RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 NISCHQ9Y2I1 1504 aa23.83■■□□□ 1.41
USP39-210ENST00000459775 ABCC9O60706 1549 aa21.06■□□□□ 0.96
USP39-210ENST00000459775 CCDC180Q9P1Z9 1646 aa20.94■□□□□ 0.94
USP39-210ENST00000459775 RB1CC1Q8TDY2 1594 aa20.06■□□□□ 0.8
USP39-210ENST00000459775 DCAF8L2P0C7V8 631 aa20.01■□□□□ 0.79
USP39-210ENST00000459775 DNAJC5BQ9UF47 199 aa19.96■□□□□ 0.79
USP39-210ENST00000459775 ZCCHC6Q5VYS8 1495 aaKnown RBP19.94■□□□□ 0.78
USP39-210ENST00000459775 NACADO15069 1562 aa19.85■□□□□ 0.77
USP39-210ENST00000459775 DCAF1Q9Y4B6 1507 aa19.58■□□□□ 0.73
USP39-210ENST00000459775 MYO15BQ96JP2 1530 aa19.52■□□□□ 0.72
USP39-210ENST00000459775 UNC13AQ9UPW8 1703 aa19.49■□□□□ 0.71
USP39-210ENST00000459775 SHROOM4Q9ULL8 1493 aa19.48■□□□□ 0.71
USP39-210ENST00000459775 PABPN1Q86U42 306 aaKnown RBP eCLIP19.45■□□□□ 0.7
USP39-210ENST00000459775 BICRAQ9NZM4 1560 aa19.38■□□□□ 0.69
USP39-210ENST00000459775 SCRIBQ14160 1630 aa19.26■□□□□ 0.67
USP39-210ENST00000459775 CECR2Q9BXF3 1484 aa19.09■□□□□ 0.65
USP39-210ENST00000459775 CC2D2AQ9P2K1 1620 aa19.08■□□□□ 0.64
USP39-210ENST00000459775 EIF4G1Q04637 1599 aaKnown RBP18.98■□□□□ 0.63
USP39-210ENST00000459775 DNAJC5Q9H3Z4 198 aa18.77■□□□□ 0.6
USP39-210ENST00000459775 SUPT5HO00267 1087 aaKnown RBP18.58■□□□□ 0.56
USP39-210ENST00000459775 CUX2O14529 1486 aa18.51■□□□□ 0.55
USP39-210ENST00000459775 MROH2BQ7Z745 1585 aa18.47■□□□□ 0.55
USP39-210ENST00000459775 RSF1Q96T23 1441 aaPredicted RBP18.44■□□□□ 0.54
USP39-210ENST00000459775 BAZ1AQ9NRL2 1556 aaPredicted RBP18.37■□□□□ 0.53
USP39-210ENST00000459775 SMARCA4P51532 1647 aa18.36■□□□□ 0.53
USP39-210ENST00000459775 ERCC6Q03468 1493 aa18.3■□□□□ 0.52
USP39-210ENST00000459775 WIZO95785 1651 aa18.29■□□□□ 0.52
USP39-210ENST00000459775 NCAPD3P42695 1498 aa18.27■□□□□ 0.52
USP39-210ENST00000459775 ATAD2BQ9ULI0 1458 aa18.18■□□□□ 0.5
USP39-210ENST00000459775 HMGXB3Q12766 1538 aa18.16■□□□□ 0.5
USP39-210ENST00000459775 SMARCA2P51531 1590 aa18.14■□□□□ 0.49
USP39-210ENST00000459775 PEG3Q9GZU2 1588 aa18.08■□□□□ 0.49
USP39-210ENST00000459775 BAZ1BQ9UIG0 1483 aaKnown RBP18.04■□□□□ 0.48
USP39-210ENST00000459775 TOP2AP11388 1531 aaKnown RBP18.01■□□□□ 0.47
USP39-210ENST00000459775 THOC2Q8NI27 1593 aaKnown RBP18■□□□□ 0.47
USP39-210ENST00000459775 LAMC3Q9Y6N6 1575 aa17.97■□□□□ 0.47
USP39-210ENST00000459775 NESP48681 1621 aa17.95■□□□□ 0.46
USP39-210ENST00000459775 SLC24A1O60721 1099 aa17.93■□□□□ 0.46
USP39-210ENST00000459775 CCDC88BA6NC98 1476 aa17.91■□□□□ 0.46
USP39-210ENST00000459775 PDS5BQ9NTI5 1447 aa17.85■□□□□ 0.45
USP39-210ENST00000459775 KIF21AQ7Z4S6 1674 aa17.79■□□□□ 0.44
USP39-210ENST00000459775 MRC2Q9UBG0 1479 aa17.71■□□□□ 0.43
USP39-210ENST00000459775 WDR62O43379 1518 aa17.69■□□□□ 0.42
USP39-210ENST00000459775 TRIM41Q8WV44 630 aa17.68■□□□□ 0.42
USP39-210ENST00000459775 CADPSQ9ULU8 1353 aa17.66■□□□□ 0.42
USP39-210ENST00000459775 CHIC1Q5VXU3 224 aa17.56■□□□□ 0.4
USP39-210ENST00000459775 CFTRP13569 1480 aa17.56■□□□□ 0.4
USP39-210ENST00000459775 CEP164Q9UPV0 1460 aa17.55■□□□□ 0.4
USP39-210ENST00000459775 ABCC8Q09428 1581 aa17.49■□□□□ 0.39
USP39-210ENST00000459775 OSCARQ8IYS5 282 aa17.46■□□□□ 0.39
USP39-210ENST00000459775 FANCD2Q9BXW9 1451 aa17.45■□□□□ 0.38
USP39-210ENST00000459775 WRNQ14191 1432 aaPredicted RBP eCLIP17.34■□□□□ 0.37
USP39-210ENST00000459775 PRDM2Q13029 1718 aa17.3■□□□□ 0.36
USP39-210ENST00000459775 URB2Q14146 1524 aaKnown RBP17.3■□□□□ 0.36
USP39-210ENST00000459775 RIMBP3CA6NJZ7 1639 aa17.3■□□□□ 0.36
USP39-210ENST00000459775 RIMBP3BA6NNM3 1639 aa17.3■□□□□ 0.36
USP39-210ENST00000459775 RIMBP3Q9UFD9 1639 aa17.3■□□□□ 0.36
USP39-210ENST00000459775 SYNJ1O43426 1573 aa17.3■□□□□ 0.36
USP39-210ENST00000459775 CUX1P39880 1505 aa17.28■□□□□ 0.36
USP39-210ENST00000459775 IFT140Q96RY7 1462 aa17.24■□□□□ 0.35
USP39-210ENST00000459775 ARHGEF11O15085 1522 aa17.21■□□□□ 0.34
USP39-210ENST00000459775 MYT1Q01538 1121 aa17.2■□□□□ 0.34
USP39-210ENST00000459775 FAM9AQ8IZU1 332 aaPredicted RBP17.2■□□□□ 0.34
USP39-210ENST00000459775 TOP2BQ02880 1626 aa17.17■□□□□ 0.34
USP39-210ENST00000459775 TOPBP1Q92547 1522 aa17.17■□□□□ 0.34
USP39-210ENST00000459775 BIVM-ERCC5R4GMW8 1640 aa17.13■□□□□ 0.33
USP39-210ENST00000459775 DNMBPQ6XZF7 1577 aa17.12■□□□□ 0.33
USP39-210ENST00000459775 FGD5Q6ZNL6 1462 aa17.12■□□□□ 0.33
USP39-210ENST00000459775 SOGA1O94964 1423 aa17.12■□□□□ 0.33
USP39-210ENST00000459775 RUSC2Q8N2Y8 1516 aa17.1■□□□□ 0.33
USP39-210ENST00000459775 ZNF608Q9ULD9 1512 aaPredicted RBP17.1■□□□□ 0.33
USP39-210ENST00000459775 RAD54L2Q9Y4B4 1467 aa17.09■□□□□ 0.33
USP39-210ENST00000459775 EIF4G3O43432 1585 aaKnown RBP17.09■□□□□ 0.33
USP39-210ENST00000459775 POLA1P09884 1462 aaPredicted RBP17.07■□□□□ 0.32
USP39-210ENST00000459775 EHMT2Q96KQ7 1210 aa17.07■□□□□ 0.32
USP39-210ENST00000459775 TTBK1Q5TCY1 1321 aaPredicted RBP17.02■□□□□ 0.32
USP39-210ENST00000459775 CHD1O14646 1710 aa17.01■□□□□ 0.31
USP39-210ENST00000459775 ARAP1Q96P48 1450 aa16.99■□□□□ 0.31
USP39-210ENST00000459775 LOC105371045A0A1W2PR82 267 aa16.99■□□□□ 0.31
USP39-210ENST00000459775 CYB5RLQ6IPT4 315 aa16.97■□□□□ 0.31
USP39-210ENST00000459775 TARBP1Q13395 1621 aaKnown RBP16.97■□□□□ 0.31
USP39-210ENST00000459775 TDRD9Q8NDG6 1382 aaKnown RBP16.97■□□□□ 0.31
USP39-210ENST00000459775 WDR97A6NE52 1622 aa16.97■□□□□ 0.31
USP39-210ENST00000459775 PELP1Q8IZL8 1130 aaKnown RBP16.96■□□□□ 0.31
USP39-210ENST00000459775 TRHP20396 242 aaPredicted RBP16.93■□□□□ 0.3
USP39-210ENST00000459775 CSRNP3Q8WYN3 585 aa16.91■□□□□ 0.3
USP39-210ENST00000459775 ABCA10Q8WWZ4 1543 aa16.91■□□□□ 0.3
USP39-210ENST00000459775 AQRO60306 1485 aaKnown RBP eCLIP16.9■□□□□ 0.32e-6■■■■□ 20.3
USP39-210ENST00000459775 KIF27Q86VH2 1401 aa16.89■□□□□ 0.3
USP39-210ENST00000459775 CLASP1Q7Z460 1538 aa16.86■□□□□ 0.29
USP39-210ENST00000459775 IGF1RP08069 1367 aa16.84■□□□□ 0.29
USP39-210ENST00000459775 EEA1Q15075 1411 aa16.82■□□□□ 0.28
USP39-210ENST00000459775 GAPVD1Q14C86 1478 aa16.81■□□□□ 0.28
USP39-210ENST00000459775 MAGI1Q96QZ7 1491 aaPredicted RBP16.81■□□□□ 0.28
USP39-210ENST00000459775 FBLN2P98095 1184 aa16.81■□□□□ 0.28
USP39-210ENST00000459775 AEBP2Q6ZN18 517 aaPredicted RBP16.79■□□□□ 0.28
USP39-210ENST00000459775 SNAPC4Q5SXM2 1469 aa16.78■□□□□ 0.28
USP39-210ENST00000459775 ABCA5Q8WWZ7 1642 aa16.78■□□□□ 0.28
USP39-210ENST00000459775 RAPGEF2Q9Y4G8 1499 aa16.75■□□□□ 0.27
USP39-210ENST00000459775 GRIN2BQ13224 1484 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms