Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.031e-7■■■■□ 25.9
UPF1Q92900 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.161e-7■■■■□ 25.9
UPF1Q92900 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.161e-7■■■■□ 25.9
UPF1Q92900 SHC1-210ENST00000448116 3481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.381e-7■■■■□ 25.9
UPF1Q92900 SHC1-203ENST00000368449 2879 ntTSL 5 BASIC12.55□□□□□ -0.41e-7■■■■□ 25.9
UPF1Q92900 PYGO2-203ENST00000483463 594 ntTSL 28.9□□□□□ -0.981e-7■■■■□ 25.9
UPF1Q92900 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.059e-8■■■■□ 25.9
UPF1Q92900 UBE2G2-206ENST00000481546 4340 ntTSL 1 (best)10.53□□□□□ -0.729e-8■■■■□ 25.9
UPF1Q92900 SVIL-AS1-205ENST00000430295 440 ntTSL 231.15■■■□□ 2.589e-10■■■■□ 25.8
UPF1Q92900 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC22.34■■□□□ 1.179e-10■■■■□ 25.8
UPF1Q92900 SVIL-AS1-201ENST00000413405 767 ntTSL 1 (best)20.64■□□□□ 0.899e-10■■■■□ 25.8
UPF1Q92900 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC15.58■□□□□ 0.089e-10■■■■□ 25.8
UPF1Q92900 SVIL-AS1-207ENST00000445521 188 ntTSL 414.9□□□□□ -0.029e-10■■■■□ 25.8
UPF1Q92900 SVIL-AS1-206ENST00000438202 652 ntTSL 214.73□□□□□ -0.059e-10■■■■□ 25.8
UPF1Q92900 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC12.29□□□□□ -0.449e-10■■■■□ 25.8
UPF1Q92900 SVIL-AS1-203ENST00000423223 507 ntTSL 211.2□□□□□ -0.629e-10■■■■□ 25.8
UPF1Q92900 SVIL-AS1-209ENST00000455774 478 ntTSL 37.13□□□□□ -1.279e-10■■■■□ 25.8
UPF1Q92900 KIAA0930-216ENST00000498418 964 ntTSL 1 (best)26.75■■□□□ 1.871e-7■■■■□ 25.8
UPF1Q92900 KIAA0930-210ENST00000483374 759 ntTSL 222.17■■□□□ 1.141e-7■■■■□ 25.8
UPF1Q92900 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.533e-7■■■■□ 25.8
UPF1Q92900 AP1S1-203ENST00000443943 741 ntTSL 330.83■■■□□ 2.533e-7■■■■□ 25.8
UPF1Q92900 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC23.37■■□□□ 1.332e-6■■■■□ 25.8
UPF1Q92900 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.642e-6■■■■□ 25.8
UPF1Q92900 MOB2-206ENST00000531976 3174 ntTSL 1 (best)16.59■□□□□ 0.252e-6■■■■□ 25.8
UPF1Q92900 ZSWIM1-201ENST00000372520 2168 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.331e-7■■■■□ 25.8
UPF1Q92900 ZSWIM1-202ENST00000372523 2769 ntAPPRIS P1 TSL 2 BASIC9.63□□□□□ -0.871e-7■■■■□ 25.8
UPF1Q92900 SLC35E2B-201ENST00000480991 2860 ntTSL 214.05□□□□□ -0.161e-8■■■■□ 25.8
UPF1Q92900 AL035587.1-201ENST00000450671 679 ntTSL 3 BASIC15.99■□□□□ 0.152e-8■■■■□ 25.8
UPF1Q92900 CALU-202ENST00000449187 2438 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.453e-25■■■■□ 25.8
UPF1Q92900 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC19.34■□□□□ 0.692e-6■■■■□ 25.8
UPF1Q92900 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.89■□□□□ 0.452e-6■■■■□ 25.8
UPF1Q92900 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.122e-6■■■■□ 25.8
UPF1Q92900 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.93■□□□□ 0.143e-6■■■■□ 25.8
UPF1Q92900 DEGS1-202ENST00000391877 1345 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.512e-8■■■■□ 25.8
UPF1Q92900 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.242e-8■■■■□ 25.8
UPF1Q92900 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC17.94■□□□□ 0.461e-25■■■■□ 25.8
UPF1Q92900 RTN3-204ENST00000354497 1407 ntTSL 2 BASIC17.62■□□□□ 0.411e-25■■■■□ 25.8
UPF1Q92900 RTN3-203ENST00000341307 2524 ntTSL 2 BASIC13.67□□□□□ -0.221e-25■■■■□ 25.8
UPF1Q92900 RTN3-208ENST00000537981 2532 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.651e-25■■■■□ 25.8
UPF1Q92900 RTN3-206ENST00000377819 4937 ntTSL 1 (best) BASIC10.57□□□□□ -0.721e-25■■■■□ 25.8
UPF1Q92900 RTN3-202ENST00000339997 4886 ntTSL 1 (best) BASIC8.47□□□□□ -1.051e-25■■■■□ 25.8
UPF1Q92900 FADS2-211ENST00000522359 1654 ntTSL 423.65■■□□□ 1.383e-10■■■■□ 25.7
UPF1Q92900 TTC4-202ENST00000371284 2124 ntTSL 515.79■□□□□ 0.124e-6■■■■□ 25.7
UPF1Q92900 TTC4-201ENST00000371281 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.024e-6■■■■□ 25.7
UPF1Q92900 MROH7-TTC4-201ENST00000414150 5867 ntAPPRIS P5 TSL 2 BASIC12.53□□□□□ -0.44e-6■■■■□ 25.7
UPF1Q92900 MROH7-TTC4-202ENST00000425300 6090 ntAPPRIS ALT2 TSL 212.22□□□□□ -0.454e-6■■■■□ 25.7
UPF1Q92900 MROH7-TTC4-203ENST00000460155 3561 ntTSL 211.48□□□□□ -0.574e-6■■■■□ 25.7
UPF1Q92900 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.326e-8■■■■□ 25.7
UPF1Q92900 ELMSAN1-208ENST00000476562 5314 ntTSL 221.83■■□□□ 1.088e-7■■■■□ 25.7
UPF1Q92900 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.118e-7■■■■□ 25.7
UPF1Q92900 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -08e-7■■■■□ 25.7
UPF1Q92900 PINK1-AS-201ENST00000451424 4443 ntTSL 2 BASIC10.05□□□□□ -0.85e-7■■■■□ 25.7
UPF1Q92900 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.453e-8■■■■□ 25.7
UPF1Q92900 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.025e-7■■■■□ 25.7
UPF1Q92900 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.116e-11■■■■□ 25.7
UPF1Q92900 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.026e-11■■■■□ 25.7
UPF1Q92900 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC20.81■□□□□ 0.926e-11■■■■□ 25.7
UPF1Q92900 MRFAP1-204ENST00000512914 1982 nt17.02■□□□□ 0.316e-11■■■■□ 25.7
UPF1Q92900 SHMT2-217ENST00000555116 1885 ntTSL 219.39■□□□□ 0.74e-7■■■■□ 25.7
UPF1Q92900 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC19.31■□□□□ 0.684e-7■■■■□ 25.7
UPF1Q92900 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.62■□□□□ 0.574e-7■■■■□ 25.7
UPF1Q92900 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC17.82■□□□□ 0.444e-7■■■■□ 25.7
UPF1Q92900 SHMT2-231ENST00000557433 1904 ntTSL 1 (best)16.24■□□□□ 0.194e-7■■■■□ 25.7
UPF1Q92900 SHMT2-233ENST00000557529 1369 ntTSL 214.62□□□□□ -0.074e-7■■■■□ 25.7
UPF1Q92900 SHMT2-226ENST00000556825 2215 ntTSL 1 (best)13.6□□□□□ -0.234e-7■■■■□ 25.7
UPF1Q92900 SHMT2-222ENST00000555774 2311 ntTSL 1 (best)13.41□□□□□ -0.264e-7■■■■□ 25.7
UPF1Q92900 SHMT2-207ENST00000553837 2152 ntTSL 513.32□□□□□ -0.284e-7■■■■□ 25.7
UPF1Q92900 SHMT2-201ENST00000328923 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.314e-7■■■■□ 25.7
UPF1Q92900 SHMT2-212ENST00000554467 3416 ntTSL 212.94□□□□□ -0.344e-7■■■■□ 25.7
UPF1Q92900 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.51e-6■■■■□ 25.7
UPF1Q92900 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC23.34■■□□□ 1.331e-6■■■■□ 25.7
UPF1Q92900 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC22.71■■□□□ 1.231e-6■■■■□ 25.7
UPF1Q92900 AP5S1-205ENST00000615891 5362 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.391e-6■■■■□ 25.7
UPF1Q92900 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.912e-8■■■■□ 25.7
UPF1Q92900 RNF40-203ENST00000493683 5371 ntTSL 219.82■□□□□ 0.762e-8■■■■□ 25.7
UPF1Q92900 RNF40-212ENST00000602784 991 ntTSL 318.58■□□□□ 0.562e-8■■■■□ 25.7
UPF1Q92900 RNF40-202ENST00000357890 3917 ntTSL 2 BASIC10.35□□□□□ -0.752e-8■■■■□ 25.7
UPF1Q92900 RNF40-204ENST00000563683 4063 ntTSL 5 BASIC10.34□□□□□ -0.752e-8■■■■□ 25.7
UPF1Q92900 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.765e-7■■■■□ 25.7
UPF1Q92900 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.522e-8■■■■□ 25.7
UPF1Q92900 NUDCD3-209ENST00000487118 314 ntTSL 311.97□□□□□ -0.498e-8■■■■□ 25.7
UPF1Q92900 NUDCD3-202ENST00000355451 8256 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.578e-8■■■■□ 25.7
UPF1Q92900 NUDCD3-203ENST00000460110 3641 ntTSL 1 (best)10.4□□□□□ -0.748e-8■■■■□ 25.7
UPF1Q92900 POLR2D-204ENST00000487079 1037 ntTSL 236.1■■■■□ 3.371e-13■■■■□ 25.7
UPF1Q92900 CDCA5-208ENST00000529290 789 ntTSL 524.07■■□□□ 1.442e-12■■■■□ 25.7
UPF1Q92900 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.552e-12■■■■□ 25.7
UPF1Q92900 CDCA5-210ENST00000533015 563 ntTSL 216.71■□□□□ 0.272e-12■■■■□ 25.7
UPF1Q92900 CDCA5-206ENST00000525464 672 ntTSL 514.68□□□□□ -0.062e-12■■■■□ 25.7
UPF1Q92900 YIPF5-202ENST00000448443 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.182e-6■■■■□ 25.6
UPF1Q92900 YIPF5-204ENST00000513112 2135 ntTSL 1 (best) BASIC13.22□□□□□ -0.292e-6■■■■□ 25.6
UPF1Q92900 YIPF5-201ENST00000274496 3147 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.842e-6■■■■□ 25.6
UPF1Q92900 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.465e-7■■■■□ 25.6
UPF1Q92900 C20orf27-203ENST00000399672 1734 ntAPPRIS P1 TSL 229.48■■■□□ 2.315e-7■■■■□ 25.6
UPF1Q92900 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC27.98■■■□□ 2.075e-7■■■■□ 25.6
UPF1Q92900 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.58■■□□□ 1.217e-7■■■■□ 25.6
UPF1Q92900 HAUS2-209ENST00000570178 861 ntTSL 312.48□□□□□ -0.412e-6■■■■□ 25.6
UPF1Q92900 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.767e-7■■■■□ 25.6
UPF1Q92900 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.672e-6■■■■□ 25.6
UPF1Q92900 PQLC1-207ENST00000478144 409 ntTSL 318.45■□□□□ 0.542e-6■■■■□ 25.6
UPF1Q92900 GOLGA3-201ENST00000204726 9252 ntAPPRIS P3 TSL 5 BASIC12.04□□□□□ -0.481e-7■■■■□ 25.6
Retrieved 100 of 15,879 protein–RNA pairs in 127.1 ms