RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 NISCHQ9Y2I1 1504 aa41.59■■■■■ 4.25
USP39-201ENST00000323701 CCDC180Q9P1Z9 1646 aa36.06■■■■□ 3.36
USP39-201ENST00000323701 ZCCHC6Q5VYS8 1495 aaKnown RBP34.95■■■■□ 3.19
USP39-201ENST00000323701 DCAF8L2P0C7V8 631 aa34.49■■■■□ 3.11
USP39-201ENST00000323701 ABCC9O60706 1549 aa34.27■■■■□ 3.08
USP39-201ENST00000323701 DCAF1Q9Y4B6 1507 aa34.25■■■■□ 3.07
USP39-201ENST00000323701 SHROOM4Q9ULL8 1493 aa34.23■■■■□ 3.07
USP39-201ENST00000323701 MYO15BQ96JP2 1530 aa33.77■■■■□ 3
USP39-201ENST00000323701 NACADO15069 1562 aa33.59■■■□□ 2.97
USP39-201ENST00000323701 SCRIBQ14160 1630 aa33.4■■■□□ 2.94
USP39-201ENST00000323701 RB1CC1Q8TDY2 1594 aa33.29■■■□□ 2.92
USP39-201ENST00000323701 SUPT5HO00267 1087 aaKnown RBP32.94■■■□□ 2.86
USP39-201ENST00000323701 UNC13AQ9UPW8 1703 aa32.76■■■□□ 2.84
USP39-201ENST00000323701 CECR2Q9BXF3 1484 aa32.46■■■□□ 2.79
USP39-201ENST00000323701 BICRAQ9NZM4 1560 aa32.45■■■□□ 2.79
USP39-201ENST00000323701 PABPN1Q86U42 306 aaKnown RBP eCLIP32.42■■■□□ 2.78
USP39-201ENST00000323701 RSF1Q96T23 1441 aaPredicted RBP32.37■■■□□ 2.77
USP39-201ENST00000323701 MROH2BQ7Z745 1585 aa32.23■■■□□ 2.75
USP39-201ENST00000323701 BAZ1AQ9NRL2 1556 aaPredicted RBP32.04■■■□□ 2.72
USP39-201ENST00000323701 WIZO95785 1651 aa31.97■■■□□ 2.71
USP39-201ENST00000323701 SMARCA4P51532 1647 aa31.94■■■□□ 2.7
USP39-201ENST00000323701 CHIC1Q5VXU3 224 aa31.55■■■□□ 2.64
USP39-201ENST00000323701 TOP2AP11388 1531 aaKnown RBP31.51■■■□□ 2.63
USP39-201ENST00000323701 PEG3Q9GZU2 1588 aa31.48■■■□□ 2.63
USP39-201ENST00000323701 ATAD2BQ9ULI0 1458 aa31.42■■■□□ 2.62
USP39-201ENST00000323701 EIF4G1Q04637 1599 aaKnown RBP31.41■■■□□ 2.62
USP39-201ENST00000323701 CCDC88BA6NC98 1476 aa31.3■■■□□ 2.6
USP39-201ENST00000323701 SMARCA2P51531 1590 aa31.29■■■□□ 2.6
USP39-201ENST00000323701 BAZ1BQ9UIG0 1483 aaKnown RBP31.21■■■□□ 2.59
USP39-201ENST00000323701 NCAPD3P42695 1498 aa31.08■■■□□ 2.57
USP39-201ENST00000323701 HMGXB3Q12766 1538 aa30.99■■■□□ 2.55
USP39-201ENST00000323701 CC2D2AQ9P2K1 1620 aa30.95■■■□□ 2.54
USP39-201ENST00000323701 TRIM41Q8WV44 630 aa30.86■■■□□ 2.53
USP39-201ENST00000323701 ABCC8Q09428 1581 aa30.74■■■□□ 2.51
USP39-201ENST00000323701 LOC105371045A0A1W2PR82 267 aa30.47■■■□□ 2.47
USP39-201ENST00000323701 FAM9AQ8IZU1 332 aaPredicted RBP30.45■■■□□ 2.47
USP39-201ENST00000323701 DNAJC5BQ9UF47 199 aa30.45■■■□□ 2.46
USP39-201ENST00000323701 CFTRP13569 1480 aa30.44■■■□□ 2.46
USP39-201ENST00000323701 WRNQ14191 1432 aaPredicted RBP eCLIP30.41■■■□□ 2.46
USP39-201ENST00000323701 SYNJ1O43426 1573 aa30.35■■■□□ 2.45
USP39-201ENST00000323701 CADPSQ9ULU8 1353 aa30.32■■■□□ 2.44
USP39-201ENST00000323701 SOGA1O94964 1423 aa30.2■■■□□ 2.42
USP39-201ENST00000323701 PRDM2Q13029 1718 aa30.18■■■□□ 2.42
USP39-201ENST00000323701 NESP48681 1621 aa30.17■■■□□ 2.42
USP39-201ENST00000323701 EHMT2Q96KQ7 1210 aa30.13■■■□□ 2.41
USP39-201ENST00000323701 RUSC2Q8N2Y8 1516 aa30.12■■■□□ 2.41
USP39-201ENST00000323701 TOP2BQ02880 1626 aa30.12■■■□□ 2.41
USP39-201ENST00000323701 CUX1P39880 1505 aa30.1■■■□□ 2.41
USP39-201ENST00000323701 BIVM-ERCC5R4GMW8 1640 aa30.06■■■□□ 2.4
USP39-201ENST00000323701 FANCD2Q9BXW9 1451 aa30■■■□□ 2.39
USP39-201ENST00000323701 LAMC3Q9Y6N6 1575 aa29.94■■■□□ 2.38
USP39-201ENST00000323701 EEA1Q15075 1411 aa29.88■■■□□ 2.37
USP39-201ENST00000323701 CSRNP3Q8WYN3 585 aa29.88■■■□□ 2.37
USP39-201ENST00000323701 CEP164Q9UPV0 1460 aa29.75■■■□□ 2.35
USP39-201ENST00000323701 FGD5Q6ZNL6 1462 aa29.73■■■□□ 2.35
USP39-201ENST00000323701 PDS5BQ9NTI5 1447 aa29.73■■■□□ 2.35
USP39-201ENST00000323701 KIF21AQ7Z4S6 1674 aa29.7■■■□□ 2.35
USP39-201ENST00000323701 TOPBP1Q92547 1522 aa29.69■■■□□ 2.34
USP39-201ENST00000323701 DNMBPQ6XZF7 1577 aa29.69■■■□□ 2.34
USP39-201ENST00000323701 URB2Q14146 1524 aaKnown RBP29.67■■■□□ 2.34
USP39-201ENST00000323701 KIF27Q86VH2 1401 aa29.58■■■□□ 2.33
USP39-201ENST00000323701 POLA1P09884 1462 aaPredicted RBP29.58■■■□□ 2.33
USP39-201ENST00000323701 GOLGA3Q08378 1498 aa29.57■■■□□ 2.32
USP39-201ENST00000323701 KIF21BO75037 1637 aa29.57■■■□□ 2.32
USP39-201ENST00000323701 RAD54L2Q9Y4B4 1467 aa29.56■■■□□ 2.32
USP39-201ENST00000323701 CUX2O14529 1486 aa29.56■■■□□ 2.32
USP39-201ENST00000323701 UBTFP17480 764 aaKnown RBP29.54■■■□□ 2.32
USP39-201ENST00000323701 RAPGEF2Q9Y4G8 1499 aa29.54■■■□□ 2.32
USP39-201ENST00000323701 TNIKQ9UKE5 1360 aa29.52■■■□□ 2.32
USP39-201ENST00000323701 PRXQ9BXM0 1461 aa29.47■■■□□ 2.31
USP39-201ENST00000323701 CEP162Q5TB80 1403 aa29.44■■■□□ 2.3
USP39-201ENST00000323701 IGF1RP08069 1367 aa29.41■■■□□ 2.3
USP39-201ENST00000323701 ABCA10Q8WWZ4 1543 aa29.41■■■□□ 2.3
USP39-201ENST00000323701 MRC2Q9UBG0 1479 aa29.37■■■□□ 2.29
USP39-201ENST00000323701 ERICH3Q5RHP9 1530 aa29.33■■■□□ 2.29
USP39-201ENST00000323701 WDR97A6NE52 1622 aa29.3■■■□□ 2.28
USP39-201ENST00000323701 TDRD9Q8NDG6 1382 aaKnown RBP29.27■■■□□ 2.28
USP39-201ENST00000323701 ERCC6Q03468 1493 aa29.26■■■□□ 2.28
USP39-201ENST00000323701 TARBP1Q13395 1621 aaKnown RBP29.24■■■□□ 2.27
USP39-201ENST00000323701 CARMIL1Q5VZK9 1371 aa29.23■■■□□ 2.27
USP39-201ENST00000323701 WDR62O43379 1518 aa29.22■■■□□ 2.27
USP39-201ENST00000323701 RANGAP1P46060 587 aaPredicted RBP29.19■■■□□ 2.26
USP39-201ENST00000323701 ABCA5Q8WWZ7 1642 aa29.17■■■□□ 2.26
USP39-201ENST00000323701 CLIP1P30622 1438 aa29.16■■■□□ 2.26
USP39-201ENST00000323701 THOC2Q8NI27 1593 aaKnown RBP29.15■■■□□ 2.26
USP39-201ENST00000323701 GAPVD1Q14C86 1478 aa29.13■■■□□ 2.25
USP39-201ENST00000323701 PCGF6Q9BYE7 350 aa29.11■■■□□ 2.25
USP39-201ENST00000323701 PPARGC1BQ86YN6 1023 aaKnown RBP29.09■■■□□ 2.25
USP39-201ENST00000323701 AQRO60306 1485 aaKnown RBP eCLIP29.06■■■□□ 2.242e-6■■■■□ 20.3
USP39-201ENST00000323701 ZNF608Q9ULD9 1512 aaPredicted RBP29.02■■■□□ 2.24
USP39-201ENST00000323701 CUL7Q14999 1698 aa29.02■■■□□ 2.24
USP39-201ENST00000323701 IFT140Q96RY7 1462 aa29■■■□□ 2.23
USP39-201ENST00000323701 TRIM26Q12899 539 aaPredicted RBP28.94■■■□□ 2.22
USP39-201ENST00000323701 PBRM1Q86U86 1689 aa28.92■■■□□ 2.22
USP39-201ENST00000323701 ARAP1Q96P48 1450 aa28.91■■■□□ 2.22
USP39-201ENST00000323701 VPS8Q8N3P4 1428 aa28.89■■■□□ 2.22
USP39-201ENST00000323701 ARHGAP35Q9NRY4 1499 aa28.88■■■□□ 2.21
USP39-201ENST00000323701 GRIN2BQ13224 1484 aa28.84■■■□□ 2.21
USP39-201ENST00000323701 EIF4G3O43432 1585 aaKnown RBP28.82■■■□□ 2.2
USP39-201ENST00000323701 TTBK1Q5TCY1 1321 aaPredicted RBP28.82■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms