Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 RPL10-216ENST00000491035 1369 ntTSL 58.58□□□□□ -1.043e-13■■■□□ 18.1
SUB1P53999 RPL10-209ENST00000451365 713 ntTSL 1 (best)8.13□□□□□ -1.113e-13■■■□□ 18.1
SUB1P53999 RPL10-211ENST00000467168 802 ntTSL 27.98□□□□□ -1.133e-13■■■□□ 18.1
SUB1P53999 RSL24D1-201ENST00000260443 2015 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.151e-15■■■□□ 18.1
SUB1P53999 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.266e-9■■■□□ 18
SUB1P53999 USP39-204ENST00000409766 2033 ntTSL 2 BASIC16.17■□□□□ 0.186e-9■■■□□ 18
SUB1P53999 USP39-202ENST00000409025 1946 ntTSL 5 BASIC15.24■□□□□ 0.036e-9■■■□□ 18
SUB1P53999 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.076e-9■■■□□ 18
SUB1P53999 USP39-207ENST00000450066 2086 ntTSL 2 BASIC11.38□□□□□ -0.596e-9■■■□□ 18
SUB1P53999 USP39-220ENST00000613444 2161 ntTSL 2 BASIC11.25□□□□□ -0.616e-9■■■□□ 18
SUB1P53999 USP39-210ENST00000459775 2148 ntTSL 28.01□□□□□ -1.136e-9■■■□□ 18
SUB1P53999 USP39-212ENST00000465514 660 ntTSL 37.03□□□□□ -1.286e-9■■■□□ 18
SUB1P53999 USP39-216ENST00000490193 1028 ntTSL 55.81□□□□□ -1.486e-9■■■□□ 18
SUB1P53999 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC13.97□□□□□ -0.171e-8■■■□□ 18
SUB1P53999 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.391e-8■■■□□ 18
SUB1P53999 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.41e-8■■■□□ 18
SUB1P53999 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC11.98□□□□□ -0.491e-8■■■□□ 18
SUB1P53999 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.03□□□□□ -0.167e-11■■■□□ 18
SUB1P53999 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.177e-11■■■□□ 18
SUB1P53999 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.217e-11■■■□□ 18
SUB1P53999 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC13.63□□□□□ -0.237e-11■■■□□ 18
SUB1P53999 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.337e-11■■■□□ 18
SUB1P53999 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.337e-11■■■□□ 18
SUB1P53999 OPA1-217ENST00000495261 3660 ntTSL 1 (best)0.83□□□□□ -2.287e-11■■■□□ 18
SUB1P53999 RPL15-212ENST00000490223 1785 ntTSL 216.21■□□□□ 0.197e-28■■■□□ 18
SUB1P53999 RPL15-206ENST00000422218 588 ntTSL 413.01□□□□□ -0.337e-28■■■□□ 18
SUB1P53999 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.717e-28■■■□□ 18
SUB1P53999 RPL15-202ENST00000354811 820 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.057e-28■■■□□ 18
SUB1P53999 RPL15-211ENST00000465786 1729 ntTSL 1 (best)8.37□□□□□ -1.077e-28■■■□□ 18
SUB1P53999 RPL15-207ENST00000434031 650 ntTSL 57.43□□□□□ -1.227e-28■■■□□ 18
SUB1P53999 RPL15-203ENST00000412097 562 ntTSL 57.42□□□□□ -1.227e-28■■■□□ 18
SUB1P53999 RPL30-207ENST00000520998 747 ntTSL 210.48□□□□□ -0.733e-22■■■□□ 18
SUB1P53999 RPL30-208ENST00000521112 573 ntTSL 1 (best)10.48□□□□□ -0.733e-22■■■□□ 18
SUB1P53999 NPM1-208ENST00000521672 597 ntTSL 56.45□□□□□ -1.381e-323■■■□□ 18
SUB1P53999 NPM1-211ENST00000523622 247 ntTSL 35.26□□□□□ -1.571e-323■■■□□ 18
SUB1P53999 NPM1-205ENST00000518587 670 ntTSL 24.63□□□□□ -1.671e-323■■■□□ 18
SUB1P53999 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC4.43□□□□□ -1.71e-323■■■□□ 18
SUB1P53999 NPM1-210ENST00000523339 268 ntTSL 22.55□□□□□ -21e-323■■■□□ 18
SUB1P53999 LAMA5-201ENST00000252999 11426 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.722e-6■■■□□ 18
SUB1P53999 RPS18-236ENST00000490191 996 ntTSL 211.26□□□□□ -0.611e-323■■■□□ 18
SUB1P53999 RPS18-230ENST00000439602 613 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.021e-323■■■□□ 18
SUB1P53999 RPS18-233ENST00000474973 589 ntTSL 2 BASIC8.71□□□□□ -1.021e-323■■■□□ 18
SUB1P53999 RPS18-234ENST00000476222 685 ntTSL 1 (best)8.71□□□□□ -1.021e-323■■■□□ 18
SUB1P53999 RPS18-235ENST00000479802 413 ntTSL 28.71□□□□□ -1.021e-323■■■□□ 18
SUB1P53999 RPS18-231ENST00000472218 1109 ntTSL 28.64□□□□□ -1.031e-323■■■□□ 18
SUB1P53999 RPS18-232ENST00000474626 639 ntTSL 37.94□□□□□ -1.141e-323■■■□□ 18
SUB1P53999 RPS18-237ENST00000496813 642 ntTSL 27.94□□□□□ -1.141e-323■■■□□ 18
SUB1P53999 HSPA14-201ENST00000378372 1904 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.059e-7■■■□□ 18
SUB1P53999 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.378e-7■■■□□ 18
SUB1P53999 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC10.23□□□□□ -0.778e-7■■■□□ 18
SUB1P53999 RPL31-201ENST00000264258 1865 ntAPPRIS P3 TSL 1 (best) BASIC8.47□□□□□ -1.058e-7■■■□□ 18
SUB1P53999 RPL31-203ENST00000409028 1110 ntTSL 2 BASIC5.36□□□□□ -1.558e-7■■■□□ 18
SUB1P53999 RPL31-210ENST00000441435 717 ntTSL 24.93□□□□□ -1.628e-7■■■□□ 18
SUB1P53999 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.05□□□□□ -1.768e-7■■■□□ 18
SUB1P53999 RPL31-209ENST00000419276 781 ntTSL 53.84□□□□□ -1.798e-7■■■□□ 18
SUB1P53999 RPL31-204ENST00000409038 817 ntTSL 2 BASIC3.49□□□□□ -1.858e-7■■■□□ 18
SUB1P53999 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC3.49□□□□□ -1.858e-7■■■□□ 18
SUB1P53999 MATR3-227ENST00000618441 4018 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.863e-8■■■□□ 18
SUB1P53999 MATR3-201ENST00000394805 4843 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.283e-8■■■□□ 18
SUB1P53999 MATR3-229ENST00000361059 3970 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.343e-8■■■□□ 18
SUB1P53999 MATR3-232ENST00000502929 4373 ntTSL 2 BASIC6.64□□□□□ -1.353e-8■■■□□ 18
SUB1P53999 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.01□□□□□ -1.613e-8■■■□□ 18
SUB1P53999 MATR3-211ENST00000505625 7306 ntTSL 1 (best)4.8□□□□□ -1.643e-8■■■□□ 18
SUB1P53999 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC4.37□□□□□ -1.713e-8■■■□□ 18
SUB1P53999 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC3.84□□□□□ -1.793e-8■■■□□ 18
SUB1P53999 NAT10-209ENST00000534509 420 ntTSL 37.26□□□□□ -1.252e-7■■■□□ 18
SUB1P53999 SSR2-201ENST00000295702 1116 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.252e-7■■■□□ 17.9
SUB1P53999 SSR2-215ENST00000529008 849 ntTSL 5 BASIC6.43□□□□□ -1.382e-7■■■□□ 17.9
SUB1P53999 SSR2-212ENST00000488179 1712 ntTSL 56.25□□□□□ -1.412e-7■■■□□ 17.9
SUB1P53999 DGUOK-205ENST00000462685 715 ntTSL 39.58□□□□□ -0.884e-6■■■□□ 17.9
SUB1P53999 MRPL18-202ENST00000476826 758 ntTSL 39.78□□□□□ -0.841e-6■■■□□ 17.9
SUB1P53999 SCD-201ENST00000370355 5362 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.099e-9■■■□□ 17.9
SUB1P53999 HIST1H3J-202ENST00000479986 522 ntTSL 216.49■□□□□ 0.233e-6■■■□□ 17.9
SUB1P53999 TCP1-207ENST00000536807 873 ntTSL 210.25□□□□□ -0.772e-20■■■□□ 17.9
SUB1P53999 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC15.47■□□□□ 0.071e-10■■■□□ 17.9
SUB1P53999 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC12.55□□□□□ -0.41e-10■■■□□ 17.9
SUB1P53999 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.431e-10■■■□□ 17.9
SUB1P53999 RPLP0-223ENST00000551783 676 ntTSL 214.18□□□□□ -0.142e-11■■■□□ 17.9
SUB1P53999 RPLP0-227ENST00000552902 869 ntTSL 214.16□□□□□ -0.142e-11■■■□□ 17.9
SUB1P53999 RPLP0-215ENST00000549242 518 ntTSL 29.62□□□□□ -0.872e-11■■■□□ 17.9
SUB1P53999 RPLP0-216ENST00000550296 562 ntTSL 29.44□□□□□ -0.92e-11■■■□□ 17.9
SUB1P53999 RPLP0-217ENST00000550423 561 ntTSL 39.07□□□□□ -0.962e-11■■■□□ 17.9
SUB1P53999 RPLP0-224ENST00000551914 402 ntTSL 38.44□□□□□ -1.062e-11■■■□□ 17.9
SUB1P53999 RPLP0-211ENST00000548495 651 ntTSL 37.51□□□□□ -1.212e-11■■■□□ 17.9
SUB1P53999 RPLP0-212ENST00000548551 543 ntTSL 27.51□□□□□ -1.212e-11■■■□□ 17.9
SUB1P53999 GAS5-211ENST00000432536 959 ntTSL 2 BASIC5.78□□□□□ -1.481e-15■■■□□ 17.9
SUB1P53999 JTB-203ENST00000368589 1216 ntTSL 2 BASIC16.05■□□□□ 0.165e-7■■■□□ 17.9
SUB1P53999 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.55e-7■■■□□ 17.9
SUB1P53999 JTB-202ENST00000356648 1040 ntTSL 2 BASIC11.16□□□□□ -0.625e-7■■■□□ 17.9
SUB1P53999 HBS1L-216ENST00000533274 2102 ntTSL 25.42□□□□□ -1.542e-7■■■□□ 17.9
SUB1P53999 HBS1L-209ENST00000526100 1600 ntTSL 23.77□□□□□ -1.812e-7■■■□□ 17.9
SUB1P53999 SRP14-204ENST00000558720 780 ntTSL 2 BASIC10.18□□□□□ -0.787e-8■■■□□ 17.8
SUB1P53999 H3F3B-203ENST00000586518 1701 nt24.08■■□□□ 1.455e-14■■■□□ 17.8
SUB1P53999 H3F3B-213ENST00000593254 894 ntTSL 59.78□□□□□ -0.845e-14■■■□□ 17.8
SUB1P53999 H3F3B-212ENST00000592643 795 ntTSL 3 BASIC8.92□□□□□ -0.985e-14■■■□□ 17.8
SUB1P53999 H3F3B-210ENST00000591890 783 ntTSL 3 BASIC7.97□□□□□ -1.135e-14■■■□□ 17.8
SUB1P53999 SSR2-211ENST00000484320 1148 ntTSL 511.77□□□□□ -0.531e-7■■■□□ 17.8
SUB1P53999 SSR2-209ENST00000480176 1040 ntTSL 210.43□□□□□ -0.741e-7■■■□□ 17.8
SUB1P53999 SSR2-218ENST00000532074 1008 ntTSL 58.1□□□□□ -1.111e-7■■■□□ 17.8
SUB1P53999 SSR2-213ENST00000496742 825 ntTSL 3 BASIC7.79□□□□□ -1.161e-7■■■□□ 17.8
Retrieved 100 of 11,644 protein–RNA pairs in 87.7 ms