RNA–Protein interactions for RNA: ENST00000393820.2

NPM1-203, Transcript of nucleophosmin 1, humanhuman

TSL 1 (best) BASIC

Gene NPM1, Length 1,598 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPM1-203ENST00000393820 AEBP2Q6ZN18 517 aaPredicted RBP22.81■■□□□ 1.24
NPM1-203ENST00000393820 CHIC1Q5VXU3 224 aa21.41■■□□□ 1.02
NPM1-203ENST00000393820 SENP3Q9H4L4 574 aaPredicted RBP19.63■□□□□ 0.73
NPM1-203ENST00000393820 PHF23Q9BUL5 403 aaPredicted RBP19.27■□□□□ 0.68
NPM1-203ENST00000393820 FOXD1Q16676 465 aa18.3■□□□□ 0.52
NPM1-203ENST00000393820 POTEDQ86YR6 584 aa17.79■□□□□ 0.44
NPM1-203ENST00000393820 MSH5O43196 834 aa17.4■□□□□ 0.38
NPM1-203ENST00000393820 PIAS4Q8N2W9 510 aaPredicted RBP17■□□□□ 0.31
NPM1-203ENST00000393820 PLPPR3Q6T4P5 718 aa16.75■□□□□ 0.27
NPM1-203ENST00000393820 PPP6R1Q9UPN7 881 aa16.69■□□□□ 0.26
NPM1-203ENST00000393820 ADRA2BP18089 450 aa16.63■□□□□ 0.25
NPM1-203ENST00000393820 DMRT2Q9Y5R5 561 aa15.46■□□□□ 0.07
NPM1-203ENST00000393820 MAPK8IP2Q13387 824 aaPredicted RBP15.41■□□□□ 0.06
NPM1-203ENST00000393820 SCAF1Q9H7N4 1312 aaKnown RBP15.31■□□□□ 0.04
NPM1-203ENST00000393820 CACNB1Q02641 598 aaPredicted RBP15.23■□□□□ 0.03
NPM1-203ENST00000393820 DCAF8L1A6NGE4 600 aa14.87□□□□□ -0.03
NPM1-203ENST00000393820 RNF39Q9H2S5 420 aa14.76□□□□□ -0.05
NPM1-203ENST00000393820 HOXD11P31277 338 aaPredicted RBP14.69□□□□□ -0.06
NPM1-203ENST00000393820 PPP4R3CPQ6ZMV5 832 aa14.6□□□□□ -0.07
NPM1-203ENST00000393820 C1QBPQ07021 282 aaKnown RBP14.55□□□□□ -0.08
NPM1-203ENST00000393820 CNKSR2Q8WXI2 1034 aa14.46□□□□□ -0.09
NPM1-203ENST00000393820 RNF216Q9NWF9 866 aaPredicted RBP14.46□□□□□ -0.09
NPM1-203ENST00000393820 DNAJC5BQ9UF47 199 aa14.33□□□□□ -0.12
NPM1-203ENST00000393820 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.03□□□□□ -0.162e-17■■□□□ 12.3
NPM1-203ENST00000393820 NCBP3Q53F19 620 aaKnown RBP13.94□□□□□ -0.18
NPM1-203ENST00000393820 POTEHQ6S545 545 aa13.86□□□□□ -0.19
NPM1-203ENST00000393820 KCNA4P22459 653 aa13.71□□□□□ -0.22
NPM1-203ENST00000393820 NPM3O75607 178 aaKnown RBP13.66□□□□□ -0.22
NPM1-203ENST00000393820 DSG3P32926 999 aa13.63□□□□□ -0.23
NPM1-203ENST00000393820 CAPN15O75808 1086 aa13.62□□□□□ -0.23
NPM1-203ENST00000393820 U3KPZ7 1027 aaPredicted RBP13.62□□□□□ -0.23
NPM1-203ENST00000393820 SPINK5Q9NQ38 1064 aaPredicted RBP13.58□□□□□ -0.24
NPM1-203ENST00000393820 APLP2Q06481 763 aa13.3□□□□□ -0.28
NPM1-203ENST00000393820 TRHP20396 242 aaPredicted RBP13.27□□□□□ -0.29
NPM1-203ENST00000393820 ZNF219Q9P2Y4 722 aaPredicted RBP13.25□□□□□ -0.29
NPM1-203ENST00000393820 ABCB7O75027 752 aa13.23□□□□□ -0.29
NPM1-203ENST00000393820 SLC4A2P04920 1241 aa13.16□□□□□ -0.3
NPM1-203ENST00000393820 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.15□□□□□ -0.3
NPM1-203ENST00000393820 HNRNPUL2Q1KMD3 747 aaKnown RBP13.15□□□□□ -0.3
NPM1-203ENST00000393820 RBM42Q9BTD8 480 aaKnown RBP13.09□□□□□ -0.31
NPM1-203ENST00000393820 SAMD1Q6SPF0 538 aaPredicted RBP13.03□□□□□ -0.32
NPM1-203ENST00000393820 SLC4A1APQ9BWU0 796 aaKnown RBP13.02□□□□□ -0.33
NPM1-203ENST00000393820 CHRDL2Q6WN34 429 aa12.97□□□□□ -0.33
NPM1-203ENST00000393820 EHMT2Q96KQ7 1210 aa12.92□□□□□ -0.34
NPM1-203ENST00000393820 POLA2Q14181 598 aa12.8□□□□□ -0.36
NPM1-203ENST00000393820 SP7Q8TDD2 431 aaPredicted RBP12.76□□□□□ -0.37
NPM1-203ENST00000393820 MYCNP04198 464 aaPredicted RBP12.69□□□□□ -0.38
NPM1-203ENST00000393820 AKT1S1Q96B36 256 aa12.66□□□□□ -0.38
NPM1-203ENST00000393820 ZBTB22O15209 634 aa12.64□□□□□ -0.39
NPM1-203ENST00000393820 CSRNP3Q8WYN3 585 aa12.64□□□□□ -0.39
NPM1-203ENST00000393820 ZBTB12Q9Y330 459 aaPredicted RBP12.56□□□□□ -0.4
NPM1-203ENST00000393820 PIP4P2Q8N4L2 257 aa12.53□□□□□ -0.4
NPM1-203ENST00000393820 REM2Q8IYK8 340 aaPredicted RBP12.52□□□□□ -0.41
NPM1-203ENST00000393820 FOXD4L1Q9NU39 408 aa12.49□□□□□ -0.41
NPM1-203ENST00000393820 HAX1O00165 279 aa12.47□□□□□ -0.41
NPM1-203ENST00000393820 OSCARQ8IYS5 282 aa12.39□□□□□ -0.43
NPM1-203ENST00000393820 PITPNM1O00562 1244 aa12.38□□□□□ -0.43
NPM1-203ENST00000393820 FXR2P51116 673 aaKnown RBP eCLIP12.38□□□□□ -0.43
NPM1-203ENST00000393820 ATF5Q9Y2D1 282 aaPredicted RBP12.36□□□□□ -0.43
NPM1-203ENST00000393820 EVX2Q03828 476 aa12.21□□□□□ -0.46
NPM1-203ENST00000393820 SPDYE2BA6NHP3 402 aa12.1□□□□□ -0.47
NPM1-203ENST00000393820 SPDYE6P0CI01 402 aa12.1□□□□□ -0.47
NPM1-203ENST00000393820 SPDYE2Q495Y8 402 aa12.1□□□□□ -0.47
NPM1-203ENST00000393820 PRKAR2AP13861 404 aaKnown RBP12.06□□□□□ -0.48
NPM1-203ENST00000393820 NISCHQ9Y2I1 1504 aa12.03□□□□□ -0.48
NPM1-203ENST00000393820 FBLN2P98095 1184 aa12.02□□□□□ -0.49
NPM1-203ENST00000393820 SPDYE1Q8NFV5 336 aaPredicted RBP12.02□□□□□ -0.49
NPM1-203ENST00000393820 C19orf67A6NJJ6 358 aa12.01□□□□□ -0.49
NPM1-203ENST00000393820 CLEC11AQ9Y240 323 aa12□□□□□ -0.49
NPM1-203ENST00000393820 ATXN8OSP0DMR3 200 aa11.97□□□□□ -0.49
NPM1-203ENST00000393820 GABBR2O75899 941 aa11.96□□□□□ -0.5
NPM1-203ENST00000393820 LHX8Q68G74 356 aa11.96□□□□□ -0.5
NPM1-203ENST00000393820 ZNF692Q9BU19 519 aaPredicted RBP11.86□□□□□ -0.51
NPM1-203ENST00000393820 SSUH2Q9Y2M2 353 aa11.84□□□□□ -0.51
NPM1-203ENST00000393820 CHADLQ6NUI6 762 aa11.79□□□□□ -0.52
NPM1-203ENST00000393820 MKRN4PQ13434 485 aaPredicted RBP11.78□□□□□ -0.52
NPM1-203ENST00000393820 PRR29P0C7W0 189 aa11.75□□□□□ -0.53
NPM1-203ENST00000393820 CLCN6P51797 869 aa11.67□□□□□ -0.54
NPM1-203ENST00000393820 POTEIP0CG38 1075 aa11.66□□□□□ -0.54
NPM1-203ENST00000393820 CD44P16070 742 aaKnown RBP11.66□□□□□ -0.54
NPM1-203ENST00000393820 PABPN1Q86U42 306 aaKnown RBP eCLIP11.65□□□□□ -0.54
NPM1-203ENST00000393820 PLSCR2Q9NRY7 297 aa11.63□□□□□ -0.55
NPM1-203ENST00000393820 FARP1Q9Y4F1 1045 aaPredicted RBP11.6□□□□□ -0.55
NPM1-203ENST00000393820 DCBLD2Q96PD2 775 aa11.57□□□□□ -0.56
NPM1-203ENST00000393820 SLC24A1O60721 1099 aa11.5□□□□□ -0.57
NPM1-203ENST00000393820 RTN4Q9NQC3 1192 aaKnown RBP11.49□□□□□ -0.57
NPM1-203ENST00000393820 ZNF579Q8NAF0 562 aaKnown RBP11.45□□□□□ -0.58
NPM1-203ENST00000393820 AMER1Q5JTC6 1135 aaPredicted RBP11.45□□□□□ -0.58
NPM1-203ENST00000393820 FKBP8Q14318 412 aa11.42□□□□□ -0.58
NPM1-203ENST00000393820 ZRANB1Q9UGI0 708 aa11.41□□□□□ -0.58
NPM1-203ENST00000393820 OTUD5Q96G74 571 aa11.34□□□□□ -0.59
NPM1-203ENST00000393820 GALR2O43603 387 aaPredicted RBP11.32□□□□□ -0.6
NPM1-203ENST00000393820 CREBZFQ9NS37 354 aa11.29□□□□□ -0.6
NPM1-203ENST00000393820 STAG3Q9UJ98 1225 aa11.28□□□□□ -0.6
NPM1-203ENST00000393820 POTEMA6NI47 508 aa11.28□□□□□ -0.6
NPM1-203ENST00000393820 PAK3O75914 559 aaPredicted RBP11.26□□□□□ -0.61
NPM1-203ENST00000393820 POTEB2H3BUK9 544 aa11.25□□□□□ -0.61
NPM1-203ENST00000393820 SPDYE4A6NLX3 237 aa11.24□□□□□ -0.61
NPM1-203ENST00000393820 POTEGQ6S5H5 508 aa11.24□□□□□ -0.61
NPM1-203ENST00000393820 PHF12Q96QT6 1004 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms