RNA–Protein interactions for RNA: ENST00000357058.7

RNF38-204, Transcript of ring finger protein 38, humanhuman

APPRIS P1 TSL 5 BASIC

Gene RNF38, Length 5,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38-204ENST00000357058 NISCHQ9Y2I1 1504 aa37.3■■■■□ 3.56
RNF38-204ENST00000357058 DCAF8L2P0C7V8 631 aa36.06■■■■□ 3.36
RNF38-204ENST00000357058 SHROOM4Q9ULL8 1493 aa34.36■■■■□ 3.09
RNF38-204ENST00000357058 SUPT5HO00267 1087 aaKnown RBP34.35■■■■□ 3.09
RNF38-204ENST00000357058 EHMT2Q96KQ7 1210 aa32.64■■■□□ 2.82
RNF38-204ENST00000357058 FAM9AQ8IZU1 332 aaPredicted RBP32.2■■■□□ 2.75
RNF38-204ENST00000357058 TRIM41Q8WV44 630 aa31.93■■■□□ 2.7
RNF38-204ENST00000357058 APLP2Q06481 763 aa31.71■■■□□ 2.67
RNF38-204ENST00000357058 ABCC9O60706 1549 aa31.65■■■□□ 2.66
RNF38-204ENST00000357058 PCGF6Q9BYE7 350 aa31.52■■■□□ 2.64
RNF38-204ENST00000357058 TTBK1Q5TCY1 1321 aaPredicted RBP31.45■■■□□ 2.63
RNF38-204ENST00000357058 RANGAP1P46060 587 aaPredicted RBP31.35■■■□□ 2.61
RNF38-204ENST00000357058 UBTFP17480 764 aaKnown RBP31.24■■■□□ 2.59
RNF38-204ENST00000357058 CHIC1Q5VXU3 224 aa31.22■■■□□ 2.59
RNF38-204ENST00000357058 CCDC180Q9P1Z9 1646 aa31.04■■■□□ 2.56
RNF38-204ENST00000357058 PABPN1Q86U42 306 aaKnown RBP eCLIP31.04■■■□□ 2.56
RNF38-204ENST00000357058 ZCCHC6Q5VYS8 1495 aaKnown RBP31.03■■■□□ 2.56
RNF38-204ENST00000357058 LOC105371045A0A1W2PR82 267 aa30.87■■■□□ 2.53
RNF38-204ENST00000357058 ATP1B4Q9UN42 357 aaPredicted RBP30.86■■■□□ 2.53
RNF38-204ENST00000357058 PPARGC1BQ86YN6 1023 aaKnown RBP30.73■■■□□ 2.51
RNF38-204ENST00000357058 CCER1Q8TC90 406 aaPredicted RBP30.72■■■□□ 2.51
RNF38-204ENST00000357058 ZEB1P37275 1124 aaPredicted RBP30.68■■■□□ 2.5
RNF38-204ENST00000357058 SCRIBQ14160 1630 aa30.58■■■□□ 2.49
RNF38-204ENST00000357058 TRIM26Q12899 539 aaPredicted RBP30.55■■■□□ 2.48
RNF38-204ENST00000357058 HRCP23327 699 aa30.06■■■□□ 2.4
RNF38-204ENST00000357058 ITGAEP38570 1179 aa29.99■■■□□ 2.39
RNF38-204ENST00000357058 RB1CC1Q8TDY2 1594 aa29.96■■■□□ 2.39
RNF38-204ENST00000357058 PELP1Q8IZL8 1130 aaKnown RBP29.96■■■□□ 2.39
RNF38-204ENST00000357058 HNRNPUL2Q1KMD3 747 aaKnown RBP29.94■■■□□ 2.38
RNF38-204ENST00000357058 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.91■■■□□ 2.38
RNF38-204ENST00000357058 NACADO15069 1562 aa29.85■■■□□ 2.37
RNF38-204ENST00000357058 CENPBP07199 599 aaPredicted RBP29.84■■■□□ 2.37
RNF38-204ENST00000357058 DCAF1Q9Y4B6 1507 aa29.75■■■□□ 2.35
RNF38-204ENST00000357058 CSRNP3Q8WYN3 585 aa29.72■■■□□ 2.35
RNF38-204ENST00000357058 RSF1Q96T23 1441 aaPredicted RBP29.68■■■□□ 2.34
RNF38-204ENST00000357058 YTHDC1Q96MU7 727 aaKnown RBP29.53■■■□□ 2.32
RNF38-204ENST00000357058 FAM50AQ14320 339 aaKnown RBP29.45■■■□□ 2.31
RNF38-204ENST00000357058 MYT1LQ9UL68 1186 aa29.4■■■□□ 2.3
RNF38-204ENST00000357058 FBLN2P98095 1184 aa29.32■■■□□ 2.28
RNF38-204ENST00000357058 P3H3Q8IVL6 736 aa29.29■■■□□ 2.28
RNF38-204ENST00000357058 CECR2Q9BXF3 1484 aa29.25■■■□□ 2.27
RNF38-204ENST00000357058 BAZ1AQ9NRL2 1556 aaPredicted RBP29.18■■■□□ 2.26
RNF38-204ENST00000357058 MYO15BQ96JP2 1530 aa29.18■■■□□ 2.26
RNF38-204ENST00000357058 BAZ1BQ9UIG0 1483 aaKnown RBP29.13■■■□□ 2.25
RNF38-204ENST00000357058 POLR3GLQ9BT43 218 aa29.09■■■□□ 2.25
RNF38-204ENST00000357058 TRIM52Q96A61 297 aa29.07■■■□□ 2.24
RNF38-204ENST00000357058 NEFLP07196 543 aa29.07■■■□□ 2.24
RNF38-204ENST00000357058 DIEXFQ68CQ4 756 aaKnown RBP29.01■■■□□ 2.23
RNF38-204ENST00000357058 ARID3CA6NKF2 412 aa29■■■□□ 2.23
RNF38-204ENST00000357058 NEUROD1Q13562 356 aa28.99■■■□□ 2.23
RNF38-204ENST00000357058 WRNQ14191 1432 aaPredicted RBP eCLIP28.94■■■□□ 2.22
RNF38-204ENST00000357058 MROH2BQ7Z745 1585 aa28.92■■■□□ 2.22
RNF38-204ENST00000357058 EEA1Q15075 1411 aa28.85■■■□□ 2.21
RNF38-204ENST00000357058 CNGB1Q14028 1251 aaPredicted RBP28.81■■■□□ 2.2
RNF38-204ENST00000357058 CLIP1P30622 1438 aa28.77■■■□□ 2.2
RNF38-204ENST00000357058 GOLGA3Q08378 1498 aa28.74■■■□□ 2.19
RNF38-204ENST00000357058 CDK11AQ9UQ88 783 aaPredicted RBP28.71■■■□□ 2.19
RNF38-204ENST00000357058 CEP162Q5TB80 1403 aa28.68■■■□□ 2.18
RNF38-204ENST00000357058 ZNF777Q9ULD5 760 aaPredicted RBP28.65■■■□□ 2.18
RNF38-204ENST00000357058 CCDC88BA6NC98 1476 aa28.64■■■□□ 2.18
RNF38-204ENST00000357058 ZNF316A6NFI3 1004 aaPredicted RBP28.63■■■□□ 2.17
RNF38-204ENST00000357058 ERICH6Q7L0X2 663 aa28.59■■■□□ 2.17
RNF38-204ENST00000357058 KIF27Q86VH2 1401 aa28.58■■■□□ 2.17
RNF38-204ENST00000357058 ZNF326Q5BKZ1 582 aaKnown RBP28.57■■■□□ 2.16
RNF38-204ENST00000357058 WIZO95785 1651 aa28.55■■■□□ 2.16
RNF38-204ENST00000357058 TNIKQ9UKE5 1360 aa28.55■■■□□ 2.16
RNF38-204ENST00000357058 CEP164Q9UPV0 1460 aa28.53■■■□□ 2.16
RNF38-204ENST00000357058 SMARCA2P51531 1590 aa28.5■■■□□ 2.15
RNF38-204ENST00000357058 CHMP7Q8WUX9 453 aaPredicted RBP28.49■■■□□ 2.15
RNF38-204ENST00000357058 SOGA1O94964 1423 aa28.45■■■□□ 2.15
RNF38-204ENST00000357058 TOP2AP11388 1531 aaKnown RBP28.44■■■□□ 2.14
RNF38-204ENST00000357058 SLC4A1APQ9BWU0 796 aaKnown RBP28.42■■■□□ 2.14
RNF38-204ENST00000357058 ABCC8Q09428 1581 aa28.42■■■□□ 2.14
RNF38-204ENST00000357058 MTUS2Q5JR59 1369 aa28.41■■■□□ 2.14
RNF38-204ENST00000357058 ANP32CO43423 234 aa28.35■■■□□ 2.13
RNF38-204ENST00000357058 CHIC2Q9UKJ5 165 aa28.32■■■□□ 2.12
RNF38-204ENST00000357058 SMARCA4P51532 1647 aa28.29■■■□□ 2.12
RNF38-204ENST00000357058 CUX2O14529 1486 aa28.24■■■□□ 2.11
RNF38-204ENST00000357058 TONSLQ96HA7 1378 aa28.24■■■□□ 2.11
RNF38-204ENST00000357058 ATAD2BQ9ULI0 1458 aa28.21■■■□□ 2.11
RNF38-204ENST00000357058 ERCC6Q03468 1493 aa28.18■■■□□ 2.1
RNF38-204ENST00000357058 CARMIL1Q5VZK9 1371 aa28.16■■■□□ 2.1
RNF38-204ENST00000357058 NPM1P06748 294 aaKnown RBP eCLIP28.13■■■□□ 2.09
RNF38-204ENST00000357058 TSPY4P0CV99 314 aa28.05■■■□□ 2.08
RNF38-204ENST00000357058 TSPY10P0CW01 314 aa28.05■■■□□ 2.08
RNF38-204ENST00000357058 GTF3C3Q9Y5Q9 886 aa28.05■■■□□ 2.08
RNF38-204ENST00000357058 RRP7BPQ9NSQ0 103 aa28.01■■■□□ 2.07
RNF38-204ENST00000357058 CADPSQ9ULU8 1353 aa27.99■■■□□ 2.07
RNF38-204ENST00000357058 PDS5BQ9NTI5 1447 aa27.98■■■□□ 2.07
RNF38-204ENST00000357058 PLEKHD1A6NEE1 506 aa27.97■■■□□ 2.07
RNF38-204ENST00000357058 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.96■■■□□ 2.07
RNF38-204ENST00000357058 FHAD1B1AJZ9 1412 aa27.92■■■□□ 2.06
RNF38-204ENST00000357058 DDX10Q13206 875 aaKnown RBP27.91■■■□□ 2.06
RNF38-204ENST00000357058 VPS8Q8N3P4 1428 aa27.9■■■□□ 2.06
RNF38-204ENST00000357058 EIF4G1Q04637 1599 aaKnown RBP27.89■■■□□ 2.06
RNF38-204ENST00000357058 ACIN1Q9UKV3 1341 aaKnown RBP27.89■■■□□ 2.05
RNF38-204ENST00000357058 KCNH8Q96L42 1107 aa27.88■■■□□ 2.05
RNF38-204ENST00000357058 BCANQ96GW7 911 aa27.87■■■□□ 2.05
RNF38-204ENST00000357058 TDRD9Q8NDG6 1382 aaKnown RBP27.84■■■□□ 2.05
RNF38-204ENST00000357058 CHGAP10645 457 aaKnown RBP27.83■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 271.9 ms