RNA–Protein interactions for RNA: ENST00000398645.6

KDM2A-202, Transcript of lysine demethylase 2A, humanhuman

TSL 1 (best) BASIC

Gene KDM2A, Length 6,511 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM2A-202ENST00000398645 DCAF8L2P0C7V8 631 aa33.62■■■□□ 2.97
KDM2A-202ENST00000398645 EHMT2Q96KQ7 1210 aa32.35■■■□□ 2.77
KDM2A-202ENST00000398645 SUPT5HO00267 1087 aaKnown RBP32.03■■■□□ 2.72
KDM2A-202ENST00000398645 SHROOM4Q9ULL8 1493 aa31.33■■■□□ 2.61
KDM2A-202ENST00000398645 PELP1Q8IZL8 1130 aaKnown RBP31.3■■■□□ 2.6
KDM2A-202ENST00000398645 TTBK1Q5TCY1 1321 aaPredicted RBP31.24■■■□□ 2.59
KDM2A-202ENST00000398645 ERICH6Q7L0X2 663 aa30.79■■■□□ 2.52
KDM2A-202ENST00000398645 FAM9AQ8IZU1 332 aaPredicted RBP30.6■■■□□ 2.49
KDM2A-202ENST00000398645 PCGF6Q9BYE7 350 aa30.54■■■□□ 2.48
KDM2A-202ENST00000398645 RANGAP1P46060 587 aaPredicted RBP30.46■■■□□ 2.47
KDM2A-202ENST00000398645 APLP2Q06481 763 aa30.42■■■□□ 2.46
KDM2A-202ENST00000398645 YTHDC1Q96MU7 727 aaKnown RBP30.3■■■□□ 2.44
KDM2A-202ENST00000398645 MYT1Q01538 1121 aa30.29■■■□□ 2.44
KDM2A-202ENST00000398645 CENPBP07199 599 aaPredicted RBP30.01■■■□□ 2.39
KDM2A-202ENST00000398645 CCER1Q8TC90 406 aaPredicted RBP29.93■■■□□ 2.38
KDM2A-202ENST00000398645 ATP1B4Q9UN42 357 aaPredicted RBP29.93■■■□□ 2.38
KDM2A-202ENST00000398645 PPARGC1BQ86YN6 1023 aaKnown RBP29.72■■■□□ 2.35
KDM2A-202ENST00000398645 NEFLP07196 543 aa29.56■■■□□ 2.32
KDM2A-202ENST00000398645 CNGB1Q14028 1251 aaPredicted RBP29.37■■■□□ 2.29
KDM2A-202ENST00000398645 ZEB1P37275 1124 aaPredicted RBP29.23■■■□□ 2.27
KDM2A-202ENST00000398645 POLR3GLQ9BT43 218 aa29.22■■■□□ 2.27
KDM2A-202ENST00000398645 UBTFP17480 764 aaKnown RBP29.14■■■□□ 2.26
KDM2A-202ENST00000398645 TRIM41Q8WV44 630 aa29.13■■■□□ 2.25
KDM2A-202ENST00000398645 DAXXQ9UER7 740 aaPredicted RBP29.06■■■□□ 2.24
KDM2A-202ENST00000398645 NISCHQ9Y2I1 1504 aa29.01■■■□□ 2.24
KDM2A-202ENST00000398645 ITGAEP38570 1179 aa28.95■■■□□ 2.22
KDM2A-202ENST00000398645 CHIC1Q5VXU3 224 aa28.85■■■□□ 2.21
KDM2A-202ENST00000398645 MYT1LQ9UL68 1186 aa28.66■■■□□ 2.18
KDM2A-202ENST00000398645 HRCP23327 699 aa28.61■■■□□ 2.17
KDM2A-202ENST00000398645 SLC4A1APQ9BWU0 796 aaKnown RBP28.57■■■□□ 2.16
KDM2A-202ENST00000398645 BCANQ96GW7 911 aa28.49■■■□□ 2.15
KDM2A-202ENST00000398645 HNRNPUL2Q1KMD3 747 aaKnown RBP28.49■■■□□ 2.15
KDM2A-202ENST00000398645 ZNF316A6NFI3 1004 aaPredicted RBP28.47■■■□□ 2.15
KDM2A-202ENST00000398645 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.42■■■□□ 2.14
KDM2A-202ENST00000398645 CLSPNQ9HAW4 1339 aa28.39■■■□□ 2.14
KDM2A-202ENST00000398645 TRIM26Q12899 539 aaPredicted RBP28.39■■■□□ 2.14
KDM2A-202ENST00000398645 RTL5Q5HYW3 569 aaPredicted RBP28.39■■■□□ 2.13
KDM2A-202ENST00000398645 LOC105371045A0A1W2PR82 267 aa28.35■■■□□ 2.13
KDM2A-202ENST00000398645 BCL11AQ9H165 835 aa28.31■■■□□ 2.12
KDM2A-202ENST00000398645 DIEXFQ68CQ4 756 aaKnown RBP28.05■■■□□ 2.08
KDM2A-202ENST00000398645 GTF3C3Q9Y5Q9 886 aa27.96■■■□□ 2.07
KDM2A-202ENST00000398645 NEUROD1Q13562 356 aa27.89■■■□□ 2.06
KDM2A-202ENST00000398645 SLC24A1O60721 1099 aa27.77■■■□□ 2.04
KDM2A-202ENST00000398645 FAM50AQ14320 339 aaKnown RBP27.74■■■□□ 2.03
KDM2A-202ENST00000398645 ZNF326Q5BKZ1 582 aaKnown RBP27.71■■■□□ 2.03
KDM2A-202ENST00000398645 NPM2Q86SE8 214 aaKnown RBP27.67■■■□□ 2.02
KDM2A-202ENST00000398645 TRIM52Q96A61 297 aa27.66■■■□□ 2.02
KDM2A-202ENST00000398645 EIF5BO60841 1220 aaKnown RBP27.65■■■□□ 2.02
KDM2A-202ENST00000398645 CDK11AQ9UQ88 783 aaPredicted RBP27.6■■■□□ 2.01
KDM2A-202ENST00000398645 CANXP27824 592 aaKnown RBP27.46■■□□□ 1.99
KDM2A-202ENST00000398645 ZBTB47Q9UFB7 747 aaPredicted RBP27.42■■□□□ 1.98
KDM2A-202ENST00000398645 ARXQ96QS3 562 aa27.37■■□□□ 1.97
KDM2A-202ENST00000398645 ANP32CO43423 234 aa27.35■■□□□ 1.97
KDM2A-202ENST00000398645 NBR1Q14596 966 aa27.21■■□□□ 1.95
KDM2A-202ENST00000398645 ARID3CA6NKF2 412 aa27.2■■□□□ 1.94
KDM2A-202ENST00000398645 ANP32AP39687 249 aaKnown RBP27.17■■□□□ 1.94
KDM2A-202ENST00000398645 FKBP8Q14318 412 aa27.07■■□□□ 1.92
KDM2A-202ENST00000398645 SALL2Q9Y467 1007 aaPredicted RBP27.06■■□□□ 1.92
KDM2A-202ENST00000398645 ACIN1Q9UKV3 1341 aaKnown RBP27.04■■□□□ 1.92
KDM2A-202ENST00000398645 PLPPR3Q6T4P5 718 aa26.94■■□□□ 1.9
KDM2A-202ENST00000398645 HSP90AA1P07900 732 aaKnown RBP26.93■■□□□ 1.9
KDM2A-202ENST00000398645 P3H3Q8IVL6 736 aa26.9■■□□□ 1.9
KDM2A-202ENST00000398645 FBLN2P98095 1184 aa26.85■■□□□ 1.89
KDM2A-202ENST00000398645 IRX6P78412 446 aaPredicted RBP26.83■■□□□ 1.89
KDM2A-202ENST00000398645 ANP32BQ92688 251 aaKnown RBP26.83■■□□□ 1.89
KDM2A-202ENST00000398645 FAM9BQ8IZU0 186 aa26.79■■□□□ 1.88
KDM2A-202ENST00000398645 NEFMP07197 916 aa26.76■■□□□ 1.87
KDM2A-202ENST00000398645 ZNF777Q9ULD5 760 aaPredicted RBP26.71■■□□□ 1.87
KDM2A-202ENST00000398645 SENP3-EIF4A1A0A087X0R7 540 aa26.69■■□□□ 1.86
KDM2A-202ENST00000398645 SENP3Q9H4L4 574 aaPredicted RBP26.68■■□□□ 1.86
KDM2A-202ENST00000398645 HNRNPUQ00839 825 aaKnown RBP eCLIP26.67■■□□□ 1.86
KDM2A-202ENST00000398645 TPRNQ4KMQ1 711 aa26.62■■□□□ 1.85
KDM2A-202ENST00000398645 PABPN1Q86U42 306 aaKnown RBP eCLIP26.59■■□□□ 1.85
KDM2A-202ENST00000398645 GLIPR1L2Q4G1C9 344 aa26.58■■□□□ 1.85
KDM2A-202ENST00000398645 DDX10Q13206 875 aaKnown RBP26.57■■□□□ 1.84
KDM2A-202ENST00000398645 PLEKHG5O94827 1062 aa26.56■■□□□ 1.84
KDM2A-202ENST00000398645 CHGAP10645 457 aaKnown RBP26.56■■□□□ 1.84
KDM2A-202ENST00000398645 HIRIP3Q9BW71 556 aaPredicted RBP26.49■■□□□ 1.83
KDM2A-202ENST00000398645 UPF2Q9HAU5 1272 aaKnown RBP26.49■■□□□ 1.83
KDM2A-202ENST00000398645 RTN4Q9NQC3 1192 aaKnown RBP26.49■■□□□ 1.83
KDM2A-202ENST00000398645 CCDC136Q96JN2 1154 aa26.45■■□□□ 1.82
KDM2A-202ENST00000398645 SCAF1Q9H7N4 1312 aaKnown RBP26.42■■□□□ 1.82
KDM2A-202ENST00000398645 A0A0G2JS52 829 aa26.37■■□□□ 1.81
KDM2A-202ENST00000398645 TULP1O00294 542 aaPredicted RBP26.35■■□□□ 1.81
KDM2A-202ENST00000398645 ZBTB7CA1YPR0 619 aa26.3■■□□□ 1.8
KDM2A-202ENST00000398645 AMER1Q5JTC6 1135 aaPredicted RBP26.29■■□□□ 1.8
KDM2A-202ENST00000398645 TAOK2Q9UL54 1235 aa26.27■■□□□ 1.8
KDM2A-202ENST00000398645 STAG3Q9UJ98 1225 aa26.26■■□□□ 1.79
KDM2A-202ENST00000398645 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.23■■□□□ 1.794e-7■■■■□ 24
KDM2A-202ENST00000398645 NCLP19338 710 aaKnown RBP26.22■■□□□ 1.79
KDM2A-202ENST00000398645 KDM2AQ9Y2K7 1162 aa26.22■■□□□ 1.79
KDM2A-202ENST00000398645 CHIC2Q9UKJ5 165 aa26.22■■□□□ 1.79
KDM2A-202ENST00000398645 TMC1Q8TDI8 760 aa26.2■■□□□ 1.78
KDM2A-202ENST00000398645 TONSLQ96HA7 1378 aa26.19■■□□□ 1.78
KDM2A-202ENST00000398645 MIER1Q8N108 512 aa26.16■■□□□ 1.78
KDM2A-202ENST00000398645 WDR43Q15061 677 aaKnown RBP eCLIP26.11■■□□□ 1.77
KDM2A-202ENST00000398645 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.1■■□□□ 1.77
KDM2A-202ENST00000398645 MRS2Q9HD23 443 aa26.1■■□□□ 1.77
KDM2A-202ENST00000398645 CDK11BP21127 795 aaKnown RBP26.09■■□□□ 1.77
KDM2A-202ENST00000398645 LAS1LQ9Y4W2 734 aaKnown RBP26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms