RNA–Protein interactions for RNA: ENST00000417996.2

KRT3-201, Transcript of keratin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KRT3, Length 2,319 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KRT3-201ENST00000417996 NISCHQ9Y2I1 1504 aa42.3■■■■■ 4.36
KRT3-201ENST00000417996 SHROOM4Q9ULL8 1493 aa36.16■■■■□ 3.38
KRT3-201ENST00000417996 CCDC180Q9P1Z9 1646 aa35.95■■■■□ 3.35
KRT3-201ENST00000417996 ZCCHC6Q5VYS8 1495 aaKnown RBP35.78■■■■□ 3.32
KRT3-201ENST00000417996 SUPT5HO00267 1087 aaKnown RBP35.45■■■■□ 3.27
KRT3-201ENST00000417996 DCAF8L2P0C7V8 631 aa35.16■■■■□ 3.22
KRT3-201ENST00000417996 DCAF1Q9Y4B6 1507 aa34.67■■■■□ 3.14
KRT3-201ENST00000417996 CHIC1Q5VXU3 224 aa34.43■■■■□ 3.1
KRT3-201ENST00000417996 MYO15BQ96JP2 1530 aa34.32■■■■□ 3.08
KRT3-201ENST00000417996 ABCC9O60706 1549 aa33.78■■■■□ 3
KRT3-201ENST00000417996 SCRIBQ14160 1630 aa33.77■■■■□ 3
KRT3-201ENST00000417996 RSF1Q96T23 1441 aaPredicted RBP33.49■■■□□ 2.95
KRT3-201ENST00000417996 LOC105371045A0A1W2PR82 267 aa33.44■■■□□ 2.94
KRT3-201ENST00000417996 PCGF6Q9BYE7 350 aa33.4■■■□□ 2.94
KRT3-201ENST00000417996 HRCP23327 699 aa33.37■■■□□ 2.93
KRT3-201ENST00000417996 NACADO15069 1562 aa33.24■■■□□ 2.91
KRT3-201ENST00000417996 RB1CC1Q8TDY2 1594 aa33.17■■■□□ 2.9
KRT3-201ENST00000417996 CECR2Q9BXF3 1484 aa33.03■■■□□ 2.88
KRT3-201ENST00000417996 TRIM41Q8WV44 630 aa33■■■□□ 2.87
KRT3-201ENST00000417996 MROH2BQ7Z745 1585 aa32.91■■■□□ 2.86
KRT3-201ENST00000417996 FAM9AQ8IZU1 332 aaPredicted RBP32.77■■■□□ 2.84
KRT3-201ENST00000417996 WIZO95785 1651 aa32.75■■■□□ 2.83
KRT3-201ENST00000417996 TRIM26Q12899 539 aaPredicted RBP32.73■■■□□ 2.83
KRT3-201ENST00000417996 PPARGC1BQ86YN6 1023 aaKnown RBP32.73■■■□□ 2.83
KRT3-201ENST00000417996 EHMT2Q96KQ7 1210 aa32.53■■■□□ 2.8
KRT3-201ENST00000417996 BAZ1AQ9NRL2 1556 aaPredicted RBP32.52■■■□□ 2.8
KRT3-201ENST00000417996 EIF4G1Q04637 1599 aaKnown RBP32.27■■■□□ 2.76
KRT3-201ENST00000417996 UNC13AQ9UPW8 1703 aa32.25■■■□□ 2.75
KRT3-201ENST00000417996 SMARCA4P51532 1647 aa32.23■■■□□ 2.75
KRT3-201ENST00000417996 TOP2AP11388 1531 aaKnown RBP32.21■■■□□ 2.75
KRT3-201ENST00000417996 CCDC88BA6NC98 1476 aa32.09■■■□□ 2.73
KRT3-201ENST00000417996 SMARCA2P51531 1590 aa32.04■■■□□ 2.72
KRT3-201ENST00000417996 ABCC8Q09428 1581 aa32.03■■■□□ 2.72
KRT3-201ENST00000417996 ZEB1P37275 1124 aaPredicted RBP31.99■■■□□ 2.71
KRT3-201ENST00000417996 PABPN1Q86U42 306 aaKnown RBP eCLIP31.93■■■□□ 2.7
KRT3-201ENST00000417996 BICRAQ9NZM4 1560 aa31.83■■■□□ 2.69
KRT3-201ENST00000417996 SOGA1O94964 1423 aa31.73■■■□□ 2.67
KRT3-201ENST00000417996 CEP162Q5TB80 1403 aa31.58■■■□□ 2.65
KRT3-201ENST00000417996 RUSC2Q8N2Y8 1516 aa31.57■■■□□ 2.64
KRT3-201ENST00000417996 PEG3Q9GZU2 1588 aa31.57■■■□□ 2.64
KRT3-201ENST00000417996 CSRNP3Q8WYN3 585 aa31.53■■■□□ 2.64
KRT3-201ENST00000417996 EEA1Q15075 1411 aa31.52■■■□□ 2.64
KRT3-201ENST00000417996 TNIKQ9UKE5 1360 aa31.51■■■□□ 2.63
KRT3-201ENST00000417996 WRNQ14191 1432 aaPredicted RBP eCLIP31.5■■■□□ 2.63
KRT3-201ENST00000417996 TTBK1Q5TCY1 1321 aaPredicted RBP31.48■■■□□ 2.63
KRT3-201ENST00000417996 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.47■■■□□ 2.63
KRT3-201ENST00000417996 UBTFP17480 764 aaKnown RBP31.45■■■□□ 2.63
KRT3-201ENST00000417996 ATAD2BQ9ULI0 1458 aa31.4■■■□□ 2.62
KRT3-201ENST00000417996 CCER1Q8TC90 406 aaPredicted RBP31.38■■■□□ 2.61
KRT3-201ENST00000417996 GOLGA3Q08378 1498 aa31.34■■■□□ 2.61
KRT3-201ENST00000417996 BAZ1BQ9UIG0 1483 aaKnown RBP31.33■■■□□ 2.61
KRT3-201ENST00000417996 SYNJ1O43426 1573 aa31.33■■■□□ 2.61
KRT3-201ENST00000417996 CEP164Q9UPV0 1460 aa31.15■■■□□ 2.58
KRT3-201ENST00000417996 KIF21BO75037 1637 aa31.11■■■□□ 2.57
KRT3-201ENST00000417996 CLIP1P30622 1438 aa30.99■■■□□ 2.55
KRT3-201ENST00000417996 RAPGEF2Q9Y4G8 1499 aa30.94■■■□□ 2.54
KRT3-201ENST00000417996 TOP2BQ02880 1626 aa30.92■■■□□ 2.54
KRT3-201ENST00000417996 RANGAP1P46060 587 aaPredicted RBP30.87■■■□□ 2.53
KRT3-201ENST00000417996 VPS8Q8N3P4 1428 aa30.84■■■□□ 2.53
KRT3-201ENST00000417996 BIVM-ERCC5R4GMW8 1640 aa30.8■■■□□ 2.52
KRT3-201ENST00000417996 HNRNPUL2Q1KMD3 747 aaKnown RBP30.76■■■□□ 2.52
KRT3-201ENST00000417996 HMGXB3Q12766 1538 aa30.76■■■□□ 2.51
KRT3-201ENST00000417996 NCAPD3P42695 1498 aa30.76■■■□□ 2.51
KRT3-201ENST00000417996 SCAF1Q9H7N4 1312 aaKnown RBP30.75■■■□□ 2.51
KRT3-201ENST00000417996 APLP2Q06481 763 aa30.74■■■□□ 2.51
KRT3-201ENST00000417996 DIEXFQ68CQ4 756 aaKnown RBP30.74■■■□□ 2.51
KRT3-201ENST00000417996 CUX1P39880 1505 aa30.64■■■□□ 2.49
KRT3-201ENST00000417996 PRXQ9BXM0 1461 aa30.61■■■□□ 2.49
KRT3-201ENST00000417996 ERICH3Q5RHP9 1530 aa30.6■■■□□ 2.49
KRT3-201ENST00000417996 CFTRP13569 1480 aa30.53■■■□□ 2.48
KRT3-201ENST00000417996 ZNF316A6NFI3 1004 aaPredicted RBP30.51■■■□□ 2.48
KRT3-201ENST00000417996 KIF27Q86VH2 1401 aa30.49■■■□□ 2.47
KRT3-201ENST00000417996 ARAP1Q96P48 1450 aa30.49■■■□□ 2.47
KRT3-201ENST00000417996 ACIN1Q9UKV3 1341 aaKnown RBP30.47■■■□□ 2.47
KRT3-201ENST00000417996 NEUROD1Q13562 356 aa30.45■■■□□ 2.46
KRT3-201ENST00000417996 KANK4Q5T7N3 995 aaPredicted RBP30.35■■■□□ 2.45
KRT3-201ENST00000417996 CENPBP07199 599 aaPredicted RBP30.31■■■□□ 2.44
KRT3-201ENST00000417996 PRDM2Q13029 1718 aa30.29■■■□□ 2.44
KRT3-201ENST00000417996 CUX2O14529 1486 aa30.22■■■□□ 2.43
KRT3-201ENST00000417996 ARHGAP35Q9NRY4 1499 aa30.22■■■□□ 2.43
KRT3-201ENST00000417996 CADPSQ9ULU8 1353 aa30.2■■■□□ 2.43
KRT3-201ENST00000417996 IGF1RP08069 1367 aa30.16■■■□□ 2.42
KRT3-201ENST00000417996 GTF3C3Q9Y5Q9 886 aa30.13■■■□□ 2.41
KRT3-201ENST00000417996 DHX57Q6P158 1386 aaKnown RBP30.12■■■□□ 2.41
KRT3-201ENST00000417996 RRBP1Q9P2E9 1410 aaKnown RBP30.11■■■□□ 2.41
KRT3-201ENST00000417996 FGD5Q6ZNL6 1462 aa30.1■■■□□ 2.41
KRT3-201ENST00000417996 MIER1Q8N108 512 aa30.09■■■□□ 2.41
KRT3-201ENST00000417996 YTHDC1Q96MU7 727 aaKnown RBP30.07■■■□□ 2.4
KRT3-201ENST00000417996 CLSPNQ9HAW4 1339 aa30.05■■■□□ 2.4
KRT3-201ENST00000417996 CARMIL1Q5VZK9 1371 aa30.04■■■□□ 2.4
KRT3-201ENST00000417996 CC2D2AQ9P2K1 1620 aa30.02■■■□□ 2.4
KRT3-201ENST00000417996 PELP1Q8IZL8 1130 aaKnown RBP30.01■■■□□ 2.4
KRT3-201ENST00000417996 CCNB3Q8WWL7 1395 aa30.01■■■□□ 2.39
KRT3-201ENST00000417996 ITGAEP38570 1179 aa29.97■■■□□ 2.39
KRT3-201ENST00000417996 FANCD2Q9BXW9 1451 aa29.93■■■□□ 2.38
KRT3-201ENST00000417996 TIAM1Q13009 1591 aa29.89■■■□□ 2.38
KRT3-201ENST00000417996 P3H3Q8IVL6 736 aa29.82■■■□□ 2.36
KRT3-201ENST00000417996 MAP3K1Q13233 1512 aa29.82■■■□□ 2.36
KRT3-201ENST00000417996 RAD54L2Q9Y4B4 1467 aa29.81■■■□□ 2.36
KRT3-201ENST00000417996 LRRC9Q6ZRR7 1453 aa29.78■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms