RNA–Protein interactions for RNA: ENST00000578922.1

SMG8-203, Transcript of SMG8, nonsense mediated mRNA decay factor, humanhuman

BASIC

Gene SMG8, Length 2,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG8-203ENST00000578922 NISCHQ9Y2I1 1504 aa45.51■■■■■ 4.88
SMG8-203ENST00000578922 CCDC180Q9P1Z9 1646 aa39.54■■■■□ 3.92
SMG8-203ENST00000578922 ZCCHC6Q5VYS8 1495 aaKnown RBP38.22■■■■□ 3.71
SMG8-203ENST00000578922 DCAF8L2P0C7V8 631 aa37.93■■■■□ 3.66
SMG8-203ENST00000578922 ABCC9O60706 1549 aa37.67■■■■□ 3.62
SMG8-203ENST00000578922 DCAF1Q9Y4B6 1507 aa37.47■■■■□ 3.59
SMG8-203ENST00000578922 SHROOM4Q9ULL8 1493 aa37.47■■■■□ 3.59
SMG8-203ENST00000578922 MYO15BQ96JP2 1530 aa36.98■■■■□ 3.51
SMG8-203ENST00000578922 NACADO15069 1562 aa36.87■■■■□ 3.49
SMG8-203ENST00000578922 SCRIBQ14160 1630 aa36.62■■■■□ 3.45
SMG8-203ENST00000578922 RB1CC1Q8TDY2 1594 aa36.59■■■■□ 3.45
SMG8-203ENST00000578922 SUPT5HO00267 1087 aaKnown RBP36.05■■■■□ 3.36
SMG8-203ENST00000578922 UNC13AQ9UPW8 1703 aa35.91■■■■□ 3.34
SMG8-203ENST00000578922 PABPN1Q86U42 306 aaKnown RBP eCLIP35.63■■■■□ 3.29
SMG8-203ENST00000578922 BICRAQ9NZM4 1560 aa35.53■■■■□ 3.28
SMG8-203ENST00000578922 CECR2Q9BXF3 1484 aa35.49■■■■□ 3.27
SMG8-203ENST00000578922 RSF1Q96T23 1441 aaPredicted RBP35.37■■■■□ 3.25
SMG8-203ENST00000578922 MROH2BQ7Z745 1585 aa35.24■■■■□ 3.23
SMG8-203ENST00000578922 BAZ1AQ9NRL2 1556 aaPredicted RBP35.12■■■■□ 3.21
SMG8-203ENST00000578922 SMARCA4P51532 1647 aa34.98■■■■□ 3.19
SMG8-203ENST00000578922 WIZO95785 1651 aa34.97■■■■□ 3.19
SMG8-203ENST00000578922 TOP2AP11388 1531 aaKnown RBP34.5■■■■□ 3.11
SMG8-203ENST00000578922 EIF4G1Q04637 1599 aaKnown RBP34.48■■■■□ 3.11
SMG8-203ENST00000578922 PEG3Q9GZU2 1588 aa34.45■■■■□ 3.11
SMG8-203ENST00000578922 ATAD2BQ9ULI0 1458 aa34.43■■■■□ 3.1
SMG8-203ENST00000578922 CHIC1Q5VXU3 224 aa34.38■■■■□ 3.09
SMG8-203ENST00000578922 SMARCA2P51531 1590 aa34.34■■■■□ 3.09
SMG8-203ENST00000578922 BAZ1BQ9UIG0 1483 aaKnown RBP34.26■■■■□ 3.07
SMG8-203ENST00000578922 CCDC88BA6NC98 1476 aa34.23■■■■□ 3.07
SMG8-203ENST00000578922 NCAPD3P42695 1498 aa34.06■■■■□ 3.04
SMG8-203ENST00000578922 CC2D2AQ9P2K1 1620 aa33.99■■■■□ 3.03
SMG8-203ENST00000578922 HMGXB3Q12766 1538 aa33.98■■■■□ 3.03
SMG8-203ENST00000578922 TRIM41Q8WV44 630 aa33.78■■■■□ 3
SMG8-203ENST00000578922 ABCC8Q09428 1581 aa33.6■■■□□ 2.97
SMG8-203ENST00000578922 DNAJC5BQ9UF47 199 aa33.35■■■□□ 2.93
SMG8-203ENST00000578922 CFTRP13569 1480 aa33.35■■■□□ 2.93
SMG8-203ENST00000578922 FAM9AQ8IZU1 332 aaPredicted RBP33.33■■■□□ 2.93
SMG8-203ENST00000578922 WRNQ14191 1432 aaPredicted RBP eCLIP33.3■■■□□ 2.92
SMG8-203ENST00000578922 CADPSQ9ULU8 1353 aa33.26■■■□□ 2.92
SMG8-203ENST00000578922 LOC105371045A0A1W2PR82 267 aa33.2■■■□□ 2.91
SMG8-203ENST00000578922 SYNJ1O43426 1573 aa33.18■■■□□ 2.9
SMG8-203ENST00000578922 PRDM2Q13029 1718 aa33.09■■■□□ 2.89
SMG8-203ENST00000578922 NESP48681 1621 aa33.08■■■□□ 2.89
SMG8-203ENST00000578922 EHMT2Q96KQ7 1210 aa33■■■□□ 2.87
SMG8-203ENST00000578922 SOGA1O94964 1423 aa32.98■■■□□ 2.87
SMG8-203ENST00000578922 TOP2BQ02880 1626 aa32.96■■■□□ 2.87
SMG8-203ENST00000578922 CUX1P39880 1505 aa32.94■■■□□ 2.86
SMG8-203ENST00000578922 FANCD2Q9BXW9 1451 aa32.93■■■□□ 2.86
SMG8-203ENST00000578922 BIVM-ERCC5R4GMW8 1640 aa32.89■■■□□ 2.86
SMG8-203ENST00000578922 LAMC3Q9Y6N6 1575 aa32.89■■■□□ 2.86
SMG8-203ENST00000578922 RUSC2Q8N2Y8 1516 aa32.88■■■□□ 2.85
SMG8-203ENST00000578922 EEA1Q15075 1411 aa32.71■■■□□ 2.83
SMG8-203ENST00000578922 CSRNP3Q8WYN3 585 aa32.69■■■□□ 2.82
SMG8-203ENST00000578922 PDS5BQ9NTI5 1447 aa32.69■■■□□ 2.82
SMG8-203ENST00000578922 CEP164Q9UPV0 1460 aa32.69■■■□□ 2.82
SMG8-203ENST00000578922 KIF21AQ7Z4S6 1674 aa32.59■■■□□ 2.81
SMG8-203ENST00000578922 FGD5Q6ZNL6 1462 aa32.58■■■□□ 2.81
SMG8-203ENST00000578922 DNMBPQ6XZF7 1577 aa32.56■■■□□ 2.8
SMG8-203ENST00000578922 TOPBP1Q92547 1522 aa32.55■■■□□ 2.8
SMG8-203ENST00000578922 URB2Q14146 1524 aaKnown RBP32.51■■■□□ 2.8
SMG8-203ENST00000578922 KIF27Q86VH2 1401 aa32.43■■■□□ 2.78
SMG8-203ENST00000578922 POLA1P09884 1462 aaPredicted RBP32.41■■■□□ 2.78
SMG8-203ENST00000578922 CUX2O14529 1486 aa32.4■■■□□ 2.78
SMG8-203ENST00000578922 RAD54L2Q9Y4B4 1467 aa32.39■■■□□ 2.78
SMG8-203ENST00000578922 UBTFP17480 764 aaKnown RBP32.38■■■□□ 2.77
SMG8-203ENST00000578922 GOLGA3Q08378 1498 aa32.36■■■□□ 2.77
SMG8-203ENST00000578922 KIF21BO75037 1637 aa32.32■■■□□ 2.76
SMG8-203ENST00000578922 MRC2Q9UBG0 1479 aa32.27■■■□□ 2.76
SMG8-203ENST00000578922 RAPGEF2Q9Y4G8 1499 aa32.27■■■□□ 2.76
SMG8-203ENST00000578922 ERCC6Q03468 1493 aa32.26■■■□□ 2.76
SMG8-203ENST00000578922 TNIKQ9UKE5 1360 aa32.25■■■□□ 2.75
SMG8-203ENST00000578922 ABCA10Q8WWZ4 1543 aa32.21■■■□□ 2.75
SMG8-203ENST00000578922 PRXQ9BXM0 1461 aa32.19■■■□□ 2.74
SMG8-203ENST00000578922 IGF1RP08069 1367 aa32.17■■■□□ 2.74
SMG8-203ENST00000578922 CEP162Q5TB80 1403 aa32.15■■■□□ 2.74
SMG8-203ENST00000578922 TDRD9Q8NDG6 1382 aaKnown RBP32.09■■■□□ 2.73
SMG8-203ENST00000578922 ERICH3Q5RHP9 1530 aa32.08■■■□□ 2.73
SMG8-203ENST00000578922 WDR97A6NE52 1622 aa32.08■■■□□ 2.73
SMG8-203ENST00000578922 WDR62O43379 1518 aa32.07■■■□□ 2.72
SMG8-203ENST00000578922 HRCP23327 699 aa32.04■■■□□ 2.72
SMG8-203ENST00000578922 RANGAP1P46060 587 aaPredicted RBP32.04■■■□□ 2.72
SMG8-203ENST00000578922 TARBP1Q13395 1621 aaKnown RBP32.03■■■□□ 2.72
SMG8-203ENST00000578922 CARMIL1Q5VZK9 1371 aa32.02■■■□□ 2.72
SMG8-203ENST00000578922 THOC2Q8NI27 1593 aaKnown RBP31.99■■■□□ 2.71
SMG8-203ENST00000578922 GAPVD1Q14C86 1478 aa31.95■■■□□ 2.71
SMG8-203ENST00000578922 ABCA5Q8WWZ7 1642 aa31.95■■■□□ 2.7
SMG8-203ENST00000578922 CLIP1P30622 1438 aa31.9■■■□□ 2.7
SMG8-203ENST00000578922 AQRO60306 1485 aaKnown RBP eCLIP31.87■■■□□ 2.69
SMG8-203ENST00000578922 IFT140Q96RY7 1462 aa31.86■■■□□ 2.69
SMG8-203ENST00000578922 ZNF608Q9ULD9 1512 aaPredicted RBP31.82■■■□□ 2.68
SMG8-203ENST00000578922 CUL7Q14999 1698 aa31.82■■■□□ 2.68
SMG8-203ENST00000578922 PCGF6Q9BYE7 350 aa31.81■■■□□ 2.68
SMG8-203ENST00000578922 PPARGC1BQ86YN6 1023 aaKnown RBP31.77■■■□□ 2.68
SMG8-203ENST00000578922 PBRM1Q86U86 1689 aa31.73■■■□□ 2.67
SMG8-203ENST00000578922 GRIN2BQ13224 1484 aa31.67■■■□□ 2.66
SMG8-203ENST00000578922 EIF4G3O43432 1585 aaKnown RBP31.63■■■□□ 2.65
SMG8-203ENST00000578922 VPS8Q8N3P4 1428 aa31.58■■■□□ 2.65
SMG8-203ENST00000578922 ARAP1Q96P48 1450 aa31.57■■■□□ 2.64
SMG8-203ENST00000578922 FHAD1B1AJZ9 1412 aa31.56■■■□□ 2.64
SMG8-203ENST00000578922 ADAMTS12P58397 1594 aa31.55■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms