RNA–Protein interactions for RNA: ENST00000244745.3

SOX4-201, Transcript of SRY-box 4, humanhuman

APPRIS P1 BASIC

Gene SOX4, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4-201ENST00000244745 DCAF8L2P0C7V8 631 aa33.94■■■■□ 3.02
SOX4-201ENST00000244745 NISCHQ9Y2I1 1504 aa33.38■■■□□ 2.93
SOX4-201ENST00000244745 SUPT5HO00267 1087 aaKnown RBP32.93■■■□□ 2.86
SOX4-201ENST00000244745 SHROOM4Q9ULL8 1493 aa32.5■■■□□ 2.79
SOX4-201ENST00000244745 EHMT2Q96KQ7 1210 aa31.83■■■□□ 2.69
SOX4-201ENST00000244745 PELP1Q8IZL8 1130 aaKnown RBP31.28■■■□□ 2.6
SOX4-201ENST00000244745 PCGF6Q9BYE7 350 aa31.24■■■□□ 2.59
SOX4-201ENST00000244745 FAM9AQ8IZU1 332 aaPredicted RBP31.03■■■□□ 2.56
SOX4-201ENST00000244745 TTBK1Q5TCY1 1321 aaPredicted RBP30.83■■■□□ 2.53
SOX4-201ENST00000244745 APLP2Q06481 763 aa30.8■■■□□ 2.52
SOX4-201ENST00000244745 CENPBP07199 599 aaPredicted RBP30.53■■■□□ 2.48
SOX4-201ENST00000244745 ZEB1P37275 1124 aaPredicted RBP30.5■■■□□ 2.47
SOX4-201ENST00000244745 TRIM41Q8WV44 630 aa30.42■■■□□ 2.46
SOX4-201ENST00000244745 MYT1Q01538 1121 aa30.38■■■□□ 2.45
SOX4-201ENST00000244745 CCER1Q8TC90 406 aaPredicted RBP30.36■■■□□ 2.45
SOX4-201ENST00000244745 RANGAP1P46060 587 aaPredicted RBP30.23■■■□□ 2.43
SOX4-201ENST00000244745 ERICH6Q7L0X2 663 aa30.14■■■□□ 2.42
SOX4-201ENST00000244745 HRCP23327 699 aa29.97■■■□□ 2.39
SOX4-201ENST00000244745 PPARGC1BQ86YN6 1023 aaKnown RBP29.93■■■□□ 2.38
SOX4-201ENST00000244745 YTHDC1Q96MU7 727 aaKnown RBP29.92■■■□□ 2.38
SOX4-201ENST00000244745 UBTFP17480 764 aaKnown RBP29.9■■■□□ 2.38
SOX4-201ENST00000244745 TRIM26Q12899 539 aaPredicted RBP29.87■■■□□ 2.37
SOX4-201ENST00000244745 ATP1B4Q9UN42 357 aaPredicted RBP29.73■■■□□ 2.35
SOX4-201ENST00000244745 LOC105371045A0A1W2PR82 267 aa29.64■■■□□ 2.33
SOX4-201ENST00000244745 CHIC1Q5VXU3 224 aa29.59■■■□□ 2.33
SOX4-201ENST00000244745 NEFLP07196 543 aa29.49■■■□□ 2.31
SOX4-201ENST00000244745 HNRNPUL2Q1KMD3 747 aaKnown RBP29.07■■■□□ 2.24
SOX4-201ENST00000244745 ITGAEP38570 1179 aa29.07■■■□□ 2.24
SOX4-201ENST00000244745 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.01■■■□□ 2.24
SOX4-201ENST00000244745 DIEXFQ68CQ4 756 aaKnown RBP28.88■■■□□ 2.21
SOX4-201ENST00000244745 POLR3GLQ9BT43 218 aa28.68■■■□□ 2.18
SOX4-201ENST00000244745 GTF3C3Q9Y5Q9 886 aa28.66■■■□□ 2.18
SOX4-201ENST00000244745 CNGB1Q14028 1251 aaPredicted RBP28.53■■■□□ 2.16
SOX4-201ENST00000244745 DAXXQ9UER7 740 aaPredicted RBP28.48■■■□□ 2.15
SOX4-201ENST00000244745 FAM50AQ14320 339 aaKnown RBP28.31■■■□□ 2.12
SOX4-201ENST00000244745 RTL5Q5HYW3 569 aaPredicted RBP28.28■■■□□ 2.12
SOX4-201ENST00000244745 ACIN1Q9UKV3 1341 aaKnown RBP28.28■■■□□ 2.12
SOX4-201ENST00000244745 BCANQ96GW7 911 aa28.24■■■□□ 2.11
SOX4-201ENST00000244745 NEUROD1Q13562 356 aa28.23■■■□□ 2.11
SOX4-201ENST00000244745 ZNF316A6NFI3 1004 aaPredicted RBP28.18■■■□□ 2.1
SOX4-201ENST00000244745 MYT1LQ9UL68 1186 aa28.18■■■□□ 2.1
SOX4-201ENST00000244745 ABCC9O60706 1549 aa28.16■■■□□ 2.1
SOX4-201ENST00000244745 PABPN1Q86U42 306 aaKnown RBP eCLIP28.1■■■□□ 2.09
SOX4-201ENST00000244745 TRIM52Q96A61 297 aa28.04■■■□□ 2.08
SOX4-201ENST00000244745 ANP32CO43423 234 aa27.97■■■□□ 2.07
SOX4-201ENST00000244745 DCAF1Q9Y4B6 1507 aa27.95■■■□□ 2.06
SOX4-201ENST00000244745 CDK11AQ9UQ88 783 aaPredicted RBP27.88■■■□□ 2.05
SOX4-201ENST00000244745 SLC4A1APQ9BWU0 796 aaKnown RBP27.86■■■□□ 2.05
SOX4-201ENST00000244745 CLSPNQ9HAW4 1339 aa27.83■■■□□ 2.05
SOX4-201ENST00000244745 CSRNP3Q8WYN3 585 aa27.78■■■□□ 2.04
SOX4-201ENST00000244745 ZCCHC6Q5VYS8 1495 aaKnown RBP27.76■■■□□ 2.03
SOX4-201ENST00000244745 SCAF1Q9H7N4 1312 aaKnown RBP27.75■■■□□ 2.03
SOX4-201ENST00000244745 ZNF326Q5BKZ1 582 aaKnown RBP27.73■■■□□ 2.03
SOX4-201ENST00000244745 SCRIBQ14160 1630 aa27.71■■■□□ 2.03
SOX4-201ENST00000244745 MYO15BQ96JP2 1530 aa27.62■■■□□ 2.01
SOX4-201ENST00000244745 P3H3Q8IVL6 736 aa27.61■■■□□ 2.01
SOX4-201ENST00000244745 FKBP8Q14318 412 aa27.47■■□□□ 1.99
SOX4-201ENST00000244745 ARID3CA6NKF2 412 aa27.41■■□□□ 1.98
SOX4-201ENST00000244745 ANP32AP39687 249 aaKnown RBP27.39■■□□□ 1.98
SOX4-201ENST00000244745 DDX10Q13206 875 aaKnown RBP27.3■■□□□ 1.96
SOX4-201ENST00000244745 FBLN2P98095 1184 aa27.26■■□□□ 1.95
SOX4-201ENST00000244745 NPM2Q86SE8 214 aaKnown RBP27.25■■□□□ 1.95
SOX4-201ENST00000244745 TONSLQ96HA7 1378 aa27.25■■□□□ 1.95
SOX4-201ENST00000244745 CANXP27824 592 aaKnown RBP27.24■■□□□ 1.95
SOX4-201ENST00000244745 MIER1Q8N108 512 aa27.24■■□□□ 1.95
SOX4-201ENST00000244745 CCDC180Q9P1Z9 1646 aa27.23■■□□□ 1.95
SOX4-201ENST00000244745 HNRNPUQ00839 825 aaKnown RBP eCLIP27.21■■□□□ 1.95
SOX4-201ENST00000244745 EIF5BO60841 1220 aaKnown RBP27.18■■□□□ 1.94
SOX4-201ENST00000244745 ZNF777Q9ULD5 760 aaPredicted RBP27.17■■□□□ 1.94
SOX4-201ENST00000244745 FAM9BQ8IZU0 186 aa27.12■■□□□ 1.93
SOX4-201ENST00000244745 BCL11AQ9H165 835 aa27.07■■□□□ 1.92
SOX4-201ENST00000244745 ZBTB47Q9UFB7 747 aaPredicted RBP27.06■■□□□ 1.92
SOX4-201ENST00000244745 NBR1Q14596 966 aa27.05■■□□□ 1.92
SOX4-201ENST00000244745 CLIP1P30622 1438 aa26.98■■□□□ 1.91
SOX4-201ENST00000244745 HIRIP3Q9BW71 556 aaPredicted RBP26.95■■□□□ 1.9
SOX4-201ENST00000244745 CEP162Q5TB80 1403 aa26.94■■□□□ 1.9
SOX4-201ENST00000244745 CHIC2Q9UKJ5 165 aa26.94■■□□□ 1.9
SOX4-201ENST00000244745 RSF1Q96T23 1441 aaPredicted RBP26.92■■□□□ 1.9
SOX4-201ENST00000244745 IRX6P78412 446 aaPredicted RBP26.91■■□□□ 1.9
SOX4-201ENST00000244745 ANP32EQ9BTT0 268 aa26.91■■□□□ 1.9
SOX4-201ENST00000244745 SALL2Q9Y467 1007 aaPredicted RBP26.9■■□□□ 1.9
SOX4-201ENST00000244745 GOLGA3Q08378 1498 aa26.84■■□□□ 1.89
SOX4-201ENST00000244745 CCDC136Q96JN2 1154 aa26.83■■□□□ 1.89
SOX4-201ENST00000244745 NEFMP07197 916 aa26.81■■□□□ 1.88
SOX4-201ENST00000244745 MRS2Q9HD23 443 aa26.8■■□□□ 1.88
SOX4-201ENST00000244745 SLC24A1O60721 1099 aa26.8■■□□□ 1.88
SOX4-201ENST00000244745 GLIPR1L2Q4G1C9 344 aa26.78■■□□□ 1.88
SOX4-201ENST00000244745 TMC1Q8TDI8 760 aa26.77■■□□□ 1.88
SOX4-201ENST00000244745 MTUS2Q5JR59 1369 aa26.7■■□□□ 1.86
SOX4-201ENST00000244745 EEA1Q15075 1411 aa26.7■■□□□ 1.86
SOX4-201ENST00000244745 KDM2AQ9Y2K7 1162 aa26.63■■□□□ 1.85
SOX4-201ENST00000244745 TNIKQ9UKE5 1360 aa26.63■■□□□ 1.85
SOX4-201ENST00000244745 ANP32BQ92688 251 aaKnown RBP26.62■■□□□ 1.85
SOX4-201ENST00000244745 UPF2Q9HAU5 1272 aaKnown RBP26.61■■□□□ 1.85
SOX4-201ENST00000244745 CHGAP10645 457 aaKnown RBP26.6■■□□□ 1.85
SOX4-201ENST00000244745 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.6■■□□□ 1.85
SOX4-201ENST00000244745 RRP7BPQ9NSQ0 103 aa26.6■■□□□ 1.85
SOX4-201ENST00000244745 EIF4G2P78344 907 aaKnown RBP eCLIP26.59■■□□□ 1.85
SOX4-201ENST00000244745 HSP90AA1P07900 732 aaKnown RBP26.57■■□□□ 1.84
SOX4-201ENST00000244745 RB1CC1Q8TDY2 1594 aa26.57■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms