RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 NISCHQ9Y2I1 1504 aa32.98■■■□□ 2.87
USP39-220ENST00000613444 CCDC180Q9P1Z9 1646 aa28.88■■■□□ 2.21
USP39-220ENST00000613444 ZCCHC6Q5VYS8 1495 aaKnown RBP27.68■■■□□ 2.02
USP39-220ENST00000613444 ABCC9O60706 1549 aa27.41■■□□□ 1.98
USP39-220ENST00000613444 DCAF1Q9Y4B6 1507 aa27.3■■□□□ 1.96
USP39-220ENST00000613444 DCAF8L2P0C7V8 631 aa27.15■■□□□ 1.94
USP39-220ENST00000613444 MYO15BQ96JP2 1530 aa27.05■■□□□ 1.92
USP39-220ENST00000613444 NACADO15069 1562 aa26.92■■□□□ 1.9
USP39-220ENST00000613444 RB1CC1Q8TDY2 1594 aa26.72■■□□□ 1.87
USP39-220ENST00000613444 SHROOM4Q9ULL8 1493 aa26.67■■□□□ 1.86
USP39-220ENST00000613444 SCRIBQ14160 1630 aa26.48■■□□□ 1.83
USP39-220ENST00000613444 UNC13AQ9UPW8 1703 aa26.28■■□□□ 1.8
USP39-220ENST00000613444 BICRAQ9NZM4 1560 aa25.98■■□□□ 1.75
USP39-220ENST00000613444 PABPN1Q86U42 306 aaKnown RBP eCLIP25.79■■□□□ 1.72
USP39-220ENST00000613444 CECR2Q9BXF3 1484 aa25.65■■□□□ 1.7
USP39-220ENST00000613444 SUPT5HO00267 1087 aaKnown RBP25.54■■□□□ 1.68
USP39-220ENST00000613444 RSF1Q96T23 1441 aaPredicted RBP25.5■■□□□ 1.67
USP39-220ENST00000613444 MROH2BQ7Z745 1585 aa25.47■■□□□ 1.67
USP39-220ENST00000613444 BAZ1AQ9NRL2 1556 aaPredicted RBP25.47■■□□□ 1.67
USP39-220ENST00000613444 SMARCA4P51532 1647 aa25.41■■□□□ 1.66
USP39-220ENST00000613444 WIZO95785 1651 aa25.27■■□□□ 1.64
USP39-220ENST00000613444 EIF4G1Q04637 1599 aaKnown RBP25.17■■□□□ 1.62
USP39-220ENST00000613444 PEG3Q9GZU2 1588 aa25.14■■□□□ 1.61
USP39-220ENST00000613444 ATAD2BQ9ULI0 1458 aa25.02■■□□□ 1.6
USP39-220ENST00000613444 SMARCA2P51531 1590 aa24.99■■□□□ 1.59
USP39-220ENST00000613444 TOP2AP11388 1531 aaKnown RBP24.98■■□□□ 1.59
USP39-220ENST00000613444 CC2D2AQ9P2K1 1620 aa24.85■■□□□ 1.57
USP39-220ENST00000613444 NCAPD3P42695 1498 aa24.84■■□□□ 1.57
USP39-220ENST00000613444 BAZ1BQ9UIG0 1483 aaKnown RBP24.83■■□□□ 1.57
USP39-220ENST00000613444 HMGXB3Q12766 1538 aa24.8■■□□□ 1.56
USP39-220ENST00000613444 CCDC88BA6NC98 1476 aa24.72■■□□□ 1.55
USP39-220ENST00000613444 CHIC1Q5VXU3 224 aa24.4■■□□□ 1.5
USP39-220ENST00000613444 DNAJC5BQ9UF47 199 aa24.39■■□□□ 1.5
USP39-220ENST00000613444 CFTRP13569 1480 aa24.24■■□□□ 1.47
USP39-220ENST00000613444 CADPSQ9ULU8 1353 aa24.17■■□□□ 1.46
USP39-220ENST00000613444 PRDM2Q13029 1718 aa24.16■■□□□ 1.46
USP39-220ENST00000613444 ABCC8Q09428 1581 aa24.13■■□□□ 1.45
USP39-220ENST00000613444 NESP48681 1621 aa24.04■■□□□ 1.44
USP39-220ENST00000613444 LAMC3Q9Y6N6 1575 aa24.03■■□□□ 1.44
USP39-220ENST00000613444 TRIM41Q8WV44 630 aa24.03■■□□□ 1.44
USP39-220ENST00000613444 WRNQ14191 1432 aaPredicted RBP eCLIP23.97■■□□□ 1.43
USP39-220ENST00000613444 SYNJ1O43426 1573 aa23.94■■□□□ 1.42
USP39-220ENST00000613444 FANCD2Q9BXW9 1451 aa23.9■■□□□ 1.42
USP39-220ENST00000613444 TOP2BQ02880 1626 aa23.85■■□□□ 1.41
USP39-220ENST00000613444 BIVM-ERCC5R4GMW8 1640 aa23.85■■□□□ 1.41
USP39-220ENST00000613444 CUX1P39880 1505 aa23.83■■□□□ 1.41
USP39-220ENST00000613444 PDS5BQ9NTI5 1447 aa23.8■■□□□ 1.4
USP39-220ENST00000613444 KIF21AQ7Z4S6 1674 aa23.78■■□□□ 1.4
USP39-220ENST00000613444 CEP164Q9UPV0 1460 aa23.76■■□□□ 1.39
USP39-220ENST00000613444 DNMBPQ6XZF7 1577 aa23.67■■□□□ 1.38
USP39-220ENST00000613444 URB2Q14146 1524 aaKnown RBP23.64■■□□□ 1.38
USP39-220ENST00000613444 TOPBP1Q92547 1522 aa23.64■■□□□ 1.37
USP39-220ENST00000613444 SOGA1O94964 1423 aa23.62■■□□□ 1.37
USP39-220ENST00000613444 FGD5Q6ZNL6 1462 aa23.58■■□□□ 1.36
USP39-220ENST00000613444 RUSC2Q8N2Y8 1516 aa23.57■■□□□ 1.36
USP39-220ENST00000613444 FAM9AQ8IZU1 332 aaPredicted RBP23.57■■□□□ 1.36
USP39-220ENST00000613444 MRC2Q9UBG0 1479 aa23.53■■□□□ 1.36
USP39-220ENST00000613444 EEA1Q15075 1411 aa23.52■■□□□ 1.36
USP39-220ENST00000613444 POLA1P09884 1462 aaPredicted RBP23.51■■□□□ 1.35
USP39-220ENST00000613444 ERCC6Q03468 1493 aa23.49■■□□□ 1.35
USP39-220ENST00000613444 WDR62O43379 1518 aa23.45■■□□□ 1.34
USP39-220ENST00000613444 THOC2Q8NI27 1593 aaKnown RBP23.45■■□□□ 1.34
USP39-220ENST00000613444 LOC105371045A0A1W2PR82 267 aa23.44■■□□□ 1.34
USP39-220ENST00000613444 RAD54L2Q9Y4B4 1467 aa23.42■■□□□ 1.34
USP39-220ENST00000613444 CSRNP3Q8WYN3 585 aa23.39■■□□□ 1.33
USP39-220ENST00000613444 ABCA10Q8WWZ4 1543 aa23.38■■□□□ 1.33
USP39-220ENST00000613444 WDR97A6NE52 1622 aa23.38■■□□□ 1.33
USP39-220ENST00000613444 KIF27Q86VH2 1401 aa23.37■■□□□ 1.33
USP39-220ENST00000613444 CUX2O14529 1486 aa23.36■■□□□ 1.33
USP39-220ENST00000613444 TARBP1Q13395 1621 aaKnown RBP23.34■■□□□ 1.33
USP39-220ENST00000613444 KIF21BO75037 1637 aa23.27■■□□□ 1.32
USP39-220ENST00000613444 ABCA5Q8WWZ7 1642 aa23.24■■□□□ 1.31
USP39-220ENST00000613444 PRXQ9BXM0 1461 aa23.22■■□□□ 1.31
USP39-220ENST00000613444 IGF1RP08069 1367 aa23.22■■□□□ 1.31
USP39-220ENST00000613444 EHMT2Q96KQ7 1210 aa23.21■■□□□ 1.31
USP39-220ENST00000613444 IFT140Q96RY7 1462 aa23.21■■□□□ 1.31
USP39-220ENST00000613444 GOLGA3Q08378 1498 aa23.18■■□□□ 1.3
USP39-220ENST00000613444 TDRD9Q8NDG6 1382 aaKnown RBP23.18■■□□□ 1.3
USP39-220ENST00000613444 RAPGEF2Q9Y4G8 1499 aa23.16■■□□□ 1.3
USP39-220ENST00000613444 ERICH3Q5RHP9 1530 aa23.15■■□□□ 1.3
USP39-220ENST00000613444 GAPVD1Q14C86 1478 aa23.15■■□□□ 1.3
USP39-220ENST00000613444 ZNF608Q9ULD9 1512 aaPredicted RBP23.11■■□□□ 1.29
USP39-220ENST00000613444 PBRM1Q86U86 1689 aa23.08■■□□□ 1.29
USP39-220ENST00000613444 AQRO60306 1485 aaKnown RBP eCLIP23.08■■□□□ 1.292e-6■■■■□ 20.3
USP39-220ENST00000613444 TNIKQ9UKE5 1360 aa23.08■■□□□ 1.29
USP39-220ENST00000613444 CUL7Q14999 1698 aa23.07■■□□□ 1.28
USP39-220ENST00000613444 CARMIL1Q5VZK9 1371 aa23.07■■□□□ 1.28
USP39-220ENST00000613444 EIF4G3O43432 1585 aaKnown RBP23.04■■□□□ 1.28
USP39-220ENST00000613444 UBTFP17480 764 aaKnown RBP23.02■■□□□ 1.28
USP39-220ENST00000613444 GRIN2BQ13224 1484 aa22.99■■□□□ 1.27
USP39-220ENST00000613444 CEP162Q5TB80 1403 aa22.94■■□□□ 1.26
USP39-220ENST00000613444 ADAMTS12P58397 1594 aa22.93■■□□□ 1.26
USP39-220ENST00000613444 FHAD1B1AJZ9 1412 aa22.89■■□□□ 1.25
USP39-220ENST00000613444 SNAPC4Q5SXM2 1469 aa22.87■■□□□ 1.25
USP39-220ENST00000613444 MAGI1Q96QZ7 1491 aaPredicted RBP22.83■■□□□ 1.25
USP39-220ENST00000613444 CTTNBP2Q8WZ74 1663 aa22.81■■□□□ 1.24
USP39-220ENST00000613444 CLIP1P30622 1438 aa22.79■■□□□ 1.24
USP39-220ENST00000613444 SYNJ2O15056 1496 aa22.74■■□□□ 1.23
USP39-220ENST00000613444 GRIN2AQ12879 1464 aa22.73■■□□□ 1.23
USP39-220ENST00000613444 RANGAP1P46060 587 aaPredicted RBP22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms