.02■□□□□ 0.16
PPP4R1-203ENST00000400556 GTF3C3Q9Y5Q9 886 aa16.02■□□□□ 0.15
PPP4R1-203ENST00000400556 TNIKQ9UKE5 1360 aa15.97■□□□□ 0.15
PPP4R1-203ENST00000400556 WRNQ14191 1432 aaPredicted RBP eCLIP15.94■□□□□ 0.14
PPP4R1-203ENST00000400556 CENPBP07199 599 aaPredicted RBP15.91■□□□□ 0.14
PPP4R1-203ENST00000400556 UNC13AQ9UPW8 1703 aa15.9■□□□□ 0.14
PPP4R1-203ENST00000400556 PELP1Q8IZL8 1130 aaKnown RBP15.9■□□□□ 0.14
PPP4R1-203ENST00000400556 ZNF316A6NFI3 1004 aaPredicted RBP15.88■□□□□ 0.13
PPP4R1-203ENST00000400556 GOLGA3Q08378 1498 aa15.85■□□□□ 0.13
PPP4R1-203ENST00000400556 APLP2Q06481 763 aa15.82■□□□□ 0.12
PPP4R1-203ENST00000400556 MIER1Q8N108 512 aa15.82■□□□□ 0.12
PPP4R1-203ENST00000400556 CLIP1P30622 1438 aa15.79■□□□□ 0.12
PPP4R1-203ENST00000400556 EEA1Q15075 1411 aa15.79■□□□□ 0.12
PPP4R1-203ENST00000400556 SYNJ1O43426 1573 aa15.78■□□□□ 0.12
PPP4R1-203ENST00000400556 RAPGEF2Q9Y4G8 1499 aa15.73■□□□□ 0.11
PPP4R1-203ENST00000400556 CEP164Q9UPV0 1460 aa15.72■□□□□ 0.11
PPP4R1-203ENST00000400556 BICRAQ9NZM4 1560 aa15.72■□□□□ 0.11
PPP4R1-203ENST00000400556 ITGAEP38570 1179 aa15.67■□□□□ 0.1
PPP4R1-203ENST00000400556 VPS8Q8N3P4 1428 aa15.66■□□□□ 0.1
PPP4R1-203ENST00000400556 BAZ1BQ9UIG0 1483 aaKnown RBP15.65■□□□□ 0.1
PPP4R1-203ENST00000400556 ATAD2BQ9ULI0 1458 aa15.63■□□□□ 0.09
PPP4R1-203ENST00000400556 KANK4Q5T7N3 995 aaPredicted RBP15.62■□□□□ 0.09
PPP4R1-203ENST00000400556 KIF21BO75037 1637 aa15.58■□□□□ 0.08
PPP4R1-203ENST00000400556 PEG3Q9GZU2 1588 aa15.52■□□□□ 0.07
PPP4R1-203ENST00000400556 DHX57Q6P158 1386 aaKnown RBP15.48■□□□□ 0.07
PPP4R1-203ENST00000400556 ARAP1Q96P48 1450 aa15.44■□□□□ 0.06
PPP4R1-203ENST00000400556 ATP1B4Q9UN42 357 aaPredicted RBP15.43■□□□□ 0.06
PPP4R1-203ENST00000400556 TOP2BQ02880 1626 aa15.43■□□□□ 0.06
PPP4R1-203ENST00000400556 P3H3Q8IVL6 736 aa15.4■□□□□ 0.06
PPP4R1-203ENST00000400556 KCNH8Q96L42 1107 aa15.39■□□□□ 0.05
PPP4R1-203ENST00000400556 PRXQ9BXM0 1461 aa15.38■□□□□ 0.05
PPP4R1-203ENST00000400556 CUX1P39880 1505 aa15.36■□□□□ 0.05
PPP4R1-203ENST00000400556 HIRIP3Q9BW71 556 aaPredicted RBP15.34■□□□□ 0.05
PPP4R1-203ENST00000400556 KIF27Q86VH2 1401 aa15.33■□□□□ 0.04
PPP4R1-203ENST00000400556 FAM50AQ14320 339 aaKnown RBP15.33■□□□□ 0.04
PPP4R1-203ENST00000400556 CCNB3Q8WWL7 1395 aa15.32■□□□□ 0.04
PPP4R1-203ENST00000400556 SIN3AQ96ST3 1273 aa15.31■□□□□ 0.04
PPP4R1-203ENST00000400556 ARHGAP35Q9NRY4 1499 aa15.3■□□□□ 0.04
PPP4R1-203ENST00000400556 SUPT16HQ9Y5B9 1047 aaKnown RBP15.3■□□□□ 0.04
PPP4R1-203ENST00000400556 BIVM-ERCC5R4GMW8 1640 aa15.29■□□□□ 0.04
PPP4R1-203ENST00000400556 BCANQ96GW7 911 aa15.28■□□□□ 0.04
PPP4R1-203ENST00000400556 ERICH3Q5RHP9 1530 aa15.28■□□□□ 0.04
PPP4R1-203ENST00000400556 RAB3GAP2Q9H2M9 1393 aa15.27■□□□□ 0.03
PPP4R1-203ENST00000400556 CLSPNQ9HAW4 1339 aa15.26■□□□□ 0.03
PPP4R1-203ENST00000400556 DDX10Q13206 875 aaKnown RBP15.26■□□□□ 0.03
PPP4R1-203ENST00000400556 RRBP1Q9P2E9 1410 aaKnown RBP15.25■□□□□ 0.03
PPP4R1-203ENST00000400556 CUX2O14529 1486 aa15.25■□□□□ 0.03
PPP4R1-203ENST00000400556 IGF1RP08069 1367 aa15.2■□□□□ 0.02
PPP4R1-203ENST00000400556 NCAPD3P42695 1498 aa15.19■□□□□ 0.02
PPP4R1-203ENST00000400556 PHLDB1Q86UU1 1377 aa15.18■□□□□ 0.02
PPP4R1-203ENST00000400556 CFTRP13569 1480 aa15.17■□□□□ 0.02
PPP4R1-203ENST00000400556 CARMIL1Q5VZK9 1371 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms