RNA–Protein interactions for RNA: ENST00000460110.5

NUDCD3-203, Transcript of NudC domain containing 3, humanhuman

TSL 1 (best)

Gene NUDCD3, Length 3,641 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3-203ENST00000460110 NISCHQ9Y2I1 1504 aa19.61■□□□□ 0.73
NUDCD3-203ENST00000460110 DCAF8L2P0C7V8 631 aa17.44■□□□□ 0.38
NUDCD3-203ENST00000460110 SHROOM4Q9ULL8 1493 aa17.13■□□□□ 0.33
NUDCD3-203ENST00000460110 SUPT5HO00267 1087 aaKnown RBP16.71■□□□□ 0.27
NUDCD3-203ENST00000460110 CCDC180Q9P1Z9 1646 aa16.54■□□□□ 0.24
NUDCD3-203ENST00000460110 ABCC9O60706 1549 aa16.41■□□□□ 0.22
NUDCD3-203ENST00000460110 ZCCHC6Q5VYS8 1495 aaKnown RBP16.41■□□□□ 0.22
NUDCD3-203ENST00000460110 SCRIBQ14160 1630 aa15.91■□□□□ 0.14
NUDCD3-203ENST00000460110 PABPN1Q86U42 306 aaKnown RBP eCLIP15.85■□□□□ 0.13
NUDCD3-203ENST00000460110 DCAF1Q9Y4B6 1507 aa15.8■□□□□ 0.12
NUDCD3-203ENST00000460110 EHMT2Q96KQ7 1210 aa15.67■□□□□ 0.1
NUDCD3-203ENST00000460110 CHIC1Q5VXU3 224 aa15.66■□□□□ 0.1
NUDCD3-203ENST00000460110 NACADO15069 1562 aa15.62■□□□□ 0.09
NUDCD3-203ENST00000460110 FAM9AQ8IZU1 332 aaPredicted RBP15.57■□□□□ 0.08
NUDCD3-203ENST00000460110 RB1CC1Q8TDY2 1594 aa15.55■□□□□ 0.08
NUDCD3-203ENST00000460110 CECR2Q9BXF3 1484 aa15.51■□□□□ 0.07
NUDCD3-203ENST00000460110 RSF1Q96T23 1441 aaPredicted RBP15.49■□□□□ 0.07
NUDCD3-203ENST00000460110 MYO15BQ96JP2 1530 aa15.46■□□□□ 0.07
NUDCD3-203ENST00000460110 TRIM41Q8WV44 630 aa15.46■□□□□ 0.07
NUDCD3-203ENST00000460110 LOC105371045A0A1W2PR82 267 aa15.41■□□□□ 0.06
NUDCD3-203ENST00000460110 MROH2BQ7Z745 1585 aa15.31■□□□□ 0.04
NUDCD3-203ENST00000460110 WIZO95785 1651 aa15.15■□□□□ 0.02
NUDCD3-203ENST00000460110 BAZ1AQ9NRL2 1556 aaPredicted RBP15.1■□□□□ 0.01
NUDCD3-203ENST00000460110 PCGF6Q9BYE7 350 aa15.05■□□□□ 0
NUDCD3-203ENST00000460110 RANGAP1P46060 587 aaPredicted RBP15.02□□□□□ -0.01
NUDCD3-203ENST00000460110 PPARGC1BQ86YN6 1023 aaKnown RBP15□□□□□ -0.01
NUDCD3-203ENST00000460110 TTBK1Q5TCY1 1321 aaPredicted RBP15□□□□□ -0.01
NUDCD3-203ENST00000460110 UNC13AQ9UPW8 1703 aa14.98□□□□□ -0.01
NUDCD3-203ENST00000460110 BICRAQ9NZM4 1560 aa14.98□□□□□ -0.01
NUDCD3-203ENST00000460110 SMARCA4P51532 1647 aa14.96□□□□□ -0.01
NUDCD3-203ENST00000460110 CCDC88BA6NC98 1476 aa14.94□□□□□ -0.02
NUDCD3-203ENST00000460110 UBTFP17480 764 aaKnown RBP14.92□□□□□ -0.02
NUDCD3-203ENST00000460110 BAZ1BQ9UIG0 1483 aaKnown RBP14.88□□□□□ -0.03
NUDCD3-203ENST00000460110 ATAD2BQ9ULI0 1458 aa14.83□□□□□ -0.04
NUDCD3-203ENST00000460110 TOP2AP11388 1531 aaKnown RBP14.83□□□□□ -0.04
NUDCD3-203ENST00000460110 ABCC8Q09428 1581 aa14.82□□□□□ -0.04
NUDCD3-203ENST00000460110 SMARCA2P51531 1590 aa14.73□□□□□ -0.05
NUDCD3-203ENST00000460110 CSRNP3Q8WYN3 585 aa14.72□□□□□ -0.05
NUDCD3-203ENST00000460110 SOGA1O94964 1423 aa14.69□□□□□ -0.06
NUDCD3-203ENST00000460110 WRNQ14191 1432 aaPredicted RBP eCLIP14.67□□□□□ -0.06
NUDCD3-203ENST00000460110 EIF4G1Q04637 1599 aaKnown RBP14.67□□□□□ -0.06
NUDCD3-203ENST00000460110 TRIM26Q12899 539 aaPredicted RBP14.62□□□□□ -0.07
NUDCD3-203ENST00000460110 DNAJC5BQ9UF47 199 aa14.61□□□□□ -0.07
NUDCD3-203ENST00000460110 RUSC2Q8N2Y8 1516 aa14.59□□□□□ -0.07
NUDCD3-203ENST00000460110 APLP2Q06481 763 aa14.55□□□□□ -0.08
NUDCD3-203ENST00000460110 NCAPD3P42695 1498 aa14.54□□□□□ -0.08
NUDCD3-203ENST00000460110 ATP1B4Q9UN42 357 aaPredicted RBP14.51□□□□□ -0.09
NUDCD3-203ENST00000460110 PEG3Q9GZU2 1588 aa14.46□□□□□ -0.09
NUDCD3-203ENST00000460110 CC2D2AQ9P2K1 1620 aa14.44□□□□□ -0.1
NUDCD3-203ENST00000460110 HRCP23327 699 aa14.44□□□□□ -0.1
NUDCD3-203ENST00000460110 CADPSQ9ULU8 1353 aa14.43□□□□□ -0.1
NUDCD3-203ENST00000460110 P3H3Q8IVL6 736 aa14.41□□□□□ -0.1
NUDCD3-203ENST00000460110 CEP162Q5TB80 1403 aa14.4□□□□□ -0.1
NUDCD3-203ENST00000460110 SYNJ1O43426 1573 aa14.39□□□□□ -0.11
NUDCD3-203ENST00000460110 NESP48681 1621 aa14.36□□□□□ -0.11
NUDCD3-203ENST00000460110 HNRNPUL2Q1KMD3 747 aaKnown RBP14.36□□□□□ -0.11
NUDCD3-203ENST00000460110 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.35□□□□□ -0.11
NUDCD3-203ENST00000460110 HMGXB3Q12766 1538 aa14.35□□□□□ -0.11
NUDCD3-203ENST00000460110 EEA1Q15075 1411 aa14.34□□□□□ -0.11
NUDCD3-203ENST00000460110 CCER1Q8TC90 406 aaPredicted RBP14.34□□□□□ -0.11
NUDCD3-203ENST00000460110 GOLGA3Q08378 1498 aa14.33□□□□□ -0.12
NUDCD3-203ENST00000460110 TNIKQ9UKE5 1360 aa14.33□□□□□ -0.12
NUDCD3-203ENST00000460110 CFTRP13569 1480 aa14.32□□□□□ -0.12
NUDCD3-203ENST00000460110 CLIP1P30622 1438 aa14.29□□□□□ -0.12
NUDCD3-203ENST00000460110 CUX2O14529 1486 aa14.29□□□□□ -0.12
NUDCD3-203ENST00000460110 KIF27Q86VH2 1401 aa14.29□□□□□ -0.12
NUDCD3-203ENST00000460110 ITGAEP38570 1179 aa14.29□□□□□ -0.12
NUDCD3-203ENST00000460110 RAPGEF2Q9Y4G8 1499 aa14.29□□□□□ -0.12
NUDCD3-203ENST00000460110 CEP164Q9UPV0 1460 aa14.28□□□□□ -0.12
NUDCD3-203ENST00000460110 FANCD2Q9BXW9 1451 aa14.27□□□□□ -0.13
NUDCD3-203ENST00000460110 CUX1P39880 1505 aa14.24□□□□□ -0.13
NUDCD3-203ENST00000460110 FBLN2P98095 1184 aa14.23□□□□□ -0.13
NUDCD3-203ENST00000460110 TDRD9Q8NDG6 1382 aaKnown RBP14.23□□□□□ -0.13
NUDCD3-203ENST00000460110 ARID3CA6NKF2 412 aa14.2□□□□□ -0.14
NUDCD3-203ENST00000460110 RAD54L2Q9Y4B4 1467 aa14.2□□□□□ -0.14
NUDCD3-203ENST00000460110 FGD5Q6ZNL6 1462 aa14.18□□□□□ -0.14
NUDCD3-203ENST00000460110 CARMIL1Q5VZK9 1371 aa14.17□□□□□ -0.14
NUDCD3-203ENST00000460110 TOP2BQ02880 1626 aa14.16□□□□□ -0.14
NUDCD3-203ENST00000460110 PDS5BQ9NTI5 1447 aa14.14□□□□□ -0.15
NUDCD3-203ENST00000460110 IGF1RP08069 1367 aa14.13□□□□□ -0.15
NUDCD3-203ENST00000460110 KANK4Q5T7N3 995 aaPredicted RBP14.08□□□□□ -0.15
NUDCD3-203ENST00000460110 ZEB1P37275 1124 aaPredicted RBP14.08□□□□□ -0.16
NUDCD3-203ENST00000460110 ERCC6Q03468 1493 aa14.07□□□□□ -0.16
NUDCD3-203ENST00000460110 FAM50AQ14320 339 aaKnown RBP14.05□□□□□ -0.16
NUDCD3-203ENST00000460110 TOPBP1Q92547 1522 aa14.04□□□□□ -0.16
NUDCD3-203ENST00000460110 VPS8Q8N3P4 1428 aa14.03□□□□□ -0.16
NUDCD3-203ENST00000460110 POLA1P09884 1462 aaPredicted RBP14.03□□□□□ -0.16
NUDCD3-203ENST00000460110 PRXQ9BXM0 1461 aa14.02□□□□□ -0.17
NUDCD3-203ENST00000460110 BIVM-ERCC5R4GMW8 1640 aa13.98□□□□□ -0.17
NUDCD3-203ENST00000460110 AQRO60306 1485 aaKnown RBP eCLIP13.98□□□□□ -0.17
NUDCD3-203ENST00000460110 KIF21BO75037 1637 aa13.98□□□□□ -0.17
NUDCD3-203ENST00000460110 CHMP7Q8WUX9 453 aaPredicted RBP13.97□□□□□ -0.17
NUDCD3-203ENST00000460110 URB2Q14146 1524 aaKnown RBP13.97□□□□□ -0.17
NUDCD3-203ENST00000460110 ARAP1Q96P48 1450 aa13.93□□□□□ -0.18
NUDCD3-203ENST00000460110 FHOD3Q2V2M9 1422 aa13.93□□□□□ -0.18
NUDCD3-203ENST00000460110 DNMBPQ6XZF7 1577 aa13.92□□□□□ -0.18
NUDCD3-203ENST00000460110 GAPVD1Q14C86 1478 aa13.92□□□□□ -0.18
NUDCD3-203ENST00000460110 LAMC3Q9Y6N6 1575 aa13.92□□□□□ -0.18
NUDCD3-203ENST00000460110 ARHGAP35Q9NRY4 1499 aa13.87□□□□□ -0.19
NUDCD3-203ENST00000460110 ERICH3Q5RHP9 1530 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 571 ms