Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.1■□□□□ 0.65
PROM1O43490 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
PROM1O43490 GUSBP6-202ENST00000438529 1198 ntBASIC19.1■□□□□ 0.65
PROM1O43490 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
PROM1O43490 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
PROM1O43490 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PROM1O43490 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.1■□□□□ 0.65
PROM1O43490 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.1■□□□□ 0.65
PROM1O43490 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.1■□□□□ 0.65
PROM1O43490 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PROM1O43490 DPP3P2-201ENST00000416030 1696 ntBASIC19.1■□□□□ 0.65
PROM1O43490 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
PROM1O43490 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PROM1O43490 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PROM1O43490 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PROM1O43490 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PROM1O43490 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
PROM1O43490 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
PROM1O43490 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PROM1O43490 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.09■□□□□ 0.65
PROM1O43490 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
PROM1O43490 SMG8-203ENST00000578922 2178 ntBASIC19.09■□□□□ 0.65
PROM1O43490 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
PROM1O43490 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PROM1O43490 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PROM1O43490 MIPEPP3-201ENST00000412105 444 ntBASIC19.09■□□□□ 0.65
PROM1O43490 TSPY6P-201ENST00000448518 926 ntBASIC19.09■□□□□ 0.65
PROM1O43490 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.09■□□□□ 0.65
PROM1O43490 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PROM1O43490 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.09■□□□□ 0.65
PROM1O43490 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
PROM1O43490 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
PROM1O43490 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
PROM1O43490 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.08■□□□□ 0.65
PROM1O43490 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.65
PROM1O43490 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
PROM1O43490 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PROM1O43490 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.08■□□□□ 0.65
PROM1O43490 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.08■□□□□ 0.65
PROM1O43490 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.08■□□□□ 0.64
PROM1O43490 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.08■□□□□ 0.64
PROM1O43490 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
PROM1O43490 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.08■□□□□ 0.64
PROM1O43490 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
PROM1O43490 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PROM1O43490 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.08■□□□□ 0.64
PROM1O43490 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PROM1O43490 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PROM1O43490 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
PROM1O43490 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
PROM1O43490 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.07■□□□□ 0.64
PROM1O43490 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
PROM1O43490 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.07■□□□□ 0.64
PROM1O43490 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PROM1O43490 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PROM1O43490 SLC29A4P1-201ENST00000398760 971 ntBASIC19.07■□□□□ 0.64
PROM1O43490 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
PROM1O43490 C2orf69P4-201ENST00000565394 541 ntBASIC19.07■□□□□ 0.64
PROM1O43490 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.07■□□□□ 0.64
PROM1O43490 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PROM1O43490 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
PROM1O43490 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.07■□□□□ 0.64
PROM1O43490 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PROM1O43490 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PROM1O43490 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PROM1O43490 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PROM1O43490 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.06■□□□□ 0.64
PROM1O43490 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PROM1O43490 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PROM1O43490 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PROM1O43490 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
PROM1O43490 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PROM1O43490 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PROM1O43490 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
PROM1O43490 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.06■□□□□ 0.64
PROM1O43490 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PROM1O43490 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.06■□□□□ 0.64
PROM1O43490 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.06■□□□□ 0.64
PROM1O43490 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.06■□□□□ 0.64
PROM1O43490 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.06■□□□□ 0.64
PROM1O43490 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.06■□□□□ 0.64
PROM1O43490 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PROM1O43490 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
PROM1O43490 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PROM1O43490 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PROM1O43490 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PROM1O43490 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.06■□□□□ 0.64
PROM1O43490 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PROM1O43490 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PROM1O43490 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PROM1O43490 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PROM1O43490 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
PROM1O43490 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
PROM1O43490 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
PROM1O43490 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.05■□□□□ 0.64
PROM1O43490 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
PROM1O43490 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.05■□□□□ 0.64
PROM1O43490 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.05■□□□□ 0.64
PROM1O43490 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
PROM1O43490 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms