RNA–Protein interactions for RNA: ENST00000570904.5

LITAF-205, Transcript of lipopolysaccharide induced TNF factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LITAF, Length 1,118 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-205ENST00000570904 NISCHQ9Y2I1 1504 aa51.43■■■■■ 5.82
LITAF-205ENST00000570904 CCDC180Q9P1Z9 1646 aa45.99■■■■■ 4.95
LITAF-205ENST00000570904 ABCC9O60706 1549 aa45.79■■■■■ 4.92
LITAF-205ENST00000570904 RB1CC1Q8TDY2 1594 aa43.65■■■■■ 4.58
LITAF-205ENST00000570904 NACADO15069 1562 aa43.41■■■■■ 4.54
LITAF-205ENST00000570904 DCAF8L2P0C7V8 631 aa43.31■■■■■ 4.52
LITAF-205ENST00000570904 MYO15BQ96JP2 1530 aa42.89■■■■■ 4.46
LITAF-205ENST00000570904 ZCCHC6Q5VYS8 1495 aaKnown RBP42.7■■■■■ 4.43
LITAF-205ENST00000570904 DNAJC5BQ9UF47 199 aa42.69■■■■■ 4.42
LITAF-205ENST00000570904 PABPN1Q86U42 306 aaKnown RBP eCLIP42.68■■■■■ 4.42
LITAF-205ENST00000570904 UNC13AQ9UPW8 1703 aa42.66■■■■■ 4.42
LITAF-205ENST00000570904 DCAF1Q9Y4B6 1507 aa42.46■■■■■ 4.39
LITAF-205ENST00000570904 BICRAQ9NZM4 1560 aa42.39■■■■■ 4.38
LITAF-205ENST00000570904 SCRIBQ14160 1630 aa42■■■■■ 4.31
LITAF-205ENST00000570904 SHROOM4Q9ULL8 1493 aa41.8■■■■■ 4.28
LITAF-205ENST00000570904 CC2D2AQ9P2K1 1620 aa41.34■■■■■ 4.21
LITAF-205ENST00000570904 EIF4G1Q04637 1599 aaKnown RBP41.33■■■■■ 4.21
LITAF-205ENST00000570904 CECR2Q9BXF3 1484 aa41.2■■■■■ 4.19
LITAF-205ENST00000570904 NCAPD3P42695 1498 aa40.08■■■■■ 4.01
LITAF-205ENST00000570904 SMARCA4P51532 1647 aa40.06■■■■■ 4
LITAF-205ENST00000570904 ATAD2BQ9ULI0 1458 aa40.03■■■■■ 4
LITAF-205ENST00000570904 SMARCA2P51531 1590 aa39.91■■■■□ 3.98
LITAF-205ENST00000570904 BAZ1AQ9NRL2 1556 aaPredicted RBP39.89■■■■□ 3.98
LITAF-205ENST00000570904 HMGXB3Q12766 1538 aa39.83■■■■□ 3.97
LITAF-205ENST00000570904 BAZ1BQ9UIG0 1483 aaKnown RBP39.67■■■■□ 3.94
LITAF-205ENST00000570904 MROH2BQ7Z745 1585 aa39.65■■■■□ 3.94
LITAF-205ENST00000570904 PEG3Q9GZU2 1588 aa39.64■■■■□ 3.94
LITAF-205ENST00000570904 ERCC6Q03468 1493 aa39.49■■■■□ 3.91
LITAF-205ENST00000570904 NESP48681 1621 aa39.42■■■■□ 3.9
LITAF-205ENST00000570904 CUX2O14529 1486 aa39.3■■■■□ 3.88
LITAF-205ENST00000570904 WIZO95785 1651 aa39.19■■■■□ 3.86
LITAF-205ENST00000570904 LAMC3Q9Y6N6 1575 aa39.13■■■■□ 3.85
LITAF-205ENST00000570904 THOC2Q8NI27 1593 aaKnown RBP38.95■■■■□ 3.83
LITAF-205ENST00000570904 DNAJC5Q9H3Z4 198 aa38.94■■■■□ 3.82
LITAF-205ENST00000570904 RSF1Q96T23 1441 aaPredicted RBP38.93■■■■□ 3.82
LITAF-205ENST00000570904 PDS5BQ9NTI5 1447 aa38.9■■■■□ 3.82
LITAF-205ENST00000570904 CADPSQ9ULU8 1353 aa38.9■■■■□ 3.82
LITAF-205ENST00000570904 KIF21AQ7Z4S6 1674 aa38.89■■■■□ 3.82
LITAF-205ENST00000570904 TOP2AP11388 1531 aaKnown RBP38.71■■■■□ 3.79
LITAF-205ENST00000570904 MRC2Q9UBG0 1479 aa38.58■■■■□ 3.77
LITAF-205ENST00000570904 CFTRP13569 1480 aa38.51■■■■□ 3.76
LITAF-205ENST00000570904 CEP164Q9UPV0 1460 aa38.48■■■■□ 3.75
LITAF-205ENST00000570904 FANCD2Q9BXW9 1451 aa38.47■■■■□ 3.75
LITAF-205ENST00000570904 WDR62O43379 1518 aa38.47■■■■□ 3.75
LITAF-205ENST00000570904 CCDC88BA6NC98 1476 aa38.28■■■■□ 3.72
LITAF-205ENST00000570904 URB2Q14146 1524 aaKnown RBP38.15■■■■□ 3.7
LITAF-205ENST00000570904 PRDM2Q13029 1718 aa38.12■■■■□ 3.69
LITAF-205ENST00000570904 TOPBP1Q92547 1522 aa37.77■■■■□ 3.64
LITAF-205ENST00000570904 IFT140Q96RY7 1462 aa37.69■■■■□ 3.62
LITAF-205ENST00000570904 ABCC8Q09428 1581 aa37.65■■■■□ 3.62
LITAF-205ENST00000570904 DNMBPQ6XZF7 1577 aa37.65■■■■□ 3.62
LITAF-205ENST00000570904 ZNF608Q9ULD9 1512 aaPredicted RBP37.64■■■■□ 3.62
LITAF-205ENST00000570904 OSCARQ8IYS5 282 aa37.54■■■■□ 3.6
LITAF-205ENST00000570904 SUPT5HO00267 1087 aaKnown RBP37.45■■■■□ 3.59
LITAF-205ENST00000570904 EIF4G3O43432 1585 aaKnown RBP37.43■■■■□ 3.58
LITAF-205ENST00000570904 POLA1P09884 1462 aaPredicted RBP37.42■■■■□ 3.58
LITAF-205ENST00000570904 TRIM41Q8WV44 630 aa37.42■■■■□ 3.58
LITAF-205ENST00000570904 TARBP1Q13395 1621 aaKnown RBP37.4■■■■□ 3.58
LITAF-205ENST00000570904 AQRO60306 1485 aaKnown RBP eCLIP37.33■■■■□ 3.572e-8■■■□□ 18.1
LITAF-205ENST00000570904 RAD54L2Q9Y4B4 1467 aa37.29■■■■□ 3.56
LITAF-205ENST00000570904 CUX1P39880 1505 aa37.24■■■■□ 3.55
LITAF-205ENST00000570904 SOGA1O94964 1423 aa37.23■■■■□ 3.55
LITAF-205ENST00000570904 FGD5Q6ZNL6 1462 aa37.23■■■■□ 3.55
LITAF-205ENST00000570904 TDRD9Q8NDG6 1382 aaKnown RBP37.15■■■■□ 3.54
LITAF-205ENST00000570904 CHD1O14646 1710 aa37.08■■■■□ 3.53
LITAF-205ENST00000570904 RIMBP3CA6NJZ7 1639 aa37.05■■■■□ 3.52
LITAF-205ENST00000570904 RIMBP3BA6NNM3 1639 aa37.05■■■■□ 3.52
LITAF-205ENST00000570904 RIMBP3Q9UFD9 1639 aa37.05■■■■□ 3.52
LITAF-205ENST00000570904 FBLN2P98095 1184 aa37.03■■■■□ 3.52
LITAF-205ENST00000570904 WDR97A6NE52 1622 aa37■■■■□ 3.51
LITAF-205ENST00000570904 ARHGEF11O15085 1522 aa36.97■■■■□ 3.51
LITAF-205ENST00000570904 SNAPC4Q5SXM2 1469 aa36.97■■■■□ 3.51
LITAF-205ENST00000570904 GRIN2BQ13224 1484 aa36.88■■■■□ 3.49
LITAF-205ENST00000570904 MAGI1Q96QZ7 1491 aaPredicted RBP36.84■■■■□ 3.49
LITAF-205ENST00000570904 ABCA10Q8WWZ4 1543 aa36.8■■■■□ 3.48
LITAF-205ENST00000570904 GAPVD1Q14C86 1478 aa36.79■■■■□ 3.48
LITAF-205ENST00000570904 CHMP7Q8WUX9 453 aaPredicted RBP36.78■■■■□ 3.48
LITAF-205ENST00000570904 PBRM1Q86U86 1689 aa36.75■■■■□ 3.47
LITAF-205ENST00000570904 ABCA5Q8WWZ7 1642 aa36.73■■■■□ 3.47
LITAF-205ENST00000570904 SYNJ2O15056 1496 aa36.72■■■■□ 3.47
LITAF-205ENST00000570904 WRNQ14191 1432 aaPredicted RBP eCLIP36.72■■■■□ 3.47
LITAF-205ENST00000570904 TOP2BQ02880 1626 aa36.7■■■■□ 3.47
LITAF-205ENST00000570904 SYNJ1O43426 1573 aa36.7■■■■□ 3.46
LITAF-205ENST00000570904 BIVM-ERCC5R4GMW8 1640 aa36.69■■■■□ 3.46
LITAF-205ENST00000570904 CYB5RLQ6IPT4 315 aa36.68■■■■□ 3.46
LITAF-205ENST00000570904 CLASP1Q7Z460 1538 aa36.67■■■■□ 3.46
LITAF-205ENST00000570904 ARAP1Q96P48 1450 aa36.65■■■■□ 3.46
LITAF-205ENST00000570904 ADAMTS12P58397 1594 aa36.44■■■■□ 3.42
LITAF-205ENST00000570904 GRIN2AQ12879 1464 aa36.41■■■■□ 3.42
LITAF-205ENST00000570904 ERICH3Q5RHP9 1530 aa36.34■■■■□ 3.41
LITAF-205ENST00000570904 FHAD1B1AJZ9 1412 aa36.34■■■■□ 3.41
LITAF-205ENST00000570904 CEP170Q5SW79 1584 aa36.28■■■■□ 3.4
LITAF-205ENST00000570904 NUP160Q12769 1436 aa36.28■■■■□ 3.4
LITAF-205ENST00000570904 TRHP20396 242 aaPredicted RBP36.18■■■■□ 3.38
LITAF-205ENST00000570904 ERCC6L2Q5T890 1561 aa36.16■■■■□ 3.38
LITAF-205ENST00000570904 SHROOM2Q13796 1616 aa36.06■■■■□ 3.36
LITAF-205ENST00000570904 KIF27Q86VH2 1401 aa36■■■■□ 3.35
LITAF-205ENST00000570904 IGF1RP08069 1367 aa35.95■■■■□ 3.35
LITAF-205ENST00000570904 RUSC2Q8N2Y8 1516 aa35.92■■■■□ 3.34
LITAF-205ENST00000570904 PRG4Q92954 1404 aaPredicted RBP35.91■■■■□ 3.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms