RNA–Protein interactions for RNA: ENST00000474576.5

MKRN1-208, Transcript of makorin ring finger protein 1, human

TSL 5 BASIC

Gene MKRN1, Length 1,661 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MKRN1-208	ENST00000474576	NISCH	Q9Y2I1	1504 aa		45.85	■■■■■ 4.93
MKRN1-208	ENST00000474576	CCDC180	Q9P1Z9	1646 aa		40.14	■■■■■ 4.02
MKRN1-208	ENST00000474576	ZCCHC6	Q5VYS8	1495 aa	Known RBP	38.53	■■■■□ 3.76
MKRN1-208	ENST00000474576	ABCC9	O60706	1549 aa		38.53	■■■■□ 3.76
MKRN1-208	ENST00000474576	DCAF1	Q9Y4B6	1507 aa		37.99	■■■■□ 3.67
MKRN1-208	ENST00000474576	DCAF8L2	P0C7V8	631 aa		37.58	■■■■□ 3.61
MKRN1-208	ENST00000474576	MYO15B	Q96JP2	1530 aa		37.56	■■■■□ 3.6
MKRN1-208	ENST00000474576	NACAD	O15069	1562 aa		37.29	■■■■□ 3.56
MKRN1-208	ENST00000474576	SHROOM4	Q9ULL8	1493 aa		37.18	■■■■□ 3.54
MKRN1-208	ENST00000474576	RB1CC1	Q8TDY2	1594 aa		37.16	■■■■□ 3.54
MKRN1-208	ENST00000474576	SCRIB	Q14160	1630 aa		36.74	■■■■□ 3.47
MKRN1-208	ENST00000474576	UNC13A	Q9UPW8	1703 aa		36.5	■■■■□ 3.43
MKRN1-208	ENST00000474576	BICRA	Q9NZM4	1560 aa		36.18	■■■■□ 3.38
MKRN1-208	ENST00000474576	PABPN1	Q86U42	306 aa	Known RBP eCLIP	36.11	■■■■□ 3.37
MKRN1-208	ENST00000474576	SUPT5H	O00267	1087 aa	Known RBP	35.74	■■■■□ 3.31
MKRN1-208	ENST00000474576	CECR2	Q9BXF3	1484 aa		35.55	■■■■□ 3.28
MKRN1-208	ENST00000474576	RSF1	Q96T23	1441 aa	Predicted RBP	35.5	■■■■□ 3.27
MKRN1-208	ENST00000474576	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	35.43	■■■■□ 3.26
MKRN1-208	ENST00000474576	MROH2B	Q7Z745	1585 aa		35.39	■■■■□ 3.26
MKRN1-208	ENST00000474576	SMARCA4	P51532	1647 aa		35.29	■■■■□ 3.24
MKRN1-208	ENST00000474576	WIZ	O95785	1651 aa		35.15	■■■■□ 3.22
MKRN1-208	ENST00000474576	EIF4G1	Q04637	1599 aa	Known RBP	35.11	■■■■□ 3.21
MKRN1-208	ENST00000474576	DNAJC5B	Q9UF47	199 aa		35.07	■■■■□ 3.2
MKRN1-208	ENST00000474576	PEG3	Q9GZU2	1588 aa		34.9	■■■■□ 3.18
MKRN1-208	ENST00000474576	CC2D2A	Q9P2K1	1620 aa		34.87	■■■■□ 3.17
MKRN1-208	ENST00000474576	TOP2A	P11388	1531 aa	Known RBP	34.79	■■■■□ 3.16
MKRN1-208	ENST00000474576	SMARCA2	P51531	1590 aa		34.67	■■■■□ 3.14
MKRN1-208	ENST00000474576	ATAD2B	Q9ULI0	1458 aa		34.64	■■■■□ 3.14
MKRN1-208	ENST00000474576	BAZ1B	Q9UIG0	1483 aa	Known RBP	34.43	■■■■□ 3.1
MKRN1-208	ENST00000474576	NCAPD3	P42695	1498 aa		34.4	■■■■□ 3.1
MKRN1-208	ENST00000474576	HMGXB3	Q12766	1538 aa		34.39	■■■■□ 3.1
MKRN1-208	ENST00000474576	CCDC88B	A6NC98	1476 aa		34.36	■■■■□ 3.09
MKRN1-208	ENST00000474576	CHIC1	Q5VXU3	224 aa		34.29	■■■■□ 3.08
MKRN1-208	ENST00000474576	PRDM2	Q13029	1718 aa		33.66	■■■□□ 2.98
MKRN1-208	ENST00000474576	TRIM41	Q8WV44	630 aa		33.66	■■■□□ 2.98
MKRN1-208	ENST00000474576	ABCC8	Q09428	1581 aa		33.64	■■■□□ 2.98
MKRN1-208	ENST00000474576	CFTR	P13569	1480 aa		33.59	■■■□□ 2.97
MKRN1-208	ENST00000474576	NES	P48681	1621 aa		33.54	■■■□□ 2.96
MKRN1-208	ENST00000474576	CADPS	Q9ULU8	1353 aa		33.43	■■■□□ 2.94
MKRN1-208	ENST00000474576	WRN	Q14191	1432 aa	Predicted RBP eCLIP	33.41	■■■□□ 2.94
MKRN1-208	ENST00000474576	LAMC3	Q9Y6N6	1575 aa		33.38	■■■□□ 2.93
MKRN1-208	ENST00000474576	SYNJ1	O43426	1573 aa		33.34	■■■□□ 2.93
MKRN1-208	ENST00000474576	BIVM-ERCC5	R4GMW8	1640 aa		33.27	■■■□□ 2.92
MKRN1-208	ENST00000474576	TOP2B	Q02880	1626 aa		33.25	■■■□□ 2.91
MKRN1-208	ENST00000474576	KIF21A	Q7Z4S6	1674 aa		33.13	■■■□□ 2.89
MKRN1-208	ENST00000474576	CUX1	P39880	1505 aa		33.11	■■■□□ 2.89
MKRN1-208	ENST00000474576	PDS5B	Q9NTI5	1447 aa		33.1	■■■□□ 2.89
MKRN1-208	ENST00000474576	FANCD2	Q9BXW9	1451 aa		33.08	■■■□□ 2.89
MKRN1-208	ENST00000474576	ERCC6	Q03468	1493 aa		33.06	■■■□□ 2.88
MKRN1-208	ENST00000474576	EEA1	Q15075	1411 aa		32.99	■■■□□ 2.87
MKRN1-208	ENST00000474576	FAM9A	Q8IZU1	332 aa	Predicted RBP	32.96	■■■□□ 2.87
MKRN1-208	ENST00000474576	SOGA1	O94964	1423 aa		32.95	■■■□□ 2.87
MKRN1-208	ENST00000474576	CEP164	Q9UPV0	1460 aa		32.92	■■■□□ 2.86
MKRN1-208	ENST00000474576	LOC105371045	A0A1W2PR82	267 aa		32.91	■■■□□ 2.86
MKRN1-208	ENST00000474576	THOC2	Q8NI27	1593 aa	Known RBP	32.88	■■■□□ 2.85
MKRN1-208	ENST00000474576	DNMBP	Q6XZF7	1577 aa		32.86	■■■□□ 2.85
MKRN1-208	ENST00000474576	RUSC2	Q8N2Y8	1516 aa		32.85	■■■□□ 2.85
MKRN1-208	ENST00000474576	MRC2	Q9UBG0	1479 aa		32.79	■■■□□ 2.84
MKRN1-208	ENST00000474576	TOPBP1	Q92547	1522 aa		32.75	■■■□□ 2.83
MKRN1-208	ENST00000474576	URB2	Q14146	1524 aa	Known RBP	32.74	■■■□□ 2.83
MKRN1-208	ENST00000474576	FGD5	Q6ZNL6	1462 aa		32.72	■■■□□ 2.83
MKRN1-208	ENST00000474576	WDR62	O43379	1518 aa		32.69	■■■□□ 2.82
MKRN1-208	ENST00000474576	CSRNP3	Q8WYN3	585 aa		32.69	■■■□□ 2.82
MKRN1-208	ENST00000474576	KIF21B	O75037	1637 aa		32.63	■■■□□ 2.81
MKRN1-208	ENST00000474576	KIF27	Q86VH2	1401 aa		32.58	■■■□□ 2.81
MKRN1-208	ENST00000474576	POLA1	P09884	1462 aa	Predicted RBP	32.57	■■■□□ 2.8
MKRN1-208	ENST00000474576	CUX2	O14529	1486 aa		32.54	■■■□□ 2.8
MKRN1-208	ENST00000474576	GOLGA3	Q08378	1498 aa		32.5	■■■□□ 2.79
MKRN1-208	ENST00000474576	WDR97	A6NE52	1622 aa		32.5	■■■□□ 2.79
MKRN1-208	ENST00000474576	ABCA10	Q8WWZ4	1543 aa		32.47	■■■□□ 2.79
MKRN1-208	ENST00000474576	EHMT2	Q96KQ7	1210 aa		32.43	■■■□□ 2.78
MKRN1-208	ENST00000474576	RAD54L2	Q9Y4B4	1467 aa		32.41	■■■□□ 2.78
MKRN1-208	ENST00000474576	ERICH3	Q5RHP9	1530 aa		32.39	■■■□□ 2.78
MKRN1-208	ENST00000474576	PRX	Q9BXM0	1461 aa		32.39	■■■□□ 2.77
MKRN1-208	ENST00000474576	TNIK	Q9UKE5	1360 aa		32.38	■■■□□ 2.77
MKRN1-208	ENST00000474576	TARBP1	Q13395	1621 aa	Known RBP	32.32	■■■□□ 2.76
MKRN1-208	ENST00000474576	RAPGEF2	Q9Y4G8	1499 aa		32.31	■■■□□ 2.76
MKRN1-208	ENST00000474576	ABCA5	Q8WWZ7	1642 aa		32.28	■■■□□ 2.76
MKRN1-208	ENST00000474576	IGF1R	P08069	1367 aa		32.25	■■■□□ 2.75
MKRN1-208	ENST00000474576	UBTF	P17480	764 aa	Known RBP	32.21	■■■□□ 2.75
MKRN1-208	ENST00000474576	IFT140	Q96RY7	1462 aa		32.19	■■■□□ 2.74
MKRN1-208	ENST00000474576	CEP162	Q5TB80	1403 aa		32.19	■■■□□ 2.74
MKRN1-208	ENST00000474576	CUL7	Q14999	1698 aa		32.18	■■■□□ 2.74
MKRN1-208	ENST00000474576	ZNF608	Q9ULD9	1512 aa	Predicted RBP	32.14	■■■□□ 2.74
MKRN1-208	ENST00000474576	GAPVD1	Q14C86	1478 aa		32.1	■■■□□ 2.73
MKRN1-208	ENST00000474576	CARMIL1	Q5VZK9	1371 aa		32.09	■■■□□ 2.73
MKRN1-208	ENST00000474576	PBRM1	Q86U86	1689 aa		32.08	■■■□□ 2.73
MKRN1-208	ENST00000474576	TDRD9	Q8NDG6	1382 aa	Known RBP	32.05	■■■□□ 2.72
MKRN1-208	ENST00000474576	AQR	O60306	1485 aa	Known RBP eCLIP	31.99	■■■□□ 2.71	3e-7	■■■□□ 17.1
MKRN1-208	ENST00000474576	EIF4G3	O43432	1585 aa	Known RBP	31.99	■■■□□ 2.71
MKRN1-208	ENST00000474576	CLIP1	P30622	1438 aa		31.93	■■■□□ 2.7
MKRN1-208	ENST00000474576	CTTNBP2	Q8WZ74	1663 aa		31.87	■■■□□ 2.69
MKRN1-208	ENST00000474576	GRIN2B	Q13224	1484 aa		31.86	■■■□□ 2.69
MKRN1-208	ENST00000474576	ADAMTS12	P58397	1594 aa		31.83	■■■□□ 2.69
MKRN1-208	ENST00000474576	FHAD1	B1AJZ9	1412 aa		31.76	■■■□□ 2.67
MKRN1-208	ENST00000474576	VPS8	Q8N3P4	1428 aa		31.69	■■■□□ 2.66
MKRN1-208	ENST00000474576	SNAPC4	Q5SXM2	1469 aa		31.67	■■■□□ 2.66
MKRN1-208	ENST00000474576	ARAP1	Q96P48	1450 aa		31.67	■■■□□ 2.66
MKRN1-208	ENST00000474576	ARHGAP35	Q9NRY4	1499 aa		31.66	■■■□□ 2.66
MKRN1-208	ENST00000474576	MAGI1	Q96QZ7	1491 aa	Predicted RBP	31.63	■■■□□ 2.65

Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms