RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 NISCHQ9Y2I1 1504 aa32.32■■■□□ 2.76
USP39-207ENST00000450066 CCDC180Q9P1Z9 1646 aa28.17■■■□□ 2.1
USP39-207ENST00000450066 ZCCHC6Q5VYS8 1495 aaKnown RBP27.15■■□□□ 1.94
USP39-207ENST00000450066 DCAF1Q9Y4B6 1507 aa26.75■■□□□ 1.87
USP39-207ENST00000450066 DCAF8L2P0C7V8 631 aa26.66■■□□□ 1.86
USP39-207ENST00000450066 ABCC9O60706 1549 aa26.61■■□□□ 1.85
USP39-207ENST00000450066 MYO15BQ96JP2 1530 aa26.44■■□□□ 1.82
USP39-207ENST00000450066 SHROOM4Q9ULL8 1493 aa26.31■■□□□ 1.8
USP39-207ENST00000450066 NACADO15069 1562 aa26.25■■□□□ 1.79
USP39-207ENST00000450066 RB1CC1Q8TDY2 1594 aa26.02■■□□□ 1.76
USP39-207ENST00000450066 SCRIBQ14160 1630 aa25.88■■□□□ 1.73
USP39-207ENST00000450066 UNC13AQ9UPW8 1703 aa25.45■■□□□ 1.66
USP39-207ENST00000450066 SUPT5HO00267 1087 aaKnown RBP25.34■■□□□ 1.65
USP39-207ENST00000450066 BICRAQ9NZM4 1560 aa25.22■■□□□ 1.63
USP39-207ENST00000450066 PABPN1Q86U42 306 aaKnown RBP eCLIP25.1■■□□□ 1.61
USP39-207ENST00000450066 CECR2Q9BXF3 1484 aa25.09■■□□□ 1.61
USP39-207ENST00000450066 RSF1Q96T23 1441 aaPredicted RBP25.08■■□□□ 1.6
USP39-207ENST00000450066 BAZ1AQ9NRL2 1556 aaPredicted RBP24.96■■□□□ 1.59
USP39-207ENST00000450066 MROH2BQ7Z745 1585 aa24.95■■□□□ 1.58
USP39-207ENST00000450066 SMARCA4P51532 1647 aa24.83■■□□□ 1.57
USP39-207ENST00000450066 WIZO95785 1651 aa24.73■■□□□ 1.55
USP39-207ENST00000450066 PEG3Q9GZU2 1588 aa24.55■■□□□ 1.52
USP39-207ENST00000450066 TOP2AP11388 1531 aaKnown RBP24.5■■□□□ 1.51
USP39-207ENST00000450066 EIF4G1Q04637 1599 aaKnown RBP24.46■■□□□ 1.51
USP39-207ENST00000450066 ATAD2BQ9ULI0 1458 aa24.43■■□□□ 1.5
USP39-207ENST00000450066 SMARCA2P51531 1590 aa24.42■■□□□ 1.5
USP39-207ENST00000450066 BAZ1BQ9UIG0 1483 aaKnown RBP24.29■■□□□ 1.48
USP39-207ENST00000450066 CHIC1Q5VXU3 224 aa24.28■■□□□ 1.48
USP39-207ENST00000450066 CCDC88BA6NC98 1476 aa24.26■■□□□ 1.47
USP39-207ENST00000450066 NCAPD3P42695 1498 aa24.24■■□□□ 1.47
USP39-207ENST00000450066 HMGXB3Q12766 1538 aa24.2■■□□□ 1.46
USP39-207ENST00000450066 CC2D2AQ9P2K1 1620 aa24.09■■□□□ 1.45
USP39-207ENST00000450066 TRIM41Q8WV44 630 aa23.85■■□□□ 1.41
USP39-207ENST00000450066 ABCC8Q09428 1581 aa23.72■■□□□ 1.39
USP39-207ENST00000450066 CFTRP13569 1480 aa23.7■■□□□ 1.38
USP39-207ENST00000450066 CADPSQ9ULU8 1353 aa23.61■■□□□ 1.37
USP39-207ENST00000450066 WRNQ14191 1432 aaPredicted RBP eCLIP23.6■■□□□ 1.37
USP39-207ENST00000450066 PRDM2Q13029 1718 aa23.54■■□□□ 1.36
USP39-207ENST00000450066 SYNJ1O43426 1573 aa23.48■■□□□ 1.35
USP39-207ENST00000450066 DNAJC5BQ9UF47 199 aa23.47■■□□□ 1.35
USP39-207ENST00000450066 TOP2BQ02880 1626 aa23.41■■□□□ 1.34
USP39-207ENST00000450066 LAMC3Q9Y6N6 1575 aa23.4■■□□□ 1.34
USP39-207ENST00000450066 FAM9AQ8IZU1 332 aaPredicted RBP23.37■■□□□ 1.33
USP39-207ENST00000450066 BIVM-ERCC5R4GMW8 1640 aa23.37■■□□□ 1.33
USP39-207ENST00000450066 NESP48681 1621 aa23.36■■□□□ 1.33
USP39-207ENST00000450066 FANCD2Q9BXW9 1451 aa23.34■■□□□ 1.33
USP39-207ENST00000450066 LOC105371045A0A1W2PR82 267 aa23.34■■□□□ 1.33
USP39-207ENST00000450066 CUX1P39880 1505 aa23.33■■□□□ 1.33
USP39-207ENST00000450066 SOGA1O94964 1423 aa23.29■■□□□ 1.32
USP39-207ENST00000450066 EEA1Q15075 1411 aa23.29■■□□□ 1.32
USP39-207ENST00000450066 PDS5BQ9NTI5 1447 aa23.23■■□□□ 1.31
USP39-207ENST00000450066 RUSC2Q8N2Y8 1516 aa23.19■■□□□ 1.3
USP39-207ENST00000450066 CEP164Q9UPV0 1460 aa23.18■■□□□ 1.3
USP39-207ENST00000450066 CSRNP3Q8WYN3 585 aa23.15■■□□□ 1.3
USP39-207ENST00000450066 DNMBPQ6XZF7 1577 aa23.13■■□□□ 1.29
USP39-207ENST00000450066 TOPBP1Q92547 1522 aa23.08■■□□□ 1.29
USP39-207ENST00000450066 FGD5Q6ZNL6 1462 aa23.07■■□□□ 1.28
USP39-207ENST00000450066 KIF21AQ7Z4S6 1674 aa23.07■■□□□ 1.28
USP39-207ENST00000450066 URB2Q14146 1524 aaKnown RBP23.04■■□□□ 1.28
USP39-207ENST00000450066 EHMT2Q96KQ7 1210 aa23.02■■□□□ 1.28
USP39-207ENST00000450066 KIF27Q86VH2 1401 aa23.01■■□□□ 1.27
USP39-207ENST00000450066 POLA1P09884 1462 aaPredicted RBP22.98■■□□□ 1.27
USP39-207ENST00000450066 KIF21BO75037 1637 aa22.96■■□□□ 1.27
USP39-207ENST00000450066 GOLGA3Q08378 1498 aa22.94■■□□□ 1.26
USP39-207ENST00000450066 CUX2O14529 1486 aa22.93■■□□□ 1.26
USP39-207ENST00000450066 MRC2Q9UBG0 1479 aa22.91■■□□□ 1.26
USP39-207ENST00000450066 ABCA10Q8WWZ4 1543 aa22.9■■□□□ 1.26
USP39-207ENST00000450066 TNIKQ9UKE5 1360 aa22.88■■□□□ 1.25
USP39-207ENST00000450066 RAD54L2Q9Y4B4 1467 aa22.88■■□□□ 1.25
USP39-207ENST00000450066 PRXQ9BXM0 1461 aa22.86■■□□□ 1.25
USP39-207ENST00000450066 UBTFP17480 764 aaKnown RBP22.83■■□□□ 1.25
USP39-207ENST00000450066 ERCC6Q03468 1493 aa22.83■■□□□ 1.25
USP39-207ENST00000450066 RAPGEF2Q9Y4G8 1499 aa22.82■■□□□ 1.24
USP39-207ENST00000450066 ERICH3Q5RHP9 1530 aa22.82■■□□□ 1.24
USP39-207ENST00000450066 IGF1RP08069 1367 aa22.81■■□□□ 1.24
USP39-207ENST00000450066 WDR62O43379 1518 aa22.8■■□□□ 1.24
USP39-207ENST00000450066 WDR97A6NE52 1622 aa22.79■■□□□ 1.24
USP39-207ENST00000450066 CEP162Q5TB80 1403 aa22.75■■□□□ 1.23
USP39-207ENST00000450066 TARBP1Q13395 1621 aaKnown RBP22.74■■□□□ 1.23
USP39-207ENST00000450066 THOC2Q8NI27 1593 aaKnown RBP22.71■■□□□ 1.23
USP39-207ENST00000450066 ABCA5Q8WWZ7 1642 aa22.69■■□□□ 1.22
USP39-207ENST00000450066 CARMIL1Q5VZK9 1371 aa22.68■■□□□ 1.22
USP39-207ENST00000450066 TDRD9Q8NDG6 1382 aaKnown RBP22.67■■□□□ 1.22
USP39-207ENST00000450066 GAPVD1Q14C86 1478 aa22.65■■□□□ 1.22
USP39-207ENST00000450066 IFT140Q96RY7 1462 aa22.65■■□□□ 1.22
USP39-207ENST00000450066 CUL7Q14999 1698 aa22.62■■□□□ 1.21
USP39-207ENST00000450066 CLIP1P30622 1438 aa22.57■■□□□ 1.2
USP39-207ENST00000450066 AQRO60306 1485 aaKnown RBP eCLIP22.53■■□□□ 1.22e-6■■■■□ 20.3
USP39-207ENST00000450066 ZNF608Q9ULD9 1512 aaPredicted RBP22.5■■□□□ 1.19
USP39-207ENST00000450066 PBRM1Q86U86 1689 aa22.49■■□□□ 1.19
USP39-207ENST00000450066 GRIN2BQ13224 1484 aa22.48■■□□□ 1.19
USP39-207ENST00000450066 EIF4G3O43432 1585 aaKnown RBP22.42■■□□□ 1.18
USP39-207ENST00000450066 RANGAP1P46060 587 aaPredicted RBP22.42■■□□□ 1.18
USP39-207ENST00000450066 FHAD1B1AJZ9 1412 aa22.42■■□□□ 1.18
USP39-207ENST00000450066 ADAMTS12P58397 1594 aa22.39■■□□□ 1.17
USP39-207ENST00000450066 VPS8Q8N3P4 1428 aa22.38■■□□□ 1.17
USP39-207ENST00000450066 CTTNBP2Q8WZ74 1663 aa22.35■■□□□ 1.17
USP39-207ENST00000450066 ARHGAP35Q9NRY4 1499 aa22.35■■□□□ 1.17
USP39-207ENST00000450066 ARAP1Q96P48 1450 aa22.34■■□□□ 1.17
USP39-207ENST00000450066 SNAPC4Q5SXM2 1469 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms